Wall clock time and date at job start Wed Apr 1 2020 04:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47312 * 2 1 4 4 H 1.09001 * 110.36463 * 51.87243 * 3 2 1 5 5 C 1.54374 * 110.51708 * 289.45267 * 3 2 1 6 6 H 1.09001 * 110.32022 * 336.21465 * 5 3 2 7 7 N 1.46501 * 110.32493 * 98.31643 * 5 3 2 8 8 C 1.34774 * 119.99880 * 205.00369 * 7 5 3 9 9 O 1.21474 * 120.00369 * 0.02562 * 8 7 5 10 10 C 1.48462 * 119.99882 * 180.02562 * 8 7 5 11 11 C 1.39527 * 120.55118 * 179.97438 * 10 8 7 12 12 C 1.38760 * 118.26514 * 179.97438 * 11 10 8 13 13 N 1.32210 * 119.14804 * 359.97438 * 12 11 10 14 14 C 1.31886 * 121.03457 * 0.02562 * 13 12 11 15 15 N 1.31588 * 121.91400 * 359.71264 * 14 13 12 16 16 C 1.54251 * 105.06279 * 217.31939 * 5 3 2 17 17 C 1.54383 * 105.06135 * 359.97438 * 16 5 3 18 18 N 1.48552 * 104.59123 * 23.85445 * 17 16 5 19 19 C 1.46906 * 110.99611 * 200.95942 * 18 17 16 20 20 C 1.50695 * 109.47226 * 279.60358 * 19 18 17 21 21 O 1.21291 * 120.00059 * 0.02562 * 20 19 18 22 22 N 1.34773 * 120.00104 * 179.97438 * 20 19 18 23 23 C 1.37102 * 120.00595 * 179.72677 * 22 20 19 24 24 H 1.08002 * 119.99370 * 0.27545 * 23 22 20 25 25 C 1.38939 * 120.00637 * 180.27849 * 23 22 20 26 26 N 1.31418 * 120.00141 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00113 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47202 * 89.99923 * 27 25 23 29 29 H 1.48507 * 109.46849 * 209.99724 * 27 25 23 30 30 H 1.48493 * 109.47171 * 329.99402 * 27 25 23 31 31 H 1.08997 * 109.47092 * 185.22993 * 1 2 3 32 32 H 1.09001 * 109.46890 * 305.23096 * 1 2 3 33 33 H 1.09000 * 109.46993 * 65.22457 * 1 2 3 34 34 H 1.09005 * 109.46912 * 240.00078 * 2 1 3 35 35 H 1.08997 * 109.47285 * 120.00586 * 2 1 3 36 36 H 0.96994 * 119.99766 * 25.00489 * 7 5 3 37 37 H 1.08000 * 120.87039 * 0.02562 * 11 10 8 38 38 H 1.08000 * 120.43234 * 180.02562 * 12 11 10 39 39 H 1.07998 * 119.03871 * 179.97438 * 14 13 12 40 40 H 1.09000 * 110.32751 * 118.89287 * 16 5 3 41 41 H 1.09000 * 110.32331 * 240.99938 * 16 5 3 42 42 H 1.08996 * 110.40968 * 265.07302 * 17 16 5 43 43 H 1.09003 * 110.41220 * 142.63685 * 17 16 5 44 44 H 1.09003 * 109.47030 * 159.60060 * 19 18 17 45 45 H 1.09004 * 109.47127 * 39.61004 * 19 18 17 46 46 H 0.97001 * 119.99908 * 0.02562 * 22 20 19 47 47 H 0.96996 * 119.99816 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5717 2.0104 0.8038 5 6 1.7664 2.1131 -1.3633 6 1 1.6709 1.3584 -2.1440 7 7 0.5517 2.9292 -1.2943 8 6 -0.1516 3.1867 -2.4147 9 8 0.2214 2.7418 -3.4818 10 6 -1.3822 4.0142 -2.3449 11 6 -2.1189 4.2884 -3.4977 12 6 -3.2616 5.0663 -3.3778 13 7 -3.6114 5.5172 -2.1852 14 6 -2.8921 5.2392 -1.1153 15 7 -1.8044 4.5015 -1.1808 16 6 2.9984 3.0032 -1.6265 17 6 3.9125 2.7961 -0.3998 18 7 3.5185 1.4698 0.1408 19 6 3.9160 1.3360 1.5488 20 6 5.3781 0.9795 1.6262 21 8 6.0255 0.8500 0.6087 22 7 5.9667 0.8055 2.8261 23 6 7.2956 0.4756 2.8965 24 1 7.8718 0.3595 1.9905 25 6 7.9009 0.2905 4.1333 26 7 7.1999 0.4322 5.2358 27 14 9.7117 -0.1582 4.2291 28 1 10.5262 1.0817 4.2940 29 1 9.9555 -0.9749 5.4453 30 1 10.0927 -0.9384 3.0245 31 1 -0.3633 -1.0234 0.0937 32 1 -0.3633 0.5928 0.8394 33 1 -0.3633 0.4307 -0.9331 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.2537 3.2841 -0.4422 37 1 -1.8082 3.9045 -4.4582 38 1 -3.8582 5.2997 -4.2473 39 1 -3.2073 5.6247 -0.1570 40 1 3.5076 2.6856 -2.5364 41 1 2.7001 4.0486 -1.7057 42 1 3.7370 3.5761 0.3410 43 1 4.9595 2.7874 -0.7030 44 1 3.3250 0.5507 2.0201 45 1 3.7442 2.2800 2.0661 46 1 5.4490 0.9094 3.6398 47 1 7.6226 0.3034 6.0993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692212408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:40 Heat of formation + Delta-G solvation = -11.054594 kcal Electronic energy + Delta-G solvation = -30098.143487 eV Core-core repulsion = 25895.277000 eV Total energy + Delta-G solvation = -4202.866487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68900 -40.28237 -38.94480 -37.67738 -34.85338 -34.25470 -33.79053 -33.36766 -32.61574 -31.36156 -30.85710 -27.75874 -26.86344 -25.68525 -24.87779 -24.16869 -23.00852 -21.81060 -20.69635 -20.47976 -19.15582 -18.64534 -18.13266 -17.84358 -16.63971 -16.08391 -16.03736 -15.96266 -15.79624 -15.20154 -14.95271 -14.63901 -14.53117 -14.38696 -14.28908 -14.22097 -13.85650 -13.46984 -13.36291 -13.09058 -12.55779 -12.17971 -12.06914 -11.70931 -11.52429 -11.50832 -11.41535 -11.33752 -11.32941 -11.09104 -11.03399 -10.78750 -10.62949 -10.57367 -10.37965 -10.30277 -10.19872 -9.84821 -9.47593 -9.30230 -8.55403 -8.03201 -7.93162 -6.39672 -3.80258 -0.01848 0.37142 2.34650 2.54895 3.19024 3.27482 3.32856 3.33536 3.39686 3.58874 3.89754 3.94729 4.11489 4.25485 4.33260 4.38902 4.49154 4.63065 4.93614 4.98278 5.07565 5.08500 5.16094 5.20983 5.26229 5.28854 5.39792 5.43562 5.57805 5.70128 5.74600 5.75704 5.83739 5.87972 5.97900 6.03311 6.11101 6.20628 6.23086 6.28771 6.33028 6.36312 7.04185 7.08662 7.17725 7.41501 7.57206 7.75419 8.08584 8.64586 9.20854 9.57181 10.09590 10.78234 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.001945 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.787366 B =14389.579739 C =14510.742086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.057 3.943 4 H 0.056 0.944 5 C 0.145 3.855 6 H 0.106 0.894 7 N -0.695 5.695 8 C 0.569 3.431 9 O -0.521 6.521 10 C 0.133 3.867 11 C -0.170 4.170 12 C 0.150 3.850 13 N -0.508 5.508 14 C 0.295 3.705 15 N -0.496 5.496 16 C -0.133 4.133 17 C 0.038 3.962 18 N -0.475 5.475 19 C 0.035 3.965 20 C 0.447 3.553 21 O -0.574 6.574 22 N -0.567 5.567 23 C -0.296 4.296 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.929 3.071 28 H -0.279 1.279 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.410 0.590 37 H 0.162 0.838 38 H 0.178 0.822 39 H 0.204 0.796 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.925 8.648 -11.498 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.053 4.053 4 H 0.074 0.926 5 C 0.040 3.960 6 H 0.124 0.876 7 N -0.346 5.346 8 C 0.352 3.648 9 O -0.395 6.395 10 C -0.015 4.015 11 C -0.193 4.193 12 C -0.017 4.017 13 N -0.222 5.222 14 C 0.007 3.993 15 N -0.213 5.213 16 C -0.172 4.172 17 C -0.089 4.089 18 N -0.199 5.199 19 C -0.097 4.097 20 C 0.232 3.768 21 O -0.457 6.457 22 N -0.205 5.205 23 C -0.426 4.426 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.757 3.243 28 H -0.205 1.205 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.179 0.821 38 H 0.195 0.805 39 H 0.220 0.780 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.105 8.074 -12.139 26.480 hybrid contribution 0.270 0.466 0.938 1.082 sum -21.835 8.540 -11.201 25.984 Atomic orbital electron populations 1.21762 0.95797 1.01647 1.01477 1.21457 0.94809 0.94890 1.03594 1.22927 0.90223 0.96924 0.95196 0.92628 1.21880 0.82793 0.92789 0.98522 0.87636 1.45994 1.26151 1.52022 1.10439 1.17776 0.82187 0.80206 0.84626 1.90825 1.68839 1.51232 1.28606 1.21706 0.95158 0.94786 0.89818 1.23028 0.96134 0.98838 1.01260 1.23403 0.92705 0.89759 0.95808 1.68392 1.32292 1.21563 0.99926 1.25041 0.86152 0.90244 0.97873 1.68364 1.15646 1.09882 1.27404 1.22749 0.95342 0.99445 0.99627 1.23157 1.01399 0.89201 0.95185 1.65024 1.07362 1.30418 1.17084 1.22082 0.97337 1.01207 0.89081 1.19674 0.88001 0.84615 0.84526 1.90522 1.64969 1.55677 1.34531 1.41860 1.10694 1.61611 1.06301 1.19686 0.85298 1.43530 0.94094 0.87956 1.25246 1.00334 0.97670 0.94790 1.69613 1.36972 1.50117 0.97800 0.85866 0.82163 0.78512 0.77806 1.20484 1.20966 1.19426 0.92528 0.92925 0.93038 0.90760 0.91148 0.75333 0.82051 0.80538 0.78000 0.89955 0.91118 0.94154 0.88562 0.89340 0.92964 0.77588 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.72 37.16 0.36 -1.07 16 2 C -0.11 -1.28 5.59 -26.73 -0.15 -1.43 16 3 C 0.06 0.69 1.95 -66.09 -0.13 0.56 16 4 H 0.06 0.62 7.61 -51.93 -0.39 0.22 16 5 C 0.14 1.68 2.40 -66.56 -0.16 1.52 16 6 H 0.11 1.37 7.15 -51.93 -0.37 1.00 16 7 N -0.69 -6.87 4.76 -53.22 -0.25 -7.12 16 8 C 0.57 6.15 7.83 -12.05 -0.09 6.06 16 9 O -0.52 -7.02 16.08 5.39 0.09 -6.94 16 10 C 0.13 1.21 6.79 -82.63 -0.56 0.65 16 11 C -0.17 -1.21 9.72 -38.91 -0.38 -1.59 16 12 C 0.15 0.88 11.31 -17.20 -0.19 0.68 16 13 N -0.51 -3.71 10.42 -14.59 -0.15 -3.86 16 14 C 0.30 2.03 12.28 -92.25 -1.13 0.90 16 15 N -0.50 -4.12 9.70 -11.14 -0.11 -4.23 16 16 C -0.13 -1.66 6.79 -25.35 -0.17 -1.83 16 17 C 0.04 0.58 6.08 -2.18 -0.01 0.56 16 18 N -0.48 -7.59 4.56 -223.59 -1.02 -8.61 16 19 C 0.03 0.60 5.31 -4.98 -0.03 0.58 16 20 C 0.45 10.46 7.69 -10.99 -0.08 10.38 16 21 O -0.57 -15.51 15.29 5.55 0.08 -15.42 16 22 N -0.57 -14.30 5.29 -10.97 -0.06 -14.35 16 23 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 24 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 25 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 26 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 27 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.51 7.54 -51.93 -0.39 0.12 16 34 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 35 H 0.07 0.87 7.17 -51.93 -0.37 0.50 16 36 H 0.41 3.56 7.76 -40.82 -0.32 3.24 16 37 H 0.16 0.99 7.74 -52.49 -0.41 0.58 16 38 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 39 H 0.20 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 42 H 0.04 0.56 7.67 -51.93 -0.40 0.17 16 43 H 0.10 1.70 7.66 -51.93 -0.40 1.30 16 44 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 45 H 0.05 0.82 7.64 -51.93 -0.40 0.42 16 46 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -33.54 393.41 -9.35 -42.89 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.58 Total: 11.42 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.97 Total: 8.03 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.87 Total: -62.00 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.17 Total: -22.36 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.54 -9.35 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692212408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.832 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds