Wall clock time and date at job start Wed Apr 1 2020 04:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47312 * 2 1 4 4 H 1.09001 * 110.36463 * 51.87243 * 3 2 1 5 5 C 1.54374 * 110.51708 * 289.45267 * 3 2 1 6 6 H 1.09001 * 110.32022 * 336.21465 * 5 3 2 7 7 N 1.46501 * 110.32493 * 98.31643 * 5 3 2 8 8 C 1.34774 * 119.99880 * 205.00369 * 7 5 3 9 9 O 1.21474 * 120.00369 * 0.02562 * 8 7 5 10 10 C 1.48462 * 119.99882 * 180.02562 * 8 7 5 11 11 C 1.39527 * 120.55118 * 179.97438 * 10 8 7 12 12 C 1.38760 * 118.26514 * 179.97438 * 11 10 8 13 13 N 1.32210 * 119.14804 * 359.97438 * 12 11 10 14 14 C 1.31886 * 121.03457 * 0.02562 * 13 12 11 15 15 N 1.31588 * 121.91400 * 359.71264 * 14 13 12 16 16 C 1.54251 * 105.06279 * 217.31939 * 5 3 2 17 17 C 1.54383 * 105.06135 * 359.97438 * 16 5 3 18 18 N 1.48552 * 104.59123 * 23.85445 * 17 16 5 19 19 C 1.46906 * 110.99611 * 200.95942 * 18 17 16 20 20 C 1.50695 * 109.47226 * 279.60358 * 19 18 17 21 21 O 1.21291 * 120.00059 * 0.02562 * 20 19 18 22 22 N 1.34773 * 120.00104 * 179.97438 * 20 19 18 23 23 C 1.37102 * 120.00595 * 179.72677 * 22 20 19 24 24 H 1.08002 * 119.99370 * 0.27545 * 23 22 20 25 25 C 1.38939 * 120.00637 * 180.27849 * 23 22 20 26 26 N 1.31418 * 120.00141 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00113 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47202 * 89.99923 * 27 25 23 29 29 H 1.48507 * 109.46849 * 209.99724 * 27 25 23 30 30 H 1.48493 * 109.47171 * 329.99402 * 27 25 23 31 31 H 1.08997 * 109.47092 * 185.22993 * 1 2 3 32 32 H 1.09001 * 109.46890 * 305.23096 * 1 2 3 33 33 H 1.09000 * 109.46993 * 65.22457 * 1 2 3 34 34 H 1.09005 * 109.46912 * 240.00078 * 2 1 3 35 35 H 1.08997 * 109.47285 * 120.00586 * 2 1 3 36 36 H 0.96994 * 119.99766 * 25.00489 * 7 5 3 37 37 H 1.08000 * 120.87039 * 0.02562 * 11 10 8 38 38 H 1.08000 * 120.43234 * 180.02562 * 12 11 10 39 39 H 1.07998 * 119.03871 * 179.97438 * 14 13 12 40 40 H 1.09000 * 110.32751 * 118.89287 * 16 5 3 41 41 H 1.09000 * 110.32331 * 240.99938 * 16 5 3 42 42 H 1.08996 * 110.40968 * 265.07302 * 17 16 5 43 43 H 1.09003 * 110.41220 * 142.63685 * 17 16 5 44 44 H 1.09003 * 109.47030 * 159.60060 * 19 18 17 45 45 H 1.09004 * 109.47127 * 39.61004 * 19 18 17 46 46 H 0.97001 * 119.99908 * 0.02562 * 22 20 19 47 47 H 0.96996 * 119.99816 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5717 2.0104 0.8038 5 6 1.7664 2.1131 -1.3633 6 1 1.6709 1.3584 -2.1440 7 7 0.5517 2.9292 -1.2943 8 6 -0.1516 3.1867 -2.4147 9 8 0.2214 2.7418 -3.4818 10 6 -1.3822 4.0142 -2.3449 11 6 -2.1189 4.2884 -3.4977 12 6 -3.2616 5.0663 -3.3778 13 7 -3.6114 5.5172 -2.1852 14 6 -2.8921 5.2392 -1.1153 15 7 -1.8044 4.5015 -1.1808 16 6 2.9984 3.0032 -1.6265 17 6 3.9125 2.7961 -0.3998 18 7 3.5185 1.4698 0.1408 19 6 3.9160 1.3360 1.5488 20 6 5.3781 0.9795 1.6262 21 8 6.0255 0.8500 0.6087 22 7 5.9667 0.8055 2.8261 23 6 7.2956 0.4756 2.8965 24 1 7.8718 0.3595 1.9905 25 6 7.9009 0.2905 4.1333 26 7 7.1999 0.4322 5.2358 27 14 9.7117 -0.1582 4.2291 28 1 10.5262 1.0817 4.2940 29 1 9.9555 -0.9749 5.4453 30 1 10.0927 -0.9384 3.0245 31 1 -0.3633 -1.0234 0.0937 32 1 -0.3633 0.5928 0.8394 33 1 -0.3633 0.4307 -0.9331 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.2537 3.2841 -0.4422 37 1 -1.8082 3.9045 -4.4582 38 1 -3.8582 5.2997 -4.2473 39 1 -3.2073 5.6247 -0.1570 40 1 3.5076 2.6856 -2.5364 41 1 2.7001 4.0486 -1.7057 42 1 3.7370 3.5761 0.3410 43 1 4.9595 2.7874 -0.7030 44 1 3.3250 0.5507 2.0201 45 1 3.7442 2.2800 2.0661 46 1 5.4490 0.9094 3.6398 47 1 7.6226 0.3034 6.0993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692212408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:39 Heat of formation + Delta-G solvation = -35.855332 kcal Electronic energy + Delta-G solvation = -30099.218928 eV Core-core repulsion = 25895.277000 eV Total energy + Delta-G solvation = -4203.941927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28273 -41.25741 -40.21012 -39.25016 -36.05732 -35.61685 -34.85194 -34.32882 -33.27808 -33.14930 -32.14935 -28.74158 -28.28187 -26.63628 -25.84211 -25.35731 -23.91471 -22.81681 -21.75880 -21.44208 -20.87893 -19.86374 -19.41492 -18.70009 -17.80084 -17.49246 -16.88445 -16.62731 -16.48542 -16.46893 -16.22577 -16.18089 -15.77945 -15.44643 -15.35989 -15.19728 -14.88030 -14.67582 -14.52267 -14.17255 -13.92867 -13.66306 -13.41089 -13.05384 -12.96460 -12.77435 -12.49013 -12.41097 -12.37922 -12.11896 -12.04349 -12.00243 -11.93000 -11.89733 -11.58505 -11.55194 -11.46538 -10.83676 -10.42782 -10.34022 -10.20418 -9.98464 -9.40133 -8.44972 -5.93133 -0.62670 -0.10063 1.38185 1.41710 1.54260 1.59779 1.73766 2.08706 2.29359 2.69419 2.76601 2.88977 3.18703 3.21476 3.31473 3.38442 3.52759 3.72048 3.76422 3.97525 4.03459 4.06871 4.18171 4.25331 4.32198 4.36526 4.48856 4.52968 4.53918 4.56697 4.61308 4.65299 4.84438 4.92645 4.97878 5.06504 5.16373 5.20908 5.24731 5.30894 5.38877 5.42788 5.70694 5.82658 5.92851 6.08526 6.31243 6.63336 6.86776 6.97591 7.15643 7.59526 8.16248 8.72454 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.001945 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.787366 B =14389.579739 C =14510.742086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.064 3.936 4 H 0.079 0.921 5 C 0.155 3.845 6 H 0.092 0.908 7 N -0.684 5.684 8 C 0.570 3.430 9 O -0.553 6.553 10 C 0.115 3.885 11 C -0.171 4.171 12 C 0.159 3.841 13 N -0.520 5.520 14 C 0.291 3.709 15 N -0.506 5.506 16 C -0.124 4.124 17 C 0.040 3.960 18 N -0.501 5.501 19 C 0.049 3.951 20 C 0.444 3.556 21 O -0.616 6.616 22 N -0.576 5.576 23 C -0.330 4.330 24 H 0.077 0.923 25 C -0.014 4.014 26 N -0.920 5.920 27 Si 0.991 3.009 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.275 1.275 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.419 0.581 37 H 0.168 0.832 38 H 0.212 0.788 39 H 0.230 0.770 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.076 0.924 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.113 9.597 -10.858 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.044 4.044 4 H 0.096 0.904 5 C 0.050 3.950 6 H 0.110 0.890 7 N -0.335 5.335 8 C 0.355 3.645 9 O -0.430 6.430 10 C -0.033 4.033 11 C -0.194 4.194 12 C -0.008 4.008 13 N -0.234 5.234 14 C 0.003 3.997 15 N -0.222 5.222 16 C -0.163 4.163 17 C -0.088 4.088 18 N -0.226 5.226 19 C -0.083 4.083 20 C 0.231 3.769 21 O -0.501 6.501 22 N -0.214 5.214 23 C -0.460 4.460 24 H 0.095 0.905 25 C -0.213 4.213 26 N -0.562 5.562 27 Si 0.815 3.185 28 H -0.197 1.197 29 H -0.195 1.195 30 H -0.200 1.200 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.257 0.743 37 H 0.186 0.814 38 H 0.229 0.771 39 H 0.246 0.754 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.094 0.906 46 H 0.230 0.770 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.328 9.038 -11.462 28.371 hybrid contribution 0.886 0.199 0.679 1.134 sum -23.442 9.237 -10.783 27.407 Atomic orbital electron populations 1.21678 0.93853 1.02390 1.01816 1.21452 0.96396 0.94252 1.02578 1.22939 0.87789 0.97689 0.96022 0.90372 1.21595 0.83141 0.92424 0.97828 0.89042 1.45824 1.25353 1.51528 1.10818 1.18055 0.82556 0.79803 0.84102 1.90808 1.69847 1.52614 1.29718 1.21512 0.95003 0.95720 0.91017 1.23193 0.96360 0.98897 1.00970 1.23973 0.92139 0.88256 0.96467 1.68484 1.32540 1.21878 1.00510 1.25618 0.85518 0.89568 0.98951 1.68348 1.16361 1.10465 1.27067 1.22657 0.95172 1.00426 0.98041 1.23062 0.99891 0.89348 0.96470 1.64912 1.10135 1.31253 1.16255 1.21910 0.92846 1.02928 0.90577 1.20764 0.90350 0.82561 0.83242 1.90494 1.66797 1.56997 1.35829 1.41921 1.10126 1.62211 1.07154 1.19623 0.86769 1.45809 0.93777 0.90520 1.25998 1.04254 0.96969 0.94108 1.69669 1.38424 1.49904 0.98160 0.84956 0.77261 0.78446 0.77848 1.19694 1.19524 1.19959 0.91849 0.91566 0.93413 0.92287 0.91711 0.74293 0.81442 0.77107 0.75383 0.91059 0.89727 0.92738 0.92124 0.87217 0.90580 0.77035 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.72 71.98 0.70 -1.70 16 2 C -0.11 -2.42 5.59 30.59 0.17 -2.25 16 3 C 0.06 1.47 1.95 45.06 0.09 1.56 16 4 H 0.08 1.49 7.61 -2.39 -0.02 1.47 16 5 C 0.16 3.51 2.40 45.88 0.11 3.62 16 6 H 0.09 2.39 7.15 -2.39 -0.02 2.37 16 7 N -0.68 -12.59 4.76 -440.60 -2.10 -14.69 16 8 C 0.57 11.86 7.83 86.97 0.68 12.54 16 9 O -0.55 -14.86 16.08 -3.63 -0.06 -14.92 16 10 C 0.11 1.92 6.79 41.99 0.29 2.20 16 11 C -0.17 -2.16 9.72 22.71 0.22 -1.94 16 12 C 0.16 1.44 11.31 84.76 0.96 2.40 16 13 N -0.52 -6.30 10.42 -200.08 -2.09 -8.39 16 14 C 0.29 3.33 12.28 180.92 2.22 5.55 16 15 N -0.51 -7.42 9.70 -189.15 -1.84 -9.26 16 16 C -0.12 -3.08 6.79 31.49 0.21 -2.87 16 17 C 0.04 1.21 6.08 86.45 0.53 1.74 16 18 N -0.50 -15.86 4.56 -861.31 -3.93 -19.78 16 19 C 0.05 1.65 5.31 85.55 0.45 2.11 16 20 C 0.44 21.16 7.69 87.66 0.67 21.84 16 21 O -0.62 -34.58 15.29 -3.06 -0.05 -34.63 16 22 N -0.58 -29.57 5.29 -307.00 -1.62 -31.20 16 23 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 24 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 25 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 26 N -0.92 -49.64 13.05 21.66 0.28 -49.36 16 27 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 29 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 30 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.87 7.54 -2.39 -0.02 0.85 16 34 H 0.06 1.49 7.95 -2.38 -0.02 1.47 16 35 H 0.06 1.52 7.17 -2.39 -0.02 1.51 16 36 H 0.42 6.36 7.76 -92.71 -0.72 5.64 16 37 H 0.17 1.84 7.74 -2.91 -0.02 1.82 16 38 H 0.21 0.26 8.06 -2.91 -0.02 0.24 16 39 H 0.23 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.86 7.95 -2.39 -0.02 1.84 16 42 H 0.05 1.47 7.67 -2.39 -0.02 1.45 16 43 H 0.06 2.25 7.66 -2.39 -0.02 2.23 16 44 H 0.11 3.25 7.01 -2.39 -0.02 3.24 16 45 H 0.08 2.23 7.64 -2.38 -0.02 2.22 16 46 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 47 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -74.31 393.41 -1.21 -75.52 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.43 Total: 34.90 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 8.58 Total: 26.47 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -11.29 Total: -132.68 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.11 Total: -49.54 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.31 -1.21 -75.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692212408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.661 kcal (2) G-P(sol) polarization free energy of solvation -74.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds