Wall clock time and date at job start Wed Apr 1 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47333 * 2 1 4 4 H 1.08995 * 109.47129 * 302.84138 * 3 2 1 5 5 C 1.52997 * 109.47058 * 182.84032 * 3 2 1 6 6 C 1.53008 * 109.47165 * 65.00628 * 5 3 2 7 7 F 1.39897 * 109.47274 * 175.00156 * 6 5 3 8 8 F 1.39904 * 109.46633 * 294.99878 * 6 5 3 9 9 C 1.50696 * 109.46982 * 62.84319 * 3 2 1 10 10 O 1.21289 * 119.99972 * 35.06172 * 9 3 2 11 11 N 1.34775 * 120.00237 * 215.06972 * 9 3 2 12 12 C 1.46502 * 120.00090 * 175.03213 * 11 9 3 13 13 C 1.52999 * 109.46736 * 179.97438 * 12 11 9 14 14 H 1.09003 * 112.96396 * 72.85913 * 13 12 11 15 15 C 1.53943 * 113.75647 * 204.50548 * 13 12 11 16 16 C 1.53932 * 86.45550 * 137.98543 * 15 13 12 17 17 N 1.47960 * 113.75781 * 301.06071 * 13 12 11 18 18 C 1.46905 * 111.00004 * 108.10560 * 17 13 12 19 19 C 1.50694 * 109.47260 * 189.99669 * 18 17 13 20 20 O 1.21298 * 120.00085 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99877 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99582 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00471 * 0.02562 * 22 21 19 24 24 C 1.38957 * 119.99440 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99933 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99512 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47444 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46873 * 120.00317 * 26 24 22 29 29 H 1.48500 * 109.46920 * 239.99937 * 26 24 22 30 30 H 1.08997 * 109.47729 * 174.89815 * 1 2 3 31 31 H 1.09001 * 109.46931 * 294.89819 * 1 2 3 32 32 H 1.09003 * 109.47510 * 54.89556 * 1 2 3 33 33 H 1.09012 * 109.46833 * 240.00520 * 2 1 3 34 34 H 1.08995 * 109.47719 * 120.00799 * 2 1 3 35 35 H 1.09005 * 109.46863 * 185.00079 * 5 3 2 36 36 H 1.08996 * 109.47579 * 305.00214 * 5 3 2 37 37 H 1.08997 * 109.47253 * 54.99218 * 6 5 3 38 38 H 0.96999 * 119.99494 * 355.02686 * 11 9 3 39 39 H 1.08996 * 109.47360 * 59.99890 * 12 11 9 40 40 H 1.08999 * 109.46861 * 299.99237 * 12 11 9 41 41 H 1.09001 * 113.73058 * 252.39764 * 15 13 12 42 42 H 1.08995 * 113.73430 * 23.56655 * 15 13 12 43 43 H 1.09001 * 113.76441 * 90.65150 * 16 15 13 44 44 H 1.09005 * 113.75379 * 222.01051 * 16 15 13 45 45 H 1.09004 * 109.46801 * 310.00348 * 18 17 13 46 46 H 1.09001 * 109.47149 * 69.99688 * 18 17 13 47 47 H 0.96997 * 120.00417 * 0.02562 * 21 19 18 48 48 H 0.97006 * 119.99568 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6357 1.9708 -0.8634 5 6 3.5683 1.4430 -0.0715 6 6 4.0164 0.8553 -1.4112 7 9 5.4068 0.9601 -1.5247 8 9 3.6432 -0.4914 -1.4778 9 6 1.5960 2.1322 1.2642 10 8 1.5300 1.5102 2.3033 11 7 1.2722 3.4403 1.2401 12 6 0.7373 4.0847 2.4421 13 6 0.4556 5.5594 2.1476 14 1 -0.4180 5.7069 1.5126 15 6 0.4710 6.4557 3.3991 16 6 1.2417 7.4759 2.5419 17 7 1.6481 6.3184 1.7107 18 6 1.5708 6.6426 0.2800 19 6 2.8954 7.1923 -0.1829 20 8 3.8138 7.3026 0.6018 21 7 3.0599 7.5603 -1.4690 22 6 4.2652 8.0598 -1.8901 23 1 5.0829 8.1581 -1.1915 24 6 4.4346 8.4398 -3.2160 25 7 3.4395 8.3207 -4.0659 26 14 6.0770 9.1198 -3.7900 27 1 7.0256 9.1527 -2.6479 28 1 6.6241 8.2518 -4.8636 29 1 5.8869 10.4959 -4.3147 30 1 -0.3634 -1.0235 -0.0914 31 1 -0.3633 0.4327 0.9322 32 1 -0.3634 0.5910 -0.8407 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 3.9358 2.4653 0.0179 36 1 3.9704 0.8399 0.7425 37 1 3.5430 1.4042 -2.2253 38 1 1.3934 3.9550 0.4269 39 1 1.4652 4.0085 3.2498 40 1 -0.1876 3.5899 2.7385 41 1 -0.5174 6.7980 3.7057 42 1 1.0537 6.0468 4.2244 43 1 0.5995 8.1864 2.0215 44 1 2.0693 7.9537 3.0663 45 1 1.3342 5.7407 -0.2847 46 1 0.7917 7.3875 0.1178 47 1 2.3256 7.4717 -2.0966 48 1 3.5579 8.5856 -4.9915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699624534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:47 Heat of formation + Delta-G solvation = -153.099609 kcal Electronic energy + Delta-G solvation = -31699.537260 eV Core-core repulsion = 27039.822053 eV Total energy + Delta-G solvation = -4659.715207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.13062 -47.12621 -40.48817 -39.66687 -37.79987 -35.66338 -34.57891 -33.95531 -31.53923 -31.41901 -30.68122 -28.80449 -26.52942 -25.84078 -23.77472 -23.62512 -22.83016 -22.03174 -20.27065 -19.50667 -19.34229 -18.13683 -17.96698 -17.51287 -16.99547 -16.36652 -16.24849 -16.14464 -15.61482 -15.28566 -14.98664 -14.63159 -14.37715 -14.23245 -14.06351 -13.93278 -13.79481 -13.73174 -13.64370 -13.41755 -13.09751 -12.74307 -12.58498 -12.46847 -12.12609 -11.99096 -11.65133 -11.56182 -11.39684 -11.32961 -11.14305 -11.11962 -11.05207 -10.89508 -10.88066 -10.72100 -10.38307 -10.26976 -9.76281 -9.56537 -9.08823 -8.82814 -8.25506 -8.02080 -6.47581 -3.88293 2.52265 3.00046 3.12442 3.23894 3.30841 3.66780 3.79644 3.84763 4.09430 4.16822 4.23687 4.32910 4.42416 4.63787 4.65664 4.70794 4.90421 4.92718 4.95056 5.05300 5.13705 5.22095 5.25511 5.34857 5.36623 5.39325 5.43933 5.56532 5.59259 5.61777 5.69351 5.72120 5.81602 5.88620 5.90244 6.04977 6.14266 6.15149 6.18625 6.34617 6.51321 7.08567 7.43242 7.50213 8.00368 8.15906 8.55680 9.13188 9.47983 10.00142 10.70131 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007318 B = 0.003724 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3825.246482 B = 7516.691430 C =10500.817444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.105 4.105 4 H 0.095 0.905 5 C -0.164 4.164 6 C 0.266 3.734 7 F -0.202 7.202 8 F -0.201 7.201 9 C 0.524 3.476 10 O -0.539 6.539 11 N -0.720 5.720 12 C 0.143 3.857 13 C 0.006 3.994 14 H 0.083 0.917 15 C -0.133 4.133 16 C 0.011 3.989 17 N -0.441 5.441 18 C 0.009 3.991 19 C 0.444 3.556 20 O -0.572 6.572 21 N -0.566 5.566 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.927 3.073 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.401 0.599 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 -11.556 6.090 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C -0.126 4.126 4 H 0.113 0.887 5 C -0.202 4.202 6 C 0.212 3.788 7 F -0.184 7.184 8 F -0.183 7.183 9 C 0.309 3.691 10 O -0.416 6.416 11 N -0.372 5.372 12 C 0.019 3.981 13 C -0.104 4.104 14 H 0.101 0.899 15 C -0.172 4.172 16 C -0.118 4.118 17 N -0.164 5.164 18 C -0.123 4.123 19 C 0.229 3.771 20 O -0.454 6.454 21 N -0.204 5.204 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.544 5.544 26 Si 0.754 3.246 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.237 0.763 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.985 -12.182 7.229 16.775 hybrid contribution -0.354 1.034 -1.584 1.924 sum -9.339 -11.148 5.645 15.600 Atomic orbital electron populations 1.21794 0.95648 1.01863 1.01763 1.21905 0.96338 0.93619 1.04855 1.21315 0.95217 0.98883 0.97222 0.88709 1.22610 0.95392 1.04977 0.97233 1.21899 0.77074 0.79291 1.00544 1.93012 1.32070 1.95981 1.97296 1.92875 1.90359 1.37363 1.97659 1.20325 0.76772 0.81754 0.90211 1.90685 1.53003 1.65327 1.32614 1.45997 1.65656 1.09945 1.15555 1.21259 0.98866 0.89931 0.88034 1.23815 0.94279 0.94146 0.98161 0.89907 1.23330 1.00847 0.96253 0.96730 1.23887 0.98964 0.93520 0.95384 1.68463 1.33321 1.11076 1.03552 1.22528 0.98010 1.00397 0.91352 1.19640 0.89203 0.84870 0.83409 1.90547 1.42518 1.58548 1.53837 1.41884 1.14217 1.56283 1.07973 1.19739 0.90752 1.37880 0.94370 0.87914 1.25235 0.99103 0.97765 0.95722 1.69612 1.31531 1.48441 1.04813 0.85829 0.81591 0.78341 0.78798 1.19202 1.20698 1.20765 0.92426 0.92644 0.92889 0.88767 0.90528 0.87641 0.88469 0.86781 0.76334 0.90666 0.91269 0.90819 0.88815 0.91311 0.88829 0.90334 0.92253 0.77648 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.60 37.15 0.36 -1.06 16 2 C -0.13 -1.28 4.71 -26.73 -0.13 -1.40 16 3 C -0.10 -1.05 2.21 -91.77 -0.20 -1.25 16 4 H 0.09 0.76 8.13 -51.93 -0.42 0.33 16 5 C -0.16 -1.71 5.00 -26.73 -0.13 -1.85 16 6 C 0.27 2.67 5.25 37.16 0.20 2.86 16 7 F -0.20 -2.60 17.34 2.25 0.04 -2.56 16 8 F -0.20 -2.14 14.11 2.25 0.03 -2.11 16 9 C 0.52 6.59 5.91 -10.99 -0.06 6.52 16 10 O -0.54 -8.51 15.86 5.55 0.09 -8.42 16 11 N -0.72 -8.40 5.50 -60.30 -0.33 -8.74 16 12 C 0.14 1.62 5.81 -4.04 -0.02 1.59 16 13 C 0.01 0.07 3.39 -66.65 -0.23 -0.16 16 14 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 15 C -0.13 -1.31 7.83 -25.80 -0.20 -1.51 16 16 C 0.01 0.14 7.97 -2.63 -0.02 0.12 16 17 N -0.44 -6.45 5.33 -231.91 -1.24 -7.69 16 18 C 0.01 0.15 5.12 -4.98 -0.03 0.12 16 19 C 0.44 9.84 7.83 -10.99 -0.09 9.75 16 20 O -0.57 -15.03 16.01 5.54 0.09 -14.95 16 21 N -0.57 -13.53 5.29 -10.96 -0.06 -13.59 16 22 C -0.30 -8.01 9.68 -14.93 -0.14 -8.15 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -23.64 13.05 55.50 0.72 -22.91 16 26 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.59 7.21 -51.93 -0.37 0.22 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.86 5.24 -51.92 -0.27 0.59 16 34 H 0.08 0.87 7.76 -51.93 -0.40 0.47 16 35 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.40 4.44 6.54 -40.82 -0.27 4.17 16 39 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.93 7.94 -51.93 -0.41 0.51 16 43 H 0.07 0.82 7.49 -51.93 -0.39 0.43 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.08 1.04 6.40 -51.93 -0.33 0.71 16 46 H 0.06 0.84 7.39 -51.93 -0.38 0.45 16 47 H 0.39 8.85 7.90 -40.82 -0.32 8.53 16 48 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -33.05 397.60 -7.78 -40.83 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -7.29 Total: 12.50 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.80 Total: 6.10 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.90 Total: -52.93 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.67 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.05 -7.78 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699624534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.268 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds