Wall clock time and date at job start Wed Apr 1 2020 04:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52994 * 109.46944 * 2 1 4 4 C 1.53000 * 109.46643 * 120.00111 * 2 1 3 5 5 C 1.52995 * 109.47501 * 65.15942 * 4 2 1 6 6 H 1.09000 * 109.47066 * 305.84402 * 5 4 2 7 7 C 1.52999 * 109.47109 * 65.84297 * 5 4 2 8 8 N 1.46505 * 109.47212 * 175.00253 * 7 5 4 9 9 C 1.36935 * 120.00362 * 179.72425 * 8 7 5 10 10 H 1.08006 * 119.99555 * 0.27334 * 9 8 7 11 11 C 1.38809 * 120.00240 * 180.27173 * 9 8 7 12 12 N 1.31615 * 119.99946 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00100 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47259 * 89.99359 * 13 11 9 15 15 H 1.48499 * 109.47440 * 209.99654 * 13 11 9 16 16 H 1.48503 * 109.47176 * 329.99872 * 13 11 9 17 17 N 1.46496 * 109.47180 * 185.84419 * 5 4 2 18 18 C 1.34774 * 120.00075 * 87.74950 * 17 5 4 19 19 O 1.21595 * 120.00413 * 5.08339 * 18 17 5 20 20 C 1.47552 * 120.00030 * 185.09319 * 18 17 5 21 21 C 1.46394 * 120.24993 * 359.97438 * 20 18 17 22 22 C 1.35602 * 119.10520 * 180.02562 * 21 20 18 23 23 C 1.41172 * 119.47937 * 0.02562 * 22 21 20 24 24 N 1.32064 * 132.78934 * 179.97438 * 23 22 21 25 25 N 1.28585 * 109.71595 * 180.02562 * 24 23 22 26 26 C 1.31085 * 110.35840 * 359.97438 * 25 24 23 27 27 O 1.35692 * 126.33723 * 179.97438 * 26 25 24 28 28 N 1.36534 * 107.32958 * 359.97438 * 26 25 24 29 29 C 1.36027 * 133.10370 * 180.30591 * 28 26 25 30 30 H 1.08998 * 109.46730 * 54.47380 * 1 2 3 31 31 H 1.08998 * 109.46584 * 174.47094 * 1 2 3 32 32 H 1.08999 * 109.47015 * 294.47550 * 1 2 3 33 33 H 1.08998 * 109.47047 * 239.99992 * 2 1 3 34 34 H 1.08998 * 109.47210 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47714 * 299.99748 * 3 2 1 36 36 H 1.08998 * 109.47255 * 60.00120 * 3 2 1 37 37 H 1.08998 * 109.46975 * 305.15225 * 4 2 1 38 38 H 1.09005 * 109.46491 * 185.16109 * 4 2 1 39 39 H 1.08996 * 109.47170 * 55.00015 * 7 5 4 40 40 H 1.08999 * 109.47523 * 294.99938 * 7 5 4 41 41 H 0.96999 * 119.99618 * 359.97438 * 8 7 5 42 42 H 0.97004 * 120.00253 * 180.02562 * 12 11 9 43 43 H 0.97004 * 120.00048 * 267.74339 * 17 5 4 44 44 H 1.08004 * 120.45035 * 359.97438 * 21 20 18 45 45 H 1.07994 * 120.25827 * 180.02562 * 22 21 20 46 46 H 0.96699 * 113.99808 * 269.99533 * 27 26 25 47 47 H 1.07992 * 119.79919 * 359.93928 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6387 -2.1963 1.1861 6 1 0.5621 -2.2737 1.0343 7 6 2.3676 -2.8739 0.0240 8 7 2.0768 -4.3097 0.0358 9 6 2.6188 -5.1260 -0.9207 10 1 3.2642 -4.7120 -1.6813 11 6 2.3387 -6.4855 -0.9129 12 7 2.8592 -7.2700 -1.8326 13 14 1.2218 -7.2015 0.4021 14 1 -0.1854 -7.1669 -0.0710 15 1 1.6174 -8.6063 0.6765 16 1 1.3454 -6.4004 1.6464 17 7 2.0034 -2.8558 2.4424 18 6 1.1422 -2.8541 3.4791 19 8 0.0279 -2.3869 3.3432 20 6 1.5518 -3.4189 4.7793 21 6 2.8919 -3.9831 4.9490 22 6 3.2437 -4.4964 6.1538 23 6 2.3137 -4.4769 7.2156 24 7 2.3722 -4.8940 8.4673 25 7 1.2549 -4.6548 9.0570 26 6 0.4182 -4.0753 8.2309 27 8 -0.8494 -3.6828 8.5143 28 7 1.0581 -3.9398 7.0325 29 6 0.6863 -3.4136 5.8345 30 1 -0.3633 0.5972 -0.8364 31 1 -0.3632 -1.0229 -0.0990 32 1 -0.3633 0.4258 0.9353 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6768 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6032 -0.2635 2.1368 38 1 3.1261 -0.6419 1.2967 39 1 3.4414 -2.7198 0.1294 40 1 2.0294 -2.4425 -0.9181 41 1 1.4973 -4.6816 0.7191 42 1 2.6632 -8.2200 -1.8274 43 1 2.8646 -3.2939 2.5280 44 1 3.5908 -3.9910 4.1256 45 1 4.2277 -4.9169 6.2998 46 1 -1.5180 -4.3608 8.3460 47 1 -0.3021 -2.9950 5.7157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698873509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:35 Heat of formation + Delta-G solvation = 45.017989 kcal Electronic energy + Delta-G solvation = -30623.025658 eV Core-core repulsion = 26422.590661 eV Total energy + Delta-G solvation = -4200.434997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.94727 -40.31930 -38.39666 -38.06765 -37.27618 -35.15284 -34.34751 -33.67412 -31.91233 -31.25652 -29.49569 -29.36294 -27.16400 -25.94721 -25.32146 -24.12535 -22.93361 -22.61993 -21.74024 -20.99645 -19.81880 -19.68535 -18.63995 -17.96570 -17.61506 -17.13258 -16.98842 -16.18762 -15.56214 -15.34787 -15.27378 -15.05040 -14.55295 -14.43380 -14.04254 -13.93508 -13.78053 -13.23021 -12.98793 -12.89322 -12.83113 -12.61528 -12.58058 -12.36932 -12.19724 -12.07262 -11.90903 -11.55548 -11.44242 -11.07555 -10.96964 -10.90865 -10.87935 -10.64856 -10.45624 -10.25460 -10.14423 -9.96854 -9.71917 -9.10117 -8.99672 -8.57179 -7.38090 -5.88556 -3.25444 0.02105 0.38190 1.38559 1.89643 2.52300 2.89213 3.14083 3.24765 3.27162 3.30571 3.36508 3.65508 4.02058 4.03111 4.33874 4.40667 4.47418 4.74232 4.78254 4.89745 4.93441 5.06866 5.16847 5.27181 5.35080 5.38679 5.40388 5.51759 5.55689 5.61207 5.65605 5.71315 5.73001 5.78876 5.89372 5.93337 6.01270 6.04692 6.14425 6.18603 6.32368 6.37954 6.47489 6.62613 6.76475 7.37077 7.85933 7.99453 8.00029 8.29868 9.07936 9.80061 9.98672 11.29507 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.003665 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.781827 B = 7637.009531 C =10056.418614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.119 4.119 5 C 0.129 3.871 6 H 0.097 0.903 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.249 4.249 10 H 0.092 0.908 11 C 0.010 3.990 12 N -0.930 5.930 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.279 1.279 17 N -0.702 5.702 18 C 0.570 3.430 19 O -0.536 6.536 20 C -0.148 4.148 21 C -0.060 4.060 22 C -0.080 4.080 23 C 0.216 3.784 24 N -0.271 5.271 25 N -0.237 5.237 26 C 0.320 3.680 27 O -0.427 6.427 28 N -0.406 5.406 29 C 0.138 3.862 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.362 0.638 42 H 0.261 0.739 43 H 0.405 0.595 44 H 0.159 0.841 45 H 0.170 0.830 46 H 0.408 0.592 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 12.858 13.652 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.158 4.158 5 C 0.025 3.975 6 H 0.115 0.885 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.378 4.378 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.577 5.577 13 Si 0.712 3.288 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.206 1.206 17 N -0.353 5.353 18 C 0.355 3.645 19 O -0.415 6.415 20 C -0.155 4.155 21 C -0.085 4.085 22 C -0.101 4.101 23 C -0.033 4.033 24 N -0.118 5.118 25 N -0.087 5.087 26 C 0.021 3.979 27 O -0.226 6.226 28 N -0.098 5.098 29 C 0.013 3.987 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.195 0.805 42 H 0.071 0.929 43 H 0.241 0.759 44 H 0.176 0.824 45 H 0.187 0.813 46 H 0.265 0.735 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.579 13.046 15.003 20.048 hybrid contribution -1.340 -0.766 -0.374 1.588 sum -3.919 12.280 14.629 19.498 Atomic orbital electron populations 1.21883 0.95142 1.02187 1.01383 1.21139 0.96110 0.95958 0.98424 1.21821 1.00842 0.96070 1.01474 1.21980 1.01197 0.94179 0.98436 1.21548 1.01985 0.91378 0.82618 0.88487 1.21013 0.97089 0.85153 0.94665 1.42701 1.59630 1.02835 1.34944 1.19026 1.24031 0.89082 1.05683 0.89050 1.24644 0.99888 0.96056 0.98065 1.69688 1.48024 1.04644 1.35383 0.86620 0.81448 0.78634 0.82133 1.21066 1.21623 1.20579 1.45893 1.20256 1.56113 1.12990 1.17517 0.84888 0.79012 0.83059 1.90813 1.19830 1.47257 1.83579 1.20679 0.95012 1.05183 0.94652 1.22387 0.94208 0.94265 0.97647 1.20234 0.99236 1.01704 0.88879 1.22173 0.85308 0.99387 0.96472 1.74973 1.14149 1.21226 1.01409 1.74535 0.97972 1.12302 1.23847 1.21854 0.89962 1.04859 0.81273 1.85012 1.10359 1.41976 1.85258 1.44012 1.14754 1.40898 1.10108 1.21743 1.01018 0.94444 0.81463 0.92942 0.92159 0.92853 0.90167 0.92749 0.92756 0.93033 0.91712 0.91462 0.94874 0.93537 0.80522 0.92925 0.75860 0.82353 0.81272 0.73463 0.79683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.82 37.16 0.33 -1.31 16 2 C -0.10 -1.03 2.80 -90.62 -0.25 -1.28 16 3 C -0.14 -1.30 9.19 37.15 0.34 -0.96 16 4 C -0.12 -1.31 4.45 -26.73 -0.12 -1.43 16 5 C 0.13 1.74 2.16 -67.94 -0.15 1.59 16 6 H 0.10 1.50 5.72 -51.93 -0.30 1.20 16 7 C 0.15 2.43 5.49 -4.04 -0.02 2.41 16 8 N -0.75 -16.12 5.24 -59.91 -0.31 -16.43 16 9 C -0.25 -6.54 10.47 -15.06 -0.16 -6.70 16 10 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 11 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 12 N -0.93 -28.04 13.97 55.49 0.78 -27.27 16 13 Si 0.88 21.26 27.74 -169.99 -4.71 16.55 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 17 N -0.70 -8.80 4.44 -54.85 -0.24 -9.05 16 18 C 0.57 7.41 7.76 -12.46 -0.10 7.32 16 19 O -0.54 -8.36 15.88 5.28 0.08 -8.27 16 20 C -0.15 -1.61 5.98 -103.45 -0.62 -2.23 16 21 C -0.06 -0.54 9.73 -37.24 -0.36 -0.90 16 22 C -0.08 -0.73 10.09 -39.41 -0.40 -1.12 16 23 C 0.22 2.58 7.91 -155.70 -1.23 1.35 16 24 N -0.27 -3.76 12.28 31.26 0.38 -3.38 16 25 N -0.24 -3.28 12.19 29.73 0.36 -2.92 16 26 C 0.32 3.71 9.38 -88.51 -0.83 2.88 16 27 O -0.43 -3.63 13.65 -18.78 -0.26 -3.89 16 28 N -0.41 -4.60 2.95 -63.68 -0.19 -4.78 16 29 C 0.14 1.44 10.54 -16.33 -0.17 1.27 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.74 6.72 -51.93 -0.35 0.39 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.90 6.48 -51.93 -0.34 0.57 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.78 6.72 -51.93 -0.35 0.43 16 41 H 0.36 7.76 5.19 -40.82 -0.21 7.55 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.41 4.49 6.75 -40.82 -0.28 4.21 16 44 H 0.16 1.06 6.59 -52.48 -0.35 0.71 16 45 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.41 1.31 9.06 45.56 0.41 1.72 16 47 H 0.19 1.72 7.58 -52.49 -0.40 1.33 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -34.87 389.72 -7.62 -42.49 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.55 Total: 10.01 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -3.83 Total: 1.07 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: 0.78 Total: -63.83 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.17 Total: -12.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.87 -7.62 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698873509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.510 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds