Wall clock time and date at job start Wed Apr 1 2020 04:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52994 * 109.46944 * 2 1 4 4 C 1.53000 * 109.46643 * 120.00111 * 2 1 3 5 5 C 1.52995 * 109.47501 * 65.15942 * 4 2 1 6 6 H 1.09000 * 109.47066 * 305.84402 * 5 4 2 7 7 C 1.52999 * 109.47109 * 65.84297 * 5 4 2 8 8 N 1.46505 * 109.47212 * 175.00253 * 7 5 4 9 9 C 1.36935 * 120.00362 * 179.72425 * 8 7 5 10 10 H 1.08006 * 119.99555 * 0.27334 * 9 8 7 11 11 C 1.38809 * 120.00240 * 180.27173 * 9 8 7 12 12 N 1.31615 * 119.99946 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00100 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47259 * 89.99359 * 13 11 9 15 15 H 1.48499 * 109.47440 * 209.99654 * 13 11 9 16 16 H 1.48503 * 109.47176 * 329.99872 * 13 11 9 17 17 N 1.46496 * 109.47180 * 185.84419 * 5 4 2 18 18 C 1.34774 * 120.00075 * 87.74950 * 17 5 4 19 19 O 1.21595 * 120.00413 * 5.08339 * 18 17 5 20 20 C 1.47552 * 120.00030 * 185.09319 * 18 17 5 21 21 C 1.46394 * 120.24993 * 359.97438 * 20 18 17 22 22 C 1.35602 * 119.10520 * 180.02562 * 21 20 18 23 23 C 1.41172 * 119.47937 * 0.02562 * 22 21 20 24 24 N 1.32064 * 132.78934 * 179.97438 * 23 22 21 25 25 N 1.28585 * 109.71595 * 180.02562 * 24 23 22 26 26 C 1.31085 * 110.35840 * 359.97438 * 25 24 23 27 27 O 1.35692 * 126.33723 * 179.97438 * 26 25 24 28 28 N 1.36534 * 107.32958 * 359.97438 * 26 25 24 29 29 C 1.36027 * 133.10370 * 180.30591 * 28 26 25 30 30 H 1.08998 * 109.46730 * 54.47380 * 1 2 3 31 31 H 1.08998 * 109.46584 * 174.47094 * 1 2 3 32 32 H 1.08999 * 109.47015 * 294.47550 * 1 2 3 33 33 H 1.08998 * 109.47047 * 239.99992 * 2 1 3 34 34 H 1.08998 * 109.47210 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47714 * 299.99748 * 3 2 1 36 36 H 1.08998 * 109.47255 * 60.00120 * 3 2 1 37 37 H 1.08998 * 109.46975 * 305.15225 * 4 2 1 38 38 H 1.09005 * 109.46491 * 185.16109 * 4 2 1 39 39 H 1.08996 * 109.47170 * 55.00015 * 7 5 4 40 40 H 1.08999 * 109.47523 * 294.99938 * 7 5 4 41 41 H 0.96999 * 119.99618 * 359.97438 * 8 7 5 42 42 H 0.97004 * 120.00253 * 180.02562 * 12 11 9 43 43 H 0.97004 * 120.00048 * 267.74339 * 17 5 4 44 44 H 1.08004 * 120.45035 * 359.97438 * 21 20 18 45 45 H 1.07994 * 120.25827 * 180.02562 * 22 21 20 46 46 H 0.96699 * 113.99808 * 269.99533 * 27 26 25 47 47 H 1.07992 * 119.79919 * 359.93928 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6387 -2.1963 1.1861 6 1 0.5621 -2.2737 1.0343 7 6 2.3676 -2.8739 0.0240 8 7 2.0768 -4.3097 0.0358 9 6 2.6188 -5.1260 -0.9207 10 1 3.2642 -4.7120 -1.6813 11 6 2.3387 -6.4855 -0.9129 12 7 2.8592 -7.2700 -1.8326 13 14 1.2218 -7.2015 0.4021 14 1 -0.1854 -7.1669 -0.0710 15 1 1.6174 -8.6063 0.6765 16 1 1.3454 -6.4004 1.6464 17 7 2.0034 -2.8558 2.4424 18 6 1.1422 -2.8541 3.4791 19 8 0.0279 -2.3869 3.3432 20 6 1.5518 -3.4189 4.7793 21 6 2.8919 -3.9831 4.9490 22 6 3.2437 -4.4964 6.1538 23 6 2.3137 -4.4769 7.2156 24 7 2.3722 -4.8940 8.4673 25 7 1.2549 -4.6548 9.0570 26 6 0.4182 -4.0753 8.2309 27 8 -0.8494 -3.6828 8.5143 28 7 1.0581 -3.9398 7.0325 29 6 0.6863 -3.4136 5.8345 30 1 -0.3633 0.5972 -0.8364 31 1 -0.3632 -1.0229 -0.0990 32 1 -0.3633 0.4258 0.9353 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6768 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6032 -0.2635 2.1368 38 1 3.1261 -0.6419 1.2967 39 1 3.4414 -2.7198 0.1294 40 1 2.0294 -2.4425 -0.9181 41 1 1.4973 -4.6816 0.7191 42 1 2.6632 -8.2200 -1.8274 43 1 2.8646 -3.2939 2.5280 44 1 3.5908 -3.9910 4.1256 45 1 4.2277 -4.9169 6.2998 46 1 -1.5180 -4.3608 8.3460 47 1 -0.3021 -2.9950 5.7157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698873509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:34 Heat of formation + Delta-G solvation = 18.748764 kcal Electronic energy + Delta-G solvation = -30624.164777 eV Core-core repulsion = 26422.590661 eV Total energy + Delta-G solvation = -4201.574116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.80489 -41.33213 -39.26015 -38.85128 -38.28770 -36.44861 -35.44601 -34.78454 -33.35248 -32.55356 -30.67269 -30.20815 -27.97543 -27.35197 -26.25403 -24.93037 -24.15691 -23.75763 -23.00344 -21.98169 -20.69742 -20.60673 -19.80092 -19.36905 -18.45308 -18.24925 -17.85456 -17.18643 -16.85852 -16.19177 -16.13182 -16.08766 -16.00322 -15.44963 -15.32750 -14.87801 -14.74063 -14.59659 -14.33960 -13.90717 -13.75497 -13.71017 -13.66757 -13.44433 -13.23030 -13.01372 -12.87845 -12.85789 -12.60594 -12.30835 -12.21055 -12.00493 -11.91135 -11.80716 -11.73080 -11.55267 -11.35427 -11.23587 -10.96479 -10.85371 -10.09936 -9.38211 -9.28923 -8.01627 -5.34427 -0.80074 -0.38050 0.56473 1.03142 1.33471 1.38442 1.44795 1.63267 1.94412 2.26750 2.46669 2.49018 2.88576 3.17963 3.29582 3.31573 3.48965 3.55601 3.61359 3.84432 4.03952 4.07124 4.11862 4.19301 4.33684 4.41847 4.56485 4.58483 4.69076 4.78911 4.81038 4.85221 4.90961 4.97931 5.01494 5.06457 5.07628 5.13746 5.17111 5.31222 5.38862 5.45894 5.51302 5.58457 5.79151 6.18892 6.21810 6.39114 7.01727 7.08970 7.10961 7.84277 8.01757 9.19737 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.003665 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.781827 B = 7637.009531 C =10056.418614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.109 4.109 5 C 0.140 3.860 6 H 0.079 0.921 7 C 0.147 3.853 8 N -0.756 5.756 9 C -0.226 4.226 10 H 0.064 0.936 11 C -0.055 4.055 12 N -0.981 5.981 13 Si 0.942 3.058 14 H -0.291 1.291 15 H -0.297 1.297 16 H -0.249 1.249 17 N -0.699 5.699 18 C 0.572 3.428 19 O -0.565 6.565 20 C -0.154 4.154 21 C -0.051 4.051 22 C -0.079 4.079 23 C 0.211 3.789 24 N -0.302 5.302 25 N -0.270 5.270 26 C 0.329 3.671 27 O -0.427 6.427 28 N -0.408 5.408 29 C 0.141 3.859 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.364 0.636 42 H 0.257 0.743 43 H 0.414 0.586 44 H 0.185 0.815 45 H 0.197 0.803 46 H 0.431 0.569 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 14.248 14.737 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.198 4.198 4 C -0.148 4.148 5 C 0.035 3.965 6 H 0.097 0.903 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.357 4.357 10 H 0.082 0.918 11 C -0.247 4.247 12 N -0.632 5.632 13 Si 0.770 3.230 14 H -0.218 1.218 15 H -0.224 1.224 16 H -0.173 1.173 17 N -0.350 5.350 18 C 0.359 3.641 19 O -0.446 6.446 20 C -0.161 4.161 21 C -0.076 4.076 22 C -0.100 4.100 23 C -0.040 4.040 24 N -0.148 5.148 25 N -0.119 5.119 26 C 0.028 3.972 27 O -0.230 6.230 28 N -0.100 5.100 29 C 0.016 3.984 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.197 0.803 42 H 0.066 0.934 43 H 0.252 0.748 44 H 0.202 0.798 45 H 0.214 0.786 46 H 0.293 0.707 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.508 14.474 16.133 21.819 hybrid contribution -1.403 -1.073 -0.789 1.935 sum -3.911 13.401 15.344 20.744 Atomic orbital electron populations 1.21864 0.95650 1.01176 1.01751 1.21147 0.95683 0.97043 0.97828 1.21782 1.01299 0.94760 1.01969 1.21903 1.02151 0.92095 0.98603 1.21330 1.00470 0.92686 0.82014 0.90312 1.21174 0.98194 0.82479 0.96036 1.42686 1.59233 1.04445 1.33784 1.19024 1.22035 0.89442 1.05206 0.91765 1.25337 1.02166 0.96718 1.00515 1.69853 1.50607 1.04733 1.37975 0.85615 0.78796 0.77725 0.80831 1.21755 1.22423 1.17293 1.45837 1.20613 1.56069 1.12502 1.17715 0.84348 0.78457 0.83595 1.90805 1.21066 1.48576 1.84125 1.20569 0.96111 1.05804 0.93611 1.22628 0.93554 0.93141 0.98259 1.20583 0.99823 1.01591 0.88008 1.22638 0.85905 0.98906 0.96515 1.74881 1.14637 1.22779 1.02548 1.74445 0.98615 1.13904 1.24918 1.21913 0.90655 1.03583 0.81075 1.84978 1.09734 1.43095 1.85152 1.44065 1.14709 1.41045 1.10218 1.21882 1.01413 0.93955 0.81115 0.92046 0.93960 0.92897 0.90948 0.91984 0.92235 0.92624 0.91684 0.89857 0.93415 0.93703 0.80331 0.93444 0.74815 0.79834 0.78647 0.70715 0.78830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.82 71.99 0.63 -2.42 16 2 C -0.10 -1.88 2.80 -10.79 -0.03 -1.91 16 3 C -0.14 -2.17 9.19 71.98 0.66 -1.51 16 4 C -0.11 -2.12 4.45 30.59 0.14 -1.99 16 5 C 0.14 3.48 2.16 44.99 0.10 3.57 16 6 H 0.08 2.32 5.72 -2.39 -0.01 2.31 16 7 C 0.15 4.55 5.49 86.38 0.47 5.02 16 8 N -0.76 -30.94 5.24 -343.45 -1.80 -32.74 16 9 C -0.23 -11.79 10.47 84.03 0.88 -10.91 16 10 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 11 C -0.06 -3.08 5.50 84.86 0.47 -2.62 16 12 N -0.98 -60.17 13.97 21.65 0.30 -59.86 16 13 Si 0.94 43.36 27.74 68.60 1.90 45.26 16 14 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 15 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 16 H -0.25 -10.00 6.52 99.48 0.65 -9.35 16 17 N -0.70 -15.58 4.44 -445.70 -1.98 -17.56 16 18 C 0.57 13.51 7.76 86.70 0.67 14.18 16 19 O -0.57 -16.66 15.88 -4.01 -0.06 -16.72 16 20 C -0.15 -2.93 5.98 -19.11 -0.11 -3.05 16 21 C -0.05 -0.75 9.73 23.78 0.23 -0.51 16 22 C -0.08 -1.23 10.09 22.38 0.23 -1.00 16 23 C 0.21 4.69 7.91 134.08 1.06 5.75 16 24 N -0.30 -8.22 12.28 -55.01 -0.68 -8.90 16 25 N -0.27 -7.36 12.19 -173.30 -2.11 -9.47 16 26 C 0.33 7.24 9.38 179.61 1.69 8.93 16 27 O -0.43 -6.59 13.65 -90.11 -1.23 -7.82 16 28 N -0.41 -8.59 2.95 -465.98 -1.38 -9.96 16 29 C 0.14 2.66 10.54 83.63 0.88 3.55 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 1.02 6.72 -2.39 -0.02 1.00 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.51 6.48 -2.39 -0.02 1.49 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.44 6.72 -2.39 -0.02 1.43 16 41 H 0.36 14.69 5.19 -92.71 -0.48 14.21 16 42 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.41 7.71 6.75 -92.71 -0.63 7.09 16 44 H 0.18 1.67 6.59 -2.91 -0.02 1.65 16 45 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 46 H 0.43 1.95 9.06 -74.06 -0.67 1.28 16 47 H 0.19 3.25 7.58 -2.91 -0.02 3.23 16 Total: -1.00 -76.10 389.72 0.14 -75.97 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -0.79 Total: 26.73 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 7.96 Total: 15.09 kcal Atomic # 7 Polarization: -130.86 SS G_CDS: -7.64 Total: -138.50 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -1.29 Total: -24.54 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.90 Total: 45.26 kcal Total: -76.10 0.14 -75.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698873509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.714 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds