Wall clock time and date at job start Wed Apr 1 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39900 * 109.47192 * 2 1 4 4 F 1.39902 * 109.46948 * 240.00075 * 2 1 3 5 5 C 1.53006 * 109.47299 * 120.00104 * 2 1 3 6 6 C 1.52998 * 109.47299 * 180.02562 * 5 2 1 7 7 C 1.50696 * 109.46959 * 180.02562 * 6 5 2 8 8 O 1.21286 * 120.00282 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99763 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99952 * 179.97438 * 9 7 6 11 11 C 1.53773 * 113.61686 * 254.13880 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.53002 * 113.62545 * 220.02302 * 12 11 10 14 14 N 1.46903 * 109.46642 * 272.49637 * 13 12 11 15 15 C 1.46903 * 110.99743 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47213 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99953 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99650 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99346 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00675 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99979 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00197 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99634 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47387 * 89.99915 * 23 21 19 25 25 H 1.48499 * 109.47141 * 209.99733 * 23 21 19 26 26 H 1.48500 * 109.47298 * 329.99840 * 23 21 19 27 27 C 1.53781 * 113.61361 * 156.53041 * 10 9 7 28 28 H 1.08999 * 109.47371 * 299.99933 * 1 2 3 29 29 H 1.09002 * 109.47178 * 59.99934 * 1 2 3 30 30 H 1.08998 * 109.47323 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46817 * 59.99832 * 5 2 1 32 32 H 1.08999 * 109.46879 * 300.00264 * 5 2 1 33 33 H 1.09001 * 109.47078 * 59.99688 * 6 5 2 34 34 H 1.09002 * 109.46665 * 300.00166 * 6 5 2 35 35 H 0.96997 * 120.00341 * 359.97438 * 9 7 6 36 36 H 1.09002 * 112.84852 * 25.33640 * 10 9 7 37 37 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 38 38 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 39 39 H 1.09005 * 113.68989 * 89.12112 * 12 11 10 40 40 H 1.09005 * 109.46483 * 32.48989 * 13 12 11 41 41 H 1.08995 * 109.47301 * 152.49438 * 13 12 11 42 42 H 1.00896 * 111.00440 * 56.04050 * 14 13 12 43 43 H 1.08998 * 109.46937 * 299.99866 * 15 14 13 44 44 H 1.09003 * 109.47232 * 59.99322 * 15 14 13 45 45 H 0.96997 * 120.00384 * 359.97438 * 18 16 15 46 46 H 0.97004 * 119.99818 * 180.02562 * 22 21 19 47 47 H 1.09001 * 113.61158 * 203.66864 * 27 10 9 48 48 H 1.08998 * 113.61196 * 334.56885 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2493 6 6 3.5700 -0.7207 1.2496 7 6 4.0723 -1.4317 2.4797 8 8 3.2842 -1.8938 3.2774 9 7 5.3974 -1.5549 2.6929 10 6 5.8857 -2.2456 3.8891 11 6 6.4542 -1.2982 4.9586 12 6 7.8147 -1.4480 4.2517 13 6 8.9977 -1.5584 5.2157 14 7 9.4810 -0.2130 5.5537 15 6 10.6191 -0.2798 6.4802 16 6 11.0869 1.1159 6.8028 17 8 10.5276 2.0722 6.3091 18 7 12.1274 1.3014 7.6392 19 6 12.5532 2.5711 7.9322 20 1 12.0553 3.4228 7.4926 21 6 13.6256 2.7625 8.7949 22 7 14.0341 3.9796 9.0754 23 14 14.4864 1.2897 9.5559 24 1 15.5966 0.8536 8.6713 25 1 15.0315 1.6670 10.8847 26 1 13.5156 0.1775 9.7167 27 6 7.3096 -2.8067 3.7383 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6767 -1.7489 1.2492 32 1 1.6767 -0.2075 2.1392 33 1 3.9330 0.3071 1.2498 34 1 3.9337 -1.2343 0.3595 35 1 6.0277 -1.1863 2.0544 36 1 5.1708 -2.9687 4.2818 37 1 6.0444 -0.2892 4.9105 38 1 6.4371 -1.7156 5.9653 39 1 7.9802 -0.7165 3.4606 40 1 8.6793 -2.0691 6.1245 41 1 9.8001 -2.1246 4.7428 42 1 8.7378 0.3532 5.9346 43 1 10.3115 -0.7815 7.3977 44 1 11.4329 -0.8374 6.0166 45 1 12.5748 0.5366 8.0338 46 1 14.7830 4.1131 9.6774 47 1 7.5257 -3.6358 4.4120 48 1 7.5897 -3.0149 2.7057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700375848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:16 Heat of formation + Delta-G solvation = -163.061497 kcal Electronic energy + Delta-G solvation = -29281.651736 eV Core-core repulsion = 24621.504549 eV Total energy + Delta-G solvation = -4660.147187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.40970 -47.37983 -40.62982 -38.96454 -38.33966 -35.37046 -34.61097 -33.94499 -33.36201 -31.66251 -31.12270 -28.71394 -26.25280 -25.97836 -25.26693 -23.55581 -22.25972 -21.93379 -20.93882 -19.59716 -19.27633 -18.33772 -18.09456 -17.90115 -16.75646 -16.54393 -16.27827 -16.05856 -16.02678 -15.64099 -15.18515 -14.78849 -14.56226 -14.37256 -13.98781 -13.92578 -13.83746 -13.70273 -13.69201 -13.41971 -13.15790 -13.07309 -12.89902 -12.74332 -12.71518 -12.45528 -12.34421 -12.14705 -11.82639 -11.74343 -11.67999 -11.34594 -11.17884 -11.05774 -10.71194 -10.59770 -10.35381 -10.23561 -9.97630 -9.57459 -9.36826 -8.59114 -8.19509 -8.13430 -6.31253 -3.82663 2.23589 2.66852 3.02001 3.06533 3.14626 3.32155 3.64104 3.74161 3.84528 3.93674 4.01457 4.10149 4.20606 4.34676 4.43562 4.52808 4.58637 4.64289 4.70368 4.91401 4.93715 4.98525 5.02083 5.21267 5.25613 5.29683 5.37973 5.39549 5.41820 5.42812 5.48613 5.52075 5.61635 5.65318 5.79831 5.83141 5.91638 5.93010 6.01602 6.32731 7.10205 7.11645 7.57742 7.59598 7.83038 8.14528 8.59850 8.94949 9.42413 9.82900 10.81908 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020152 B = 0.001455 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.134426 B =19241.011976 C =20190.419613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.285 3.715 3 F -0.200 7.200 4 F -0.202 7.202 5 C -0.143 4.143 6 C -0.148 4.148 7 C 0.520 3.480 8 O -0.541 6.541 9 N -0.710 5.710 10 C 0.119 3.881 11 C -0.150 4.150 12 C -0.106 4.106 13 C 0.068 3.932 14 N -0.668 5.668 15 C 0.047 3.953 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.306 4.306 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.139 4.139 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.404 0.596 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.350 0.650 43 H 0.043 0.957 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.095 0.905 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.256 -17.118 -16.445 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.249 3.751 3 F -0.181 7.181 4 F -0.183 7.183 5 C -0.182 4.182 6 C -0.188 4.188 7 C 0.307 3.693 8 O -0.418 6.418 9 N -0.361 5.361 10 C 0.014 3.986 11 C -0.189 4.189 12 C -0.125 4.125 13 C -0.061 4.061 14 N -0.301 5.301 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.178 4.178 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.239 0.761 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.170 0.830 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.113 0.887 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.633 -16.577 -16.669 33.335 hybrid contribution 0.970 -1.008 1.167 1.821 sum -22.663 -17.585 -15.502 32.606 Atomic orbital electron populations 1.22763 0.91344 1.05598 1.05532 1.21184 0.94042 0.75787 0.84110 1.93029 1.90537 1.37685 1.96864 1.93014 1.90572 1.80946 1.53767 1.22381 0.95551 1.03584 0.96664 1.21651 0.96297 1.03249 0.97621 1.20473 0.82263 0.79360 0.87201 1.90715 1.55228 1.48579 1.47276 1.45689 1.07003 1.58491 1.24963 1.21830 0.95627 0.95151 0.86014 1.23572 0.96186 1.00733 0.98420 1.22680 0.93551 0.97335 0.98890 1.21956 0.96449 0.90743 0.96971 1.60081 1.10883 1.12083 1.47017 1.21708 0.95217 0.96721 0.94895 1.19730 0.83352 0.90093 0.83287 1.90563 1.57646 1.42326 1.54114 1.42208 1.30009 1.08265 1.42566 1.19440 1.13979 0.83987 1.26036 0.86295 1.25037 0.97029 0.96736 0.97334 1.69622 1.26955 1.19848 1.35716 0.86665 0.80376 0.82350 0.79942 1.19596 1.20189 1.19559 1.23331 0.94368 0.97794 1.02263 0.89047 0.89941 0.89137 0.87949 0.87842 0.87741 0.87944 0.76134 0.88156 0.90814 0.89264 0.88133 0.95368 0.91013 0.83037 0.93866 0.89530 0.79698 0.91619 0.88683 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.77 9.38 37.16 0.35 -0.42 16 2 C 0.28 1.78 2.11 -26.73 -0.06 1.73 16 3 F -0.20 -1.65 16.54 2.25 0.04 -1.61 16 4 F -0.20 -1.56 16.54 2.25 0.04 -1.52 16 5 C -0.14 -0.87 4.09 -26.73 -0.11 -0.98 16 6 C -0.15 -0.92 5.46 -27.89 -0.15 -1.07 16 7 C 0.52 4.54 7.83 -10.99 -0.09 4.46 16 8 O -0.54 -6.64 15.60 5.55 0.09 -6.55 16 9 N -0.71 -5.23 5.26 -53.02 -0.28 -5.51 16 10 C 0.12 0.97 4.30 -67.12 -0.29 0.68 16 11 C -0.15 -1.36 7.45 -25.78 -0.19 -1.55 16 12 C -0.11 -0.94 3.79 -89.67 -0.34 -1.28 16 13 C 0.07 0.74 5.52 -3.82 -0.02 0.71 16 14 N -0.67 -10.07 6.13 -115.05 -0.70 -10.78 16 15 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 16 C 0.45 10.24 7.82 -10.99 -0.09 10.15 16 17 O -0.56 -15.24 15.78 5.55 0.09 -15.15 16 18 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 19 C -0.31 -8.69 10.16 -14.93 -0.15 -8.85 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 23 Si 0.88 19.36 27.74 -169.99 -4.71 14.64 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 27 C -0.14 -0.95 7.38 -25.92 -0.19 -1.14 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 33 H 0.10 0.60 7.80 -51.93 -0.41 0.19 16 34 H 0.10 0.51 7.80 -51.93 -0.41 0.11 16 35 H 0.40 2.16 8.70 -40.82 -0.36 1.80 16 36 H 0.10 0.93 7.50 -51.93 -0.39 0.55 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.28 7.85 -51.93 -0.41 -0.12 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -35.30 405.36 -7.64 -42.93 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.56 Total: 12.42 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.45 Total: 4.23 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.27 Total: -55.50 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.17 Total: -21.70 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.07 Total: -3.13 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.30 -7.64 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700375848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.130 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds