Wall clock time and date at job start Wed Apr 1 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47333 * 2 1 4 4 H 1.08995 * 109.47129 * 302.84138 * 3 2 1 5 5 C 1.52997 * 109.47058 * 182.84032 * 3 2 1 6 6 C 1.53008 * 109.47165 * 65.00628 * 5 3 2 7 7 F 1.39897 * 109.47274 * 175.00156 * 6 5 3 8 8 F 1.39904 * 109.46633 * 294.99878 * 6 5 3 9 9 C 1.50696 * 109.46982 * 62.84319 * 3 2 1 10 10 O 1.21289 * 119.99972 * 35.06172 * 9 3 2 11 11 N 1.34775 * 120.00237 * 215.06972 * 9 3 2 12 12 C 1.46502 * 120.00090 * 175.03213 * 11 9 3 13 13 C 1.52999 * 109.46736 * 179.97438 * 12 11 9 14 14 H 1.09003 * 112.96396 * 72.85913 * 13 12 11 15 15 C 1.53943 * 113.75647 * 204.50548 * 13 12 11 16 16 C 1.53932 * 86.45550 * 137.98543 * 15 13 12 17 17 N 1.47960 * 113.75781 * 301.06071 * 13 12 11 18 18 C 1.46905 * 111.00004 * 108.10560 * 17 13 12 19 19 C 1.50694 * 109.47260 * 189.99669 * 18 17 13 20 20 O 1.21298 * 120.00085 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99877 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99582 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00471 * 0.02562 * 22 21 19 24 24 C 1.38957 * 119.99440 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99933 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99512 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47444 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46873 * 120.00317 * 26 24 22 29 29 H 1.48500 * 109.46920 * 239.99937 * 26 24 22 30 30 H 1.08997 * 109.47729 * 174.89815 * 1 2 3 31 31 H 1.09001 * 109.46931 * 294.89819 * 1 2 3 32 32 H 1.09003 * 109.47510 * 54.89556 * 1 2 3 33 33 H 1.09012 * 109.46833 * 240.00520 * 2 1 3 34 34 H 1.08995 * 109.47719 * 120.00799 * 2 1 3 35 35 H 1.09005 * 109.46863 * 185.00079 * 5 3 2 36 36 H 1.08996 * 109.47579 * 305.00214 * 5 3 2 37 37 H 1.08997 * 109.47253 * 54.99218 * 6 5 3 38 38 H 0.96999 * 119.99494 * 355.02686 * 11 9 3 39 39 H 1.08996 * 109.47360 * 59.99890 * 12 11 9 40 40 H 1.08999 * 109.46861 * 299.99237 * 12 11 9 41 41 H 1.09001 * 113.73058 * 252.39764 * 15 13 12 42 42 H 1.08995 * 113.73430 * 23.56655 * 15 13 12 43 43 H 1.09001 * 113.76441 * 90.65150 * 16 15 13 44 44 H 1.09005 * 113.75379 * 222.01051 * 16 15 13 45 45 H 1.09004 * 109.46801 * 310.00348 * 18 17 13 46 46 H 1.09001 * 109.47149 * 69.99688 * 18 17 13 47 47 H 0.96997 * 120.00417 * 0.02562 * 21 19 18 48 48 H 0.97006 * 119.99568 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6357 1.9708 -0.8634 5 6 3.5683 1.4430 -0.0715 6 6 4.0164 0.8553 -1.4112 7 9 5.4068 0.9601 -1.5247 8 9 3.6432 -0.4914 -1.4778 9 6 1.5960 2.1322 1.2642 10 8 1.5300 1.5102 2.3033 11 7 1.2722 3.4403 1.2401 12 6 0.7373 4.0847 2.4421 13 6 0.4556 5.5594 2.1476 14 1 -0.4180 5.7069 1.5126 15 6 0.4710 6.4557 3.3991 16 6 1.2417 7.4759 2.5419 17 7 1.6481 6.3184 1.7107 18 6 1.5708 6.6426 0.2800 19 6 2.8954 7.1923 -0.1829 20 8 3.8138 7.3026 0.6018 21 7 3.0599 7.5603 -1.4690 22 6 4.2652 8.0598 -1.8901 23 1 5.0829 8.1581 -1.1915 24 6 4.4346 8.4398 -3.2160 25 7 3.4395 8.3207 -4.0659 26 14 6.0770 9.1198 -3.7900 27 1 7.0256 9.1527 -2.6479 28 1 6.6241 8.2518 -4.8636 29 1 5.8869 10.4959 -4.3147 30 1 -0.3634 -1.0235 -0.0914 31 1 -0.3633 0.4327 0.9322 32 1 -0.3634 0.5910 -0.8407 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 3.9358 2.4653 0.0179 36 1 3.9704 0.8399 0.7425 37 1 3.5430 1.4042 -2.2253 38 1 1.3934 3.9550 0.4269 39 1 1.4652 4.0085 3.2498 40 1 -0.1876 3.5899 2.7385 41 1 -0.5174 6.7980 3.7057 42 1 1.0537 6.0468 4.2244 43 1 0.5995 8.1864 2.0215 44 1 2.0693 7.9537 3.0663 45 1 1.3342 5.7407 -0.2847 46 1 0.7917 7.3875 0.1178 47 1 2.3256 7.4717 -2.0966 48 1 3.5579 8.5856 -4.9915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699624534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:47 Heat of formation + Delta-G solvation = -177.691629 kcal Electronic energy + Delta-G solvation = -31700.603651 eV Core-core repulsion = 27039.822053 eV Total energy + Delta-G solvation = -4660.781597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.00017 -48.01885 -41.50934 -40.72853 -39.50489 -36.53398 -35.92381 -35.56555 -33.28752 -32.33157 -31.95376 -29.76058 -27.48822 -27.35162 -25.27836 -24.52580 -23.63779 -22.92447 -21.21980 -21.03806 -20.40288 -19.88199 -19.00775 -18.37538 -17.87814 -17.73779 -17.26950 -17.17735 -16.84419 -16.52724 -16.32723 -16.05380 -15.56800 -15.46505 -15.14582 -15.10140 -14.79581 -14.76145 -14.61761 -14.37176 -14.22054 -14.00653 -13.77168 -13.51864 -13.45272 -13.04412 -12.92981 -12.86435 -12.58985 -12.40263 -12.30424 -12.14665 -12.13224 -11.98323 -11.87288 -11.83165 -11.76485 -11.66034 -11.47849 -10.75239 -10.33838 -10.07000 -9.97231 -9.60716 -8.45010 -5.92293 1.36549 1.42961 1.54166 1.55500 2.06885 2.11309 2.29727 2.73673 2.90587 3.21733 3.30142 3.38016 3.42649 3.48997 3.61485 3.77830 3.79504 3.91017 4.08338 4.13742 4.18232 4.25835 4.30816 4.37112 4.43655 4.45465 4.54106 4.60206 4.62325 4.67184 4.83050 4.85002 4.89694 4.91435 4.99838 5.17904 5.24670 5.27500 5.33471 5.40779 5.43949 5.53694 5.94886 6.13569 6.49247 6.64340 7.17148 7.20106 7.60883 8.18198 8.72237 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007318 B = 0.003724 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3825.246482 B = 7516.691430 C =10500.817444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.100 4.100 4 H 0.124 0.876 5 C -0.160 4.160 6 C 0.264 3.736 7 F -0.220 7.220 8 F -0.204 7.204 9 C 0.521 3.479 10 O -0.577 6.577 11 N -0.715 5.715 12 C 0.143 3.857 13 C 0.020 3.980 14 H 0.112 0.888 15 C -0.116 4.116 16 C 0.002 3.998 17 N -0.476 5.476 18 C 0.023 3.977 19 C 0.442 3.558 20 O -0.619 6.619 21 N -0.574 5.574 22 C -0.329 4.329 23 H 0.073 0.927 24 C -0.007 4.007 25 N -0.917 5.917 26 Si 0.984 3.016 27 H -0.277 1.277 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.406 0.594 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 -11.580 4.869 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.122 4.122 4 H 0.142 0.858 5 C -0.199 4.199 6 C 0.211 3.789 7 F -0.202 7.202 8 F -0.185 7.185 9 C 0.308 3.692 10 O -0.456 6.456 11 N -0.366 5.366 12 C 0.019 3.981 13 C -0.089 4.089 14 H 0.130 0.870 15 C -0.154 4.154 16 C -0.127 4.127 17 N -0.200 5.200 18 C -0.109 4.109 19 C 0.229 3.771 20 O -0.505 6.505 21 N -0.212 5.212 22 C -0.459 4.459 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.559 5.559 26 Si 0.808 3.192 27 H -0.202 1.202 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.166 0.834 38 H 0.242 0.758 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.231 0.769 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.063 -12.198 5.989 17.523 hybrid contribution 0.289 1.038 -1.122 1.555 sum -10.775 -11.160 4.867 16.258 Atomic orbital electron populations 1.21769 0.94888 1.02598 1.01465 1.21871 0.96954 0.93292 1.04237 1.21354 0.94691 0.99123 0.96990 0.85776 1.22536 0.95835 1.04177 0.97329 1.22183 0.76191 0.79333 1.01179 1.92976 1.33778 1.96068 1.97366 1.92865 1.90252 1.37751 1.97678 1.20750 0.76085 0.81889 0.90504 1.90669 1.54655 1.66150 1.34152 1.46012 1.65072 1.09726 1.15819 1.21295 0.98829 0.90697 0.87325 1.23869 0.93438 0.93039 0.98579 0.87011 1.23244 1.01861 0.94420 0.95913 1.23947 0.98764 0.93970 0.95999 1.68410 1.36244 1.12527 1.02810 1.22416 0.94072 1.01862 0.92533 1.20818 0.91078 0.82938 0.82217 1.90518 1.45016 1.60010 1.54911 1.41918 1.13543 1.56800 1.08920 1.19605 0.91565 1.40052 0.94648 0.90852 1.25871 1.02023 0.97511 0.95322 1.69651 1.32622 1.48442 1.05139 0.84999 0.77896 0.78223 0.78033 1.20217 1.19608 1.19737 0.91631 0.94422 0.91206 0.87706 0.92747 0.88506 0.89968 0.83434 0.75797 0.92959 0.89734 0.87579 0.89347 0.89968 0.91560 0.87487 0.89865 0.76940 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.60 71.98 0.69 -1.81 16 2 C -0.13 -2.34 4.71 30.59 0.14 -2.20 16 3 C -0.10 -1.87 2.21 -11.54 -0.03 -1.89 16 4 H 0.12 1.59 8.13 -2.39 -0.02 1.57 16 5 C -0.16 -3.28 5.00 30.60 0.15 -3.13 16 6 C 0.26 4.97 5.25 71.98 0.38 5.35 16 7 F -0.22 -5.58 17.34 44.97 0.78 -4.80 16 8 F -0.20 -4.08 14.11 44.97 0.63 -3.45 16 9 C 0.52 12.69 5.91 87.66 0.52 13.21 16 10 O -0.58 -18.33 15.86 -3.06 -0.05 -18.38 16 11 N -0.72 -15.50 5.50 -463.06 -2.55 -18.05 16 12 C 0.14 2.97 5.81 86.38 0.50 3.47 16 13 C 0.02 0.37 3.39 45.02 0.15 0.52 16 14 H 0.11 1.51 7.93 -2.39 -0.02 1.49 16 15 C -0.12 -1.99 7.83 31.24 0.24 -1.74 16 16 C 0.00 0.04 7.97 86.36 0.69 0.73 16 17 N -0.48 -13.20 5.33 -887.64 -4.73 -17.93 16 18 C 0.02 0.67 5.12 85.55 0.44 1.11 16 19 C 0.44 19.59 7.83 87.65 0.69 20.27 16 20 O -0.62 -33.44 16.01 -3.08 -0.05 -33.49 16 21 N -0.57 -27.47 5.29 -306.97 -1.62 -29.09 16 22 C -0.33 -17.99 9.68 84.04 0.81 -17.18 16 23 H 0.07 4.38 7.16 -2.91 -0.02 4.36 16 24 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 25 N -0.92 -47.16 13.05 21.67 0.28 -46.88 16 26 Si 0.98 41.93 29.55 68.60 2.03 43.96 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.76 7.21 -2.39 -0.02 0.74 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.73 5.24 -2.38 -0.01 1.72 16 34 H 0.05 1.25 7.76 -2.39 -0.02 1.23 16 35 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.41 7.98 6.54 -92.71 -0.61 7.37 16 39 H 0.05 1.34 7.91 -2.39 -0.02 1.32 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.62 7.94 -2.39 -0.02 1.61 16 43 H 0.08 1.77 7.49 -2.39 -0.02 1.75 16 44 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.11 2.49 6.40 -2.39 -0.02 2.48 16 46 H 0.08 2.07 7.39 -2.39 -0.02 2.05 16 47 H 0.40 17.71 7.90 -92.71 -0.73 16.97 16 48 H 0.28 13.35 8.31 -92.70 -0.77 12.58 16 Total: -1.00 -74.16 397.60 0.24 -73.92 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.34 Total: 37.37 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 5.85 Total: 16.81 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -8.62 Total: -111.94 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.10 Total: -51.87 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 1.41 Total: -8.25 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.16 0.24 -73.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699624534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.769 kcal (2) G-P(sol) polarization free energy of solvation -74.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds