Wall clock time and date at job start Wed Apr 1 2020 04:40:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 F 1.39900 * 109.47192 * 2 1
4 4 F 1.39902 * 109.46948 * 240.00075 * 2 1 3
5 5 C 1.53006 * 109.47299 * 120.00104 * 2 1 3
6 6 C 1.52998 * 109.47299 * 180.02562 * 5 2 1
7 7 C 1.50696 * 109.46959 * 180.02562 * 6 5 2
8 8 O 1.21286 * 120.00282 * 0.02562 * 7 6 5
9 9 N 1.34774 * 119.99763 * 179.97438 * 7 6 5
10 10 C 1.46506 * 119.99952 * 179.97438 * 9 7 6
11 11 C 1.53773 * 113.61686 * 254.13880 * 10 9 7
12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9
13 13 C 1.53002 * 113.62545 * 220.02302 * 12 11 10
14 14 N 1.46903 * 109.46642 * 272.49637 * 13 12 11
15 15 C 1.46903 * 110.99743 * 179.97438 * 14 13 12
16 16 C 1.50697 * 109.47213 * 179.97438 * 15 14 13
17 17 O 1.21292 * 119.99953 * 359.97438 * 16 15 14
18 18 N 1.34780 * 119.99650 * 180.02562 * 16 15 14
19 19 C 1.37096 * 119.99346 * 179.97438 * 18 16 15
20 20 H 1.08001 * 120.00675 * 359.97438 * 19 18 16
21 21 C 1.38955 * 119.99979 * 179.97438 * 19 18 16
22 22 N 1.31405 * 120.00197 * 179.97438 * 21 19 18
23 23 Si 1.86801 * 119.99634 * 359.97438 * 21 19 18
24 24 H 1.48500 * 109.47387 * 89.99915 * 23 21 19
25 25 H 1.48499 * 109.47141 * 209.99733 * 23 21 19
26 26 H 1.48500 * 109.47298 * 329.99840 * 23 21 19
27 27 C 1.53781 * 113.61361 * 156.53041 * 10 9 7
28 28 H 1.08999 * 109.47371 * 299.99933 * 1 2 3
29 29 H 1.09002 * 109.47178 * 59.99934 * 1 2 3
30 30 H 1.08998 * 109.47323 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.46817 * 59.99832 * 5 2 1
32 32 H 1.08999 * 109.46879 * 300.00264 * 5 2 1
33 33 H 1.09001 * 109.47078 * 59.99688 * 6 5 2
34 34 H 1.09002 * 109.46665 * 300.00166 * 6 5 2
35 35 H 0.96997 * 120.00341 * 359.97438 * 9 7 6
36 36 H 1.09002 * 112.84852 * 25.33640 * 10 9 7
37 37 H 1.09007 * 113.61678 * 25.42910 * 11 10 9
38 38 H 1.09000 * 113.61916 * 156.33583 * 11 10 9
39 39 H 1.09005 * 113.68989 * 89.12112 * 12 11 10
40 40 H 1.09005 * 109.46483 * 32.48989 * 13 12 11
41 41 H 1.08995 * 109.47301 * 152.49438 * 13 12 11
42 42 H 1.00896 * 111.00440 * 56.04050 * 14 13 12
43 43 H 1.08998 * 109.46937 * 299.99866 * 15 14 13
44 44 H 1.09003 * 109.47232 * 59.99322 * 15 14 13
45 45 H 0.96997 * 120.00384 * 359.97438 * 18 16 15
46 46 H 0.97004 * 119.99818 * 180.02562 * 22 21 19
47 47 H 1.09001 * 113.61158 * 203.66864 * 27 10 9
48 48 H 1.08998 * 113.61196 * 334.56885 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 9 1.9963 1.3190 0.0000
4 9 1.9963 -0.6595 -1.1423
5 6 2.0400 -0.7213 1.2493
6 6 3.5700 -0.7207 1.2496
7 6 4.0723 -1.4317 2.4797
8 8 3.2842 -1.8938 3.2774
9 7 5.3974 -1.5549 2.6929
10 6 5.8857 -2.2456 3.8891
11 6 6.4542 -1.2982 4.9586
12 6 7.8147 -1.4480 4.2517
13 6 8.9977 -1.5584 5.2157
14 7 9.4810 -0.2130 5.5537
15 6 10.6191 -0.2798 6.4802
16 6 11.0869 1.1159 6.8028
17 8 10.5276 2.0722 6.3091
18 7 12.1274 1.3014 7.6392
19 6 12.5532 2.5711 7.9322
20 1 12.0553 3.4228 7.4926
21 6 13.6256 2.7625 8.7949
22 7 14.0341 3.9796 9.0754
23 14 14.4864 1.2897 9.5559
24 1 15.5966 0.8536 8.6713
25 1 15.0315 1.6670 10.8847
26 1 13.5156 0.1775 9.7167
27 6 7.3096 -2.8067 3.7383
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 1.6767 -1.7489 1.2492
32 1 1.6767 -0.2075 2.1392
33 1 3.9330 0.3071 1.2498
34 1 3.9337 -1.2343 0.3595
35 1 6.0277 -1.1863 2.0544
36 1 5.1708 -2.9687 4.2818
37 1 6.0444 -0.2892 4.9105
38 1 6.4371 -1.7156 5.9653
39 1 7.9802 -0.7165 3.4606
40 1 8.6793 -2.0691 6.1245
41 1 9.8001 -2.1246 4.7428
42 1 8.7378 0.3532 5.9346
43 1 10.3115 -0.7815 7.3977
44 1 11.4329 -0.8374 6.0166
45 1 12.5748 0.5366 8.0338
46 1 14.7830 4.1131 9.6774
47 1 7.5257 -3.6358 4.4120
48 1 7.5897 -3.0149 2.7057
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700375848.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:15
Heat of formation + Delta-G solvation = -190.154471 kcal
Electronic energy + Delta-G solvation = -29282.826576 eV
Core-core repulsion = 24621.504549 eV
Total energy + Delta-G solvation = -4661.322026 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.181 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-49.96319 -47.94850 -41.32441 -40.31001 -39.55135 -36.57594 -35.82521 -35.13915
-34.19025 -33.73858 -31.57735 -29.85912 -27.45246 -26.64018 -26.21270 -24.95650
-23.00412 -22.54936 -21.56565 -21.30952 -20.41190 -19.99888 -18.62766 -18.53853
-17.85152 -17.30172 -17.19194 -16.91715 -16.80313 -16.64376 -16.64145 -15.96832
-15.69650 -15.21941 -15.05356 -15.00718 -14.86785 -14.57686 -14.35564 -14.23834
-14.23110 -14.10791 -13.97669 -13.65072 -13.37093 -13.33278 -13.16574 -13.11338
-12.87649 -12.84037 -12.55810 -12.41647 -12.25864 -11.98517 -11.85420 -11.80769
-11.51794 -11.43349 -11.06828 -10.96273 -10.43436 -10.25263 -10.04819 -9.29694
-8.41686 -6.02872 1.30244 1.36000 1.44864 1.55254 1.95488 2.07784
2.23084 2.74298 2.84180 3.14646 3.20759 3.36925 3.40032 3.47684
3.56253 3.76393 3.79494 3.90996 3.98481 4.10746 4.15460 4.17947
4.42693 4.48801 4.50790 4.54233 4.62006 4.63528 4.70278 4.80023
4.82833 4.89473 4.91976 4.94095 4.95215 5.03093 5.08657 5.20207
5.31291 5.52467 5.66146 5.91136 6.09411 6.41146 6.49966 6.59659
6.87668 7.19122 7.39437 7.96338 8.76033
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.020152 B = 0.001455 C = 0.001386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1389.134426 B =19241.011976 C =20190.419613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.281 3.719
3 F -0.213 7.213
4 F -0.211 7.211
5 C -0.141 4.141
6 C -0.144 4.144
7 C 0.518 3.482
8 O -0.580 6.580
9 N -0.703 5.703
10 C 0.117 3.883
11 C -0.153 4.153
12 C -0.103 4.103
13 C 0.070 3.930
14 N -0.688 5.688
15 C 0.062 3.938
16 C 0.447 3.553
17 O -0.616 6.616
18 N -0.591 5.591
19 C -0.332 4.332
20 H 0.054 0.946
21 C -0.015 4.015
22 N -0.935 5.935
23 Si 0.967 3.033
24 H -0.256 1.256
25 H -0.275 1.275
26 H -0.231 1.231
27 C -0.119 4.119
28 H 0.100 0.900
29 H 0.084 0.916
30 H 0.103 0.897
31 H 0.106 0.894
32 H 0.099 0.901
33 H 0.109 0.891
34 H 0.117 0.883
35 H 0.415 0.585
36 H 0.089 0.911
37 H 0.053 0.947
38 H 0.092 0.908
39 H 0.091 0.909
40 H 0.043 0.957
41 H 0.084 0.916
42 H 0.341 0.659
43 H 0.075 0.925
44 H 0.115 0.885
45 H 0.390 0.610
46 H 0.279 0.721
47 H 0.110 0.890
48 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.782 -21.034 -16.495 35.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.251 4.251
2 C 0.245 3.755
3 F -0.195 7.195
4 F -0.192 7.192
5 C -0.179 4.179
6 C -0.184 4.184
7 C 0.306 3.694
8 O -0.460 6.460
9 N -0.355 5.355
10 C 0.012 3.988
11 C -0.192 4.192
12 C -0.122 4.122
13 C -0.058 4.058
14 N -0.320 5.320
15 C -0.071 4.071
16 C 0.235 3.765
17 O -0.500 6.500
18 N -0.232 5.232
19 C -0.461 4.461
20 H 0.072 0.928
21 C -0.213 4.213
22 N -0.575 5.575
23 Si 0.786 3.214
24 H -0.181 1.181
25 H -0.200 1.200
26 H -0.154 1.154
27 C -0.157 4.157
28 H 0.118 0.882
29 H 0.103 0.897
30 H 0.122 0.878
31 H 0.124 0.876
32 H 0.118 0.882
33 H 0.127 0.873
34 H 0.136 0.864
35 H 0.252 0.748
36 H 0.107 0.893
37 H 0.072 0.928
38 H 0.111 0.889
39 H 0.109 0.891
40 H 0.061 0.939
41 H 0.103 0.897
42 H 0.159 0.841
43 H 0.093 0.907
44 H 0.133 0.867
45 H 0.226 0.774
46 H 0.089 0.911
47 H 0.128 0.872
48 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -23.151 -20.520 -16.752 35.180
hybrid contribution 0.751 0.327 1.118 1.386
sum -22.400 -20.193 -15.634 33.969
Atomic orbital electron populations
1.22800 0.89440 1.06722 1.06124 1.21448 0.95395 0.74985 0.83672
1.93001 1.90851 1.38721 1.96897 1.92993 1.90833 1.81071 1.54292
1.22357 0.95436 1.03708 0.96428 1.21666 0.96494 1.03308 0.96922
1.20877 0.82309 0.78815 0.87386 1.90695 1.56196 1.50384 1.48725
1.45676 1.06942 1.57926 1.24906 1.21809 0.96256 0.94793 0.85967
1.23589 0.96647 0.99867 0.99067 1.22609 0.92642 0.98595 0.98341
1.22070 0.97288 0.88525 0.97937 1.60110 1.10559 1.14615 1.46687
1.21641 0.96559 0.91913 0.96971 1.21068 0.81801 0.92470 0.81199
1.90541 1.58938 1.45052 1.55509 1.42032 1.30782 1.07066 1.43359
1.19019 1.15075 0.84532 1.27449 0.92814 1.26133 0.97160 1.00959
0.97078 1.69807 1.27825 1.23271 1.36603 0.85344 0.79516 0.78074
0.78439 1.18074 1.20036 1.15413 1.23253 0.92294 0.96807 1.03359
0.88153 0.89687 0.87786 0.87601 0.88229 0.87254 0.86443 0.74850
0.89271 0.92824 0.88923 0.89099 0.93897 0.89736 0.84096 0.90746
0.86687 0.77421 0.91131 0.87215 0.89340
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.32 9.38 71.98 0.68 -0.65 16
2 C 0.28 3.34 2.11 30.60 0.06 3.40 16
3 F -0.21 -3.45 16.54 44.97 0.74 -2.71 16
4 F -0.21 -3.09 16.54 44.97 0.74 -2.34 16
5 C -0.14 -1.64 4.09 30.60 0.13 -1.51 16
6 C -0.14 -1.69 5.46 29.85 0.16 -1.53 16
7 C 0.52 8.82 7.83 87.66 0.69 9.51 16
8 O -0.58 -14.28 15.60 -3.05 -0.05 -14.33 16
9 N -0.70 -9.68 5.26 -440.04 -2.32 -11.99 16
10 C 0.12 1.75 4.30 45.51 0.20 1.94 16
11 C -0.15 -2.63 7.45 31.21 0.23 -2.39 16
12 C -0.10 -1.62 3.79 -10.18 -0.04 -1.66 16
13 C 0.07 1.29 5.52 86.30 0.48 1.76 16
14 N -0.69 -19.44 6.13 -517.92 -3.17 -22.61 16
15 C 0.06 1.83 6.17 85.56 0.53 2.36 16
16 C 0.45 20.19 7.82 87.66 0.69 20.88 16
17 O -0.62 -34.46 15.78 -3.07 -0.05 -34.51 16
18 N -0.59 -27.88 5.09 -306.98 -1.56 -29.44 16
19 C -0.33 -19.56 10.16 84.04 0.85 -18.70 16
20 H 0.05 3.79 7.39 -2.91 -0.02 3.76 16
21 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16
22 N -0.93 -56.53 13.96 21.66 0.30 -56.22 16
23 Si 0.97 38.58 27.74 68.60 1.90 40.48 16
24 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16
25 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16
26 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16
27 C -0.12 -1.27 7.38 31.12 0.23 -1.04 16
28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16
29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16
30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16
31 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16
32 H 0.10 1.24 8.10 -2.39 -0.02 1.22 16
33 H 0.11 1.19 7.80 -2.39 -0.02 1.17 16
34 H 0.12 1.03 7.80 -2.39 -0.02 1.01 16
35 H 0.41 3.86 8.70 -92.71 -0.81 3.05 16
36 H 0.09 1.58 7.50 -2.39 -0.02 1.56 16
37 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16
38 H 0.09 1.52 7.90 -2.39 -0.02 1.50 16
39 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16
40 H 0.04 0.69 7.85 -2.38 -0.02 0.67 16
41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
42 H 0.34 10.67 8.43 -89.70 -0.76 9.92 16
43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
44 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16
45 H 0.39 15.10 5.76 -92.71 -0.53 14.57 16
46 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16
47 H 0.11 0.92 8.10 -2.39 -0.02 0.90 16
48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
Total: -1.00 -82.68 405.36 0.74 -81.94
By element:
Atomic # 1 Polarization: 40.88 SS G_CDS: -1.15 Total: 39.73 kcal
Atomic # 6 Polarization: 6.67 SS G_CDS: 5.34 Total: 12.01 kcal
Atomic # 7 Polarization: -113.51 SS G_CDS: -6.75 Total: -120.26 kcal
Atomic # 8 Polarization: -48.75 SS G_CDS: -0.10 Total: -48.85 kcal
Atomic # 9 Polarization: -6.54 SS G_CDS: 1.49 Total: -5.05 kcal
Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.48 kcal
Total: -82.68 0.74 -81.94 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700375848.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.212 kcal
(2) G-P(sol) polarization free energy of solvation -82.679 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) -190.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds