Wall clock time and date at job start Wed Apr 1 2020 04:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.52999 * 109.47086 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47107 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47316 * 55.00134 * 5 4 3 7 7 C 1.53002 * 109.47142 * 175.00300 * 5 4 3 8 8 N 1.46506 * 109.46743 * 175.00138 * 7 5 4 9 9 C 1.36940 * 119.99290 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00373 * 359.97438 * 9 8 7 11 11 C 1.38818 * 119.99441 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99700 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00146 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47060 * 89.99743 * 13 11 9 15 15 H 1.48497 * 109.47109 * 210.00350 * 13 11 9 16 16 H 1.48507 * 109.46967 * 330.00005 * 13 11 9 17 17 N 1.46502 * 109.46854 * 295.00477 * 5 4 3 18 18 C 1.34767 * 120.00471 * 85.00300 * 17 5 4 19 19 O 1.21648 * 119.99761 * 359.97438 * 18 17 5 20 20 C 1.47205 * 120.00382 * 179.97438 * 18 17 5 21 21 C 1.38840 * 120.90044 * 359.97438 * 20 18 17 22 22 C 1.39938 * 119.43025 * 180.02562 * 21 20 18 23 23 C 1.35008 * 121.27226 * 359.97438 * 22 21 20 24 24 N 1.36265 * 121.57903 * 359.97438 * 23 22 21 25 25 C 1.36369 * 133.87785 * 179.97438 * 24 23 22 26 26 O 1.35711 * 126.33259 * 0.04037 * 25 24 23 27 27 N 1.31104 * 107.33038 * 180.02562 * 25 24 23 28 28 N 1.28689 * 110.31181 * 359.97438 * 27 25 24 29 29 C 1.31476 * 109.67217 * 0.02562 * 28 27 25 30 30 H 1.09002 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47616 * 300.00415 * 1 2 3 32 32 H 1.09007 * 109.46792 * 60.00193 * 1 2 3 33 33 H 1.08995 * 109.47616 * 239.99585 * 2 1 3 34 34 H 1.09007 * 109.46792 * 119.99807 * 2 1 3 35 35 H 1.09009 * 109.47141 * 59.99858 * 3 2 1 36 36 H 1.08994 * 109.47558 * 300.00003 * 3 2 1 37 37 H 1.09004 * 109.47126 * 60.00514 * 4 3 2 38 38 H 1.08993 * 109.47563 * 300.00142 * 4 3 2 39 39 H 1.08999 * 109.46726 * 294.99682 * 7 5 4 40 40 H 1.09002 * 109.46942 * 55.00228 * 7 5 4 41 41 H 0.96990 * 120.00374 * 359.97438 * 8 7 5 42 42 H 0.97002 * 120.00135 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99650 * 264.99294 * 17 5 4 44 44 H 1.08003 * 120.28510 * 359.97438 * 21 20 18 45 45 H 1.07999 * 119.36438 * 179.97438 * 22 21 20 46 46 H 1.07994 * 119.21330 * 180.27489 * 23 22 21 47 47 H 0.96702 * 113.99927 * 90.00566 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6451 3.4237 0.8431 7 6 5.6048 2.8867 0.1276 8 7 6.1031 4.2592 0.0084 9 6 7.4470 4.5092 0.0902 10 1 8.1395 3.6946 0.2429 11 6 7.9192 5.8097 -0.0232 12 7 9.2109 6.0499 0.0548 13 14 6.7214 7.2185 -0.2880 14 1 6.2889 7.7544 1.0276 15 1 7.3866 8.2941 -1.0663 16 1 5.5364 6.7267 -1.0360 17 7 3.6929 3.5403 -1.2505 18 6 2.4758 4.1073 -1.3659 19 8 1.6984 4.0745 -0.4308 20 6 2.0870 4.7662 -2.6235 21 6 2.9596 4.8151 -3.7023 22 6 2.5584 5.4499 -4.8831 23 6 1.3379 6.0162 -4.9945 24 7 0.4446 5.9946 -3.9657 25 6 -0.8218 6.4735 -3.8033 26 8 -1.5509 7.1485 -4.7277 27 7 -1.2048 6.1609 -2.5890 28 7 -0.2715 5.5202 -1.9772 29 6 0.7678 5.3869 -2.7714 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9337 0.9285 -0.8892 38 1 3.9330 0.9287 0.8908 39 1 5.8895 2.4798 1.0979 40 1 6.0357 2.2737 -0.6641 41 1 5.4812 4.9907 -0.1290 42 1 9.5408 6.9587 -0.0241 43 1 4.3127 3.5662 -1.9962 44 1 3.9400 4.3676 -3.6305 45 1 3.2382 5.4877 -5.7214 46 1 1.0610 6.4936 -5.9228 47 1 -2.0896 6.5802 -5.2952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700520960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:57 Heat of formation + Delta-G solvation = 51.228224 kcal Electronic energy + Delta-G solvation = -31022.855000 eV Core-core repulsion = 26822.689299 eV Total energy + Delta-G solvation = -4200.165701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.79778 -40.07220 -38.40835 -38.04032 -36.66471 -35.04105 -34.17993 -33.53101 -31.71265 -31.27334 -30.60427 -29.16581 -27.56186 -25.38253 -24.19961 -23.75010 -23.23507 -22.02237 -21.46504 -20.74062 -20.47395 -19.55274 -18.45356 -17.88374 -17.66965 -17.26882 -16.68092 -16.20587 -15.77455 -15.35063 -15.13544 -14.84683 -14.55766 -14.35905 -14.06910 -13.46344 -13.34978 -13.09933 -13.05842 -12.92133 -12.81854 -12.76483 -12.58245 -12.20688 -12.08177 -12.01744 -11.45695 -11.39010 -11.30624 -11.00250 -10.89722 -10.88050 -10.70040 -10.37057 -10.33057 -10.16165 -9.93393 -9.82798 -9.67149 -9.00459 -8.84666 -8.45323 -7.33159 -5.84485 -3.20876 -0.16617 0.63741 1.47169 2.20238 2.46779 3.06461 3.26294 3.29641 3.36165 3.38039 3.41840 3.64846 3.90881 4.21323 4.34876 4.51903 4.53256 4.74537 4.99701 5.05326 5.06803 5.15262 5.29473 5.33221 5.37075 5.40412 5.45313 5.46518 5.47508 5.69133 5.71274 5.77062 5.87308 5.90654 5.99580 6.08488 6.11720 6.12318 6.23705 6.31553 6.43517 6.52121 6.62814 6.77159 6.82281 7.57939 7.90981 8.20692 8.27840 8.34333 9.12902 9.85096 10.04224 11.33617 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007695 B = 0.004237 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3637.890701 B = 6606.384356 C = 9365.033172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.126 4.126 5 C 0.136 3.864 6 H 0.092 0.908 7 C 0.149 3.851 8 N -0.756 5.756 9 C -0.247 4.247 10 H 0.092 0.908 11 C 0.009 3.991 12 N -0.932 5.932 13 Si 0.881 3.119 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.279 1.279 17 N -0.707 5.707 18 C 0.558 3.442 19 O -0.499 6.499 20 C -0.082 4.082 21 C -0.042 4.042 22 C -0.140 4.140 23 C 0.086 3.914 24 N -0.407 5.407 25 C 0.311 3.689 26 O -0.427 6.427 27 N -0.240 5.240 28 N -0.237 5.237 29 C 0.234 3.766 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.401 0.599 44 H 0.159 0.841 45 H 0.166 0.834 46 H 0.173 0.827 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.642 -7.299 -14.851 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.032 3.968 6 H 0.110 0.890 7 C 0.021 3.979 8 N -0.402 5.402 9 C -0.377 4.377 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.579 5.579 13 Si 0.712 3.288 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.205 1.205 17 N -0.360 5.360 18 C 0.342 3.658 19 O -0.374 6.374 20 C -0.089 4.089 21 C -0.067 4.067 22 C -0.162 4.162 23 C -0.036 4.036 24 N -0.100 5.100 25 C 0.012 3.988 26 O -0.226 6.226 27 N -0.090 5.090 28 N -0.083 5.083 29 C -0.018 4.018 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.237 0.763 44 H 0.177 0.823 45 H 0.183 0.817 46 H 0.190 0.810 47 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -18.865 -6.825 -12.701 23.745 hybrid contribution 0.168 1.126 -2.238 2.511 sum -18.697 -5.699 -14.939 24.602 Atomic orbital electron populations 1.21740 0.96221 1.00780 1.01984 1.21555 0.95661 0.97609 1.01326 1.21685 0.94576 0.95518 1.03364 1.21975 0.96202 0.95795 1.02509 1.21446 0.96156 0.92918 0.86327 0.89031 1.20962 0.88824 0.88280 0.99797 1.42713 1.05388 1.02613 1.89463 1.19042 0.82002 0.94240 1.42383 0.89066 1.24646 0.95436 0.96860 1.01803 1.69694 1.11407 1.20000 1.56811 0.86622 0.80619 0.83349 0.78260 1.20977 1.21718 1.20512 1.45881 1.15335 1.57180 1.17617 1.17375 0.82701 0.79276 0.86428 1.90911 1.50571 1.57235 1.38680 1.20278 0.89537 1.02419 0.96674 1.21963 0.99271 0.94446 0.91007 1.20851 0.95389 0.99961 0.99953 1.21745 0.89770 1.00201 0.91891 1.44080 1.13760 1.38704 1.13478 1.21789 0.82268 1.02679 0.92092 1.85029 1.58668 1.31994 1.46897 1.74728 1.21577 1.11356 1.01290 1.75035 0.96435 1.14870 1.21917 1.22594 0.97238 0.99025 0.82920 0.93359 0.92670 0.93060 0.92681 0.92353 0.91305 0.91878 0.91764 0.90769 0.93766 0.94855 0.80424 0.92983 0.76324 0.82349 0.81689 0.80984 0.73952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C -0.11 -1.47 3.81 -26.73 -0.10 -1.57 16 4 C -0.13 -1.53 4.89 -26.73 -0.13 -1.66 16 5 C 0.14 1.99 2.42 -67.93 -0.16 1.83 16 6 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 7 C 0.15 2.56 5.82 -4.04 -0.02 2.54 16 8 N -0.76 -16.68 5.24 -59.90 -0.31 -16.99 16 9 C -0.25 -6.63 10.47 -15.06 -0.16 -6.79 16 10 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 11 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 12 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 13 Si 0.88 21.75 27.74 -169.99 -4.71 17.03 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 17 N -0.71 -9.75 4.42 -54.94 -0.24 -9.99 16 18 C 0.56 8.52 6.34 -12.62 -0.08 8.44 16 19 O -0.50 -9.20 13.41 5.24 0.07 -9.13 16 20 C -0.08 -1.08 6.06 -102.69 -0.62 -1.71 16 21 C -0.04 -0.39 9.63 -38.72 -0.37 -0.76 16 22 C -0.14 -0.90 9.91 -40.09 -0.40 -1.30 16 23 C 0.09 0.62 10.94 -16.73 -0.18 0.43 16 24 N -0.41 -4.63 2.97 -62.52 -0.19 -4.81 16 25 C 0.31 3.76 9.41 -88.65 -0.83 2.92 16 26 O -0.43 -3.47 13.65 -18.84 -0.26 -3.73 16 27 N -0.24 -3.79 12.20 29.70 0.36 -3.43 16 28 N -0.24 -4.15 11.75 32.37 0.38 -3.77 16 29 C 0.23 3.47 7.75 -153.91 -1.19 2.27 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.01 7.84 -51.92 -0.41 0.61 16 36 H 0.06 0.91 5.65 -51.93 -0.29 0.61 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.36 8.08 5.20 -40.82 -0.21 7.86 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.40 4.80 6.70 -40.82 -0.27 4.53 16 44 H 0.16 1.12 6.48 -52.48 -0.34 0.78 16 45 H 0.17 0.46 8.06 -52.49 -0.42 0.03 16 46 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 47 H 0.40 0.92 9.06 45.56 0.41 1.34 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -37.67 389.14 -8.16 -45.82 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.75 Total: 8.74 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -4.15 Total: 2.04 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 0.78 Total: -66.65 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.19 Total: -12.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.67 -8.16 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700520960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.051 kcal (2) G-P(sol) polarization free energy of solvation -37.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds