Wall clock time and date at job start Wed Apr 1 2020 04:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39900 * 109.47192 * 2 1 4 4 F 1.39902 * 109.46948 * 240.00075 * 2 1 3 5 5 C 1.53006 * 109.47299 * 120.00104 * 2 1 3 6 6 C 1.52998 * 109.47299 * 180.02562 * 5 2 1 7 7 C 1.50696 * 109.46959 * 180.02562 * 6 5 2 8 8 O 1.21286 * 120.00282 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99763 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99952 * 179.97438 * 9 7 6 11 11 C 1.53773 * 113.61686 * 254.13880 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.53002 * 113.62545 * 220.02302 * 12 11 10 14 14 N 1.46903 * 109.46642 * 272.49637 * 13 12 11 15 15 C 1.46903 * 110.99743 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47213 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99953 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99650 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99346 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00675 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99979 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00197 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99634 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47387 * 89.99915 * 23 21 19 25 25 H 1.48499 * 109.47141 * 209.99733 * 23 21 19 26 26 H 1.48500 * 109.47298 * 329.99840 * 23 21 19 27 27 C 1.53781 * 113.61361 * 156.53041 * 10 9 7 28 28 H 1.08999 * 109.47371 * 299.99933 * 1 2 3 29 29 H 1.09002 * 109.47178 * 59.99934 * 1 2 3 30 30 H 1.08998 * 109.47323 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46817 * 59.99832 * 5 2 1 32 32 H 1.08999 * 109.46879 * 300.00264 * 5 2 1 33 33 H 1.09001 * 109.47078 * 59.99688 * 6 5 2 34 34 H 1.09002 * 109.46665 * 300.00166 * 6 5 2 35 35 H 0.96997 * 120.00341 * 359.97438 * 9 7 6 36 36 H 1.09002 * 112.84852 * 25.33640 * 10 9 7 37 37 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 38 38 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 39 39 H 1.09005 * 113.68989 * 89.12112 * 12 11 10 40 40 H 1.09005 * 109.46483 * 32.48989 * 13 12 11 41 41 H 1.08995 * 109.47301 * 152.49438 * 13 12 11 42 42 H 1.00896 * 111.00440 * 56.04050 * 14 13 12 43 43 H 1.08998 * 109.46937 * 299.99866 * 15 14 13 44 44 H 1.09003 * 109.47232 * 59.99322 * 15 14 13 45 45 H 0.96997 * 120.00384 * 359.97438 * 18 16 15 46 46 H 0.97004 * 119.99818 * 180.02562 * 22 21 19 47 47 H 1.09001 * 113.61158 * 203.66864 * 27 10 9 48 48 H 1.08998 * 113.61196 * 334.56885 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2493 6 6 3.5700 -0.7207 1.2496 7 6 4.0723 -1.4317 2.4797 8 8 3.2842 -1.8938 3.2774 9 7 5.3974 -1.5549 2.6929 10 6 5.8857 -2.2456 3.8891 11 6 6.4542 -1.2982 4.9586 12 6 7.8147 -1.4480 4.2517 13 6 8.9977 -1.5584 5.2157 14 7 9.4810 -0.2130 5.5537 15 6 10.6191 -0.2798 6.4802 16 6 11.0869 1.1159 6.8028 17 8 10.5276 2.0722 6.3091 18 7 12.1274 1.3014 7.6392 19 6 12.5532 2.5711 7.9322 20 1 12.0553 3.4228 7.4926 21 6 13.6256 2.7625 8.7949 22 7 14.0341 3.9796 9.0754 23 14 14.4864 1.2897 9.5559 24 1 15.5966 0.8536 8.6713 25 1 15.0315 1.6670 10.8847 26 1 13.5156 0.1775 9.7167 27 6 7.3096 -2.8067 3.7383 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6767 -1.7489 1.2492 32 1 1.6767 -0.2075 2.1392 33 1 3.9330 0.3071 1.2498 34 1 3.9337 -1.2343 0.3595 35 1 6.0277 -1.1863 2.0544 36 1 5.1708 -2.9687 4.2818 37 1 6.0444 -0.2892 4.9105 38 1 6.4371 -1.7156 5.9653 39 1 7.9802 -0.7165 3.4606 40 1 8.6793 -2.0691 6.1245 41 1 9.8001 -2.1246 4.7428 42 1 8.7378 0.3532 5.9346 43 1 10.3115 -0.7815 7.3977 44 1 11.4329 -0.8374 6.0166 45 1 12.5748 0.5366 8.0338 46 1 14.7830 4.1131 9.6774 47 1 7.5257 -3.6358 4.4120 48 1 7.5897 -3.0149 2.7057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700375848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:15 Heat of formation + Delta-G solvation = -190.154471 kcal Electronic energy + Delta-G solvation = -29282.826576 eV Core-core repulsion = 24621.504549 eV Total energy + Delta-G solvation = -4661.322026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.96319 -47.94850 -41.32441 -40.31001 -39.55135 -36.57594 -35.82521 -35.13915 -34.19025 -33.73858 -31.57735 -29.85912 -27.45246 -26.64018 -26.21270 -24.95650 -23.00412 -22.54936 -21.56565 -21.30952 -20.41190 -19.99888 -18.62766 -18.53853 -17.85152 -17.30172 -17.19194 -16.91715 -16.80313 -16.64376 -16.64145 -15.96832 -15.69650 -15.21941 -15.05356 -15.00718 -14.86785 -14.57686 -14.35564 -14.23834 -14.23110 -14.10791 -13.97669 -13.65072 -13.37093 -13.33278 -13.16574 -13.11338 -12.87649 -12.84037 -12.55810 -12.41647 -12.25864 -11.98517 -11.85420 -11.80769 -11.51794 -11.43349 -11.06828 -10.96273 -10.43436 -10.25263 -10.04819 -9.29694 -8.41686 -6.02872 1.30244 1.36000 1.44864 1.55254 1.95488 2.07784 2.23084 2.74298 2.84180 3.14646 3.20759 3.36925 3.40032 3.47684 3.56253 3.76393 3.79494 3.90996 3.98481 4.10746 4.15460 4.17947 4.42693 4.48801 4.50790 4.54233 4.62006 4.63528 4.70278 4.80023 4.82833 4.89473 4.91976 4.94095 4.95215 5.03093 5.08657 5.20207 5.31291 5.52467 5.66146 5.91136 6.09411 6.41146 6.49966 6.59659 6.87668 7.19122 7.39437 7.96338 8.76033 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020152 B = 0.001455 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.134426 B =19241.011976 C =20190.419613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.281 3.719 3 F -0.213 7.213 4 F -0.211 7.211 5 C -0.141 4.141 6 C -0.144 4.144 7 C 0.518 3.482 8 O -0.580 6.580 9 N -0.703 5.703 10 C 0.117 3.883 11 C -0.153 4.153 12 C -0.103 4.103 13 C 0.070 3.930 14 N -0.688 5.688 15 C 0.062 3.938 16 C 0.447 3.553 17 O -0.616 6.616 18 N -0.591 5.591 19 C -0.332 4.332 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.231 1.231 27 C -0.119 4.119 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.415 0.585 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.341 0.659 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.110 0.890 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.782 -21.034 -16.495 35.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.245 3.755 3 F -0.195 7.195 4 F -0.192 7.192 5 C -0.179 4.179 6 C -0.184 4.184 7 C 0.306 3.694 8 O -0.460 6.460 9 N -0.355 5.355 10 C 0.012 3.988 11 C -0.192 4.192 12 C -0.122 4.122 13 C -0.058 4.058 14 N -0.320 5.320 15 C -0.071 4.071 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.232 5.232 19 C -0.461 4.461 20 H 0.072 0.928 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.154 1.154 27 C -0.157 4.157 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.252 0.748 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.159 0.841 43 H 0.093 0.907 44 H 0.133 0.867 45 H 0.226 0.774 46 H 0.089 0.911 47 H 0.128 0.872 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.151 -20.520 -16.752 35.180 hybrid contribution 0.751 0.327 1.118 1.386 sum -22.400 -20.193 -15.634 33.969 Atomic orbital electron populations 1.22800 0.89440 1.06722 1.06124 1.21448 0.95395 0.74985 0.83672 1.93001 1.90851 1.38721 1.96897 1.92993 1.90833 1.81071 1.54292 1.22357 0.95436 1.03708 0.96428 1.21666 0.96494 1.03308 0.96922 1.20877 0.82309 0.78815 0.87386 1.90695 1.56196 1.50384 1.48725 1.45676 1.06942 1.57926 1.24906 1.21809 0.96256 0.94793 0.85967 1.23589 0.96647 0.99867 0.99067 1.22609 0.92642 0.98595 0.98341 1.22070 0.97288 0.88525 0.97937 1.60110 1.10559 1.14615 1.46687 1.21641 0.96559 0.91913 0.96971 1.21068 0.81801 0.92470 0.81199 1.90541 1.58938 1.45052 1.55509 1.42032 1.30782 1.07066 1.43359 1.19019 1.15075 0.84532 1.27449 0.92814 1.26133 0.97160 1.00959 0.97078 1.69807 1.27825 1.23271 1.36603 0.85344 0.79516 0.78074 0.78439 1.18074 1.20036 1.15413 1.23253 0.92294 0.96807 1.03359 0.88153 0.89687 0.87786 0.87601 0.88229 0.87254 0.86443 0.74850 0.89271 0.92824 0.88923 0.89099 0.93897 0.89736 0.84096 0.90746 0.86687 0.77421 0.91131 0.87215 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 9.38 71.98 0.68 -0.65 16 2 C 0.28 3.34 2.11 30.60 0.06 3.40 16 3 F -0.21 -3.45 16.54 44.97 0.74 -2.71 16 4 F -0.21 -3.09 16.54 44.97 0.74 -2.34 16 5 C -0.14 -1.64 4.09 30.60 0.13 -1.51 16 6 C -0.14 -1.69 5.46 29.85 0.16 -1.53 16 7 C 0.52 8.82 7.83 87.66 0.69 9.51 16 8 O -0.58 -14.28 15.60 -3.05 -0.05 -14.33 16 9 N -0.70 -9.68 5.26 -440.04 -2.32 -11.99 16 10 C 0.12 1.75 4.30 45.51 0.20 1.94 16 11 C -0.15 -2.63 7.45 31.21 0.23 -2.39 16 12 C -0.10 -1.62 3.79 -10.18 -0.04 -1.66 16 13 C 0.07 1.29 5.52 86.30 0.48 1.76 16 14 N -0.69 -19.44 6.13 -517.92 -3.17 -22.61 16 15 C 0.06 1.83 6.17 85.56 0.53 2.36 16 16 C 0.45 20.19 7.82 87.66 0.69 20.88 16 17 O -0.62 -34.46 15.78 -3.07 -0.05 -34.51 16 18 N -0.59 -27.88 5.09 -306.98 -1.56 -29.44 16 19 C -0.33 -19.56 10.16 84.04 0.85 -18.70 16 20 H 0.05 3.79 7.39 -2.91 -0.02 3.76 16 21 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.93 -56.53 13.96 21.66 0.30 -56.22 16 23 Si 0.97 38.58 27.74 68.60 1.90 40.48 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 25 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 27 C -0.12 -1.27 7.38 31.12 0.23 -1.04 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.10 1.24 8.10 -2.39 -0.02 1.22 16 33 H 0.11 1.19 7.80 -2.39 -0.02 1.17 16 34 H 0.12 1.03 7.80 -2.39 -0.02 1.01 16 35 H 0.41 3.86 8.70 -92.71 -0.81 3.05 16 36 H 0.09 1.58 7.50 -2.39 -0.02 1.56 16 37 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.09 1.52 7.90 -2.39 -0.02 1.50 16 39 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.04 0.69 7.85 -2.38 -0.02 0.67 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.34 10.67 8.43 -89.70 -0.76 9.92 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.39 15.10 5.76 -92.71 -0.53 14.57 16 46 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.11 0.92 8.10 -2.39 -0.02 0.90 16 48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -82.68 405.36 0.74 -81.94 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: -1.15 Total: 39.73 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.34 Total: 12.01 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -6.75 Total: -120.26 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -0.10 Total: -48.85 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 1.49 Total: -5.05 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.48 kcal Total: -82.68 0.74 -81.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700375848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.212 kcal (2) G-P(sol) polarization free energy of solvation -82.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds