Wall clock time and date at job start Wed Apr 1 2020 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.52999 * 109.47086 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47107 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47316 * 55.00134 * 5 4 3 7 7 C 1.53002 * 109.47142 * 175.00300 * 5 4 3 8 8 N 1.46506 * 109.46743 * 175.00138 * 7 5 4 9 9 C 1.36940 * 119.99290 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00373 * 359.97438 * 9 8 7 11 11 C 1.38818 * 119.99441 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99700 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00146 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47060 * 89.99743 * 13 11 9 15 15 H 1.48497 * 109.47109 * 210.00350 * 13 11 9 16 16 H 1.48507 * 109.46967 * 330.00005 * 13 11 9 17 17 N 1.46502 * 109.46854 * 295.00477 * 5 4 3 18 18 C 1.34767 * 120.00471 * 85.00300 * 17 5 4 19 19 O 1.21648 * 119.99761 * 359.97438 * 18 17 5 20 20 C 1.47205 * 120.00382 * 179.97438 * 18 17 5 21 21 C 1.38840 * 120.90044 * 359.97438 * 20 18 17 22 22 C 1.39938 * 119.43025 * 180.02562 * 21 20 18 23 23 C 1.35008 * 121.27226 * 359.97438 * 22 21 20 24 24 N 1.36265 * 121.57903 * 359.97438 * 23 22 21 25 25 C 1.36369 * 133.87785 * 179.97438 * 24 23 22 26 26 O 1.35711 * 126.33259 * 0.04037 * 25 24 23 27 27 N 1.31104 * 107.33038 * 180.02562 * 25 24 23 28 28 N 1.28689 * 110.31181 * 359.97438 * 27 25 24 29 29 C 1.31476 * 109.67217 * 0.02562 * 28 27 25 30 30 H 1.09002 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47616 * 300.00415 * 1 2 3 32 32 H 1.09007 * 109.46792 * 60.00193 * 1 2 3 33 33 H 1.08995 * 109.47616 * 239.99585 * 2 1 3 34 34 H 1.09007 * 109.46792 * 119.99807 * 2 1 3 35 35 H 1.09009 * 109.47141 * 59.99858 * 3 2 1 36 36 H 1.08994 * 109.47558 * 300.00003 * 3 2 1 37 37 H 1.09004 * 109.47126 * 60.00514 * 4 3 2 38 38 H 1.08993 * 109.47563 * 300.00142 * 4 3 2 39 39 H 1.08999 * 109.46726 * 294.99682 * 7 5 4 40 40 H 1.09002 * 109.46942 * 55.00228 * 7 5 4 41 41 H 0.96990 * 120.00374 * 359.97438 * 8 7 5 42 42 H 0.97002 * 120.00135 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99650 * 264.99294 * 17 5 4 44 44 H 1.08003 * 120.28510 * 359.97438 * 21 20 18 45 45 H 1.07999 * 119.36438 * 179.97438 * 22 21 20 46 46 H 1.07994 * 119.21330 * 180.27489 * 23 22 21 47 47 H 0.96702 * 113.99927 * 90.00566 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6451 3.4237 0.8431 7 6 5.6048 2.8867 0.1276 8 7 6.1031 4.2592 0.0084 9 6 7.4470 4.5092 0.0902 10 1 8.1395 3.6946 0.2429 11 6 7.9192 5.8097 -0.0232 12 7 9.2109 6.0499 0.0548 13 14 6.7214 7.2185 -0.2880 14 1 6.2889 7.7544 1.0276 15 1 7.3866 8.2941 -1.0663 16 1 5.5364 6.7267 -1.0360 17 7 3.6929 3.5403 -1.2505 18 6 2.4758 4.1073 -1.3659 19 8 1.6984 4.0745 -0.4308 20 6 2.0870 4.7662 -2.6235 21 6 2.9596 4.8151 -3.7023 22 6 2.5584 5.4499 -4.8831 23 6 1.3379 6.0162 -4.9945 24 7 0.4446 5.9946 -3.9657 25 6 -0.8218 6.4735 -3.8033 26 8 -1.5509 7.1485 -4.7277 27 7 -1.2048 6.1609 -2.5890 28 7 -0.2715 5.5202 -1.9772 29 6 0.7678 5.3869 -2.7714 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.9337 0.9285 -0.8892 38 1 3.9330 0.9287 0.8908 39 1 5.8895 2.4798 1.0979 40 1 6.0357 2.2737 -0.6641 41 1 5.4812 4.9907 -0.1290 42 1 9.5408 6.9587 -0.0241 43 1 4.3127 3.5662 -1.9962 44 1 3.9400 4.3676 -3.6305 45 1 3.2382 5.4877 -5.7214 46 1 1.0610 6.4936 -5.9228 47 1 -2.0896 6.5802 -5.2952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700520960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:56 Heat of formation + Delta-G solvation = 21.174949 kcal Electronic energy + Delta-G solvation = -31024.158208 eV Core-core repulsion = 26822.689299 eV Total energy + Delta-G solvation = -4201.468909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.67991 -41.17311 -39.19693 -38.76735 -37.92743 -36.33068 -35.32090 -34.75111 -33.26234 -32.34659 -31.76792 -30.05447 -28.93370 -26.28311 -25.62175 -24.60521 -24.14211 -23.52766 -22.50260 -21.77976 -21.62682 -20.41301 -19.71543 -19.27073 -18.50199 -18.26905 -17.67896 -17.22799 -16.70603 -16.41478 -16.28200 -15.93876 -15.82125 -15.66501 -15.26194 -14.80730 -14.53118 -14.35176 -14.06997 -13.94018 -13.75373 -13.74474 -13.65713 -13.31367 -13.26143 -12.95587 -12.93953 -12.92423 -12.58551 -12.17951 -12.11293 -11.93667 -11.85159 -11.81461 -11.60207 -11.42930 -11.34288 -11.05210 -10.91982 -10.77365 -10.01501 -9.29365 -9.27916 -8.01727 -5.34162 -0.90946 -0.12922 0.67027 1.32717 1.37328 1.40600 1.43793 1.56048 2.04865 2.41100 2.46437 2.51106 2.94090 3.14307 3.31336 3.45538 3.55659 3.69276 3.75763 3.90540 4.09439 4.14547 4.26811 4.33621 4.34576 4.40062 4.52932 4.61570 4.65569 4.70282 4.81400 4.86573 4.94653 4.95923 5.00428 5.08881 5.11011 5.14868 5.22771 5.33292 5.41158 5.52927 5.57955 5.63692 5.79309 6.22186 6.27782 6.52763 7.08626 7.21986 7.27151 7.84500 8.02137 9.19672 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007695 B = 0.004237 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3637.890701 B = 6606.384356 C = 9365.033172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.116 4.116 5 C 0.146 3.854 6 H 0.064 0.936 7 C 0.149 3.851 8 N -0.757 5.757 9 C -0.225 4.225 10 H 0.067 0.933 11 C -0.053 4.053 12 N -0.980 5.980 13 Si 0.940 3.060 14 H -0.297 1.297 15 H -0.292 1.292 16 H -0.251 1.251 17 N -0.701 5.701 18 C 0.557 3.443 19 O -0.545 6.545 20 C -0.137 4.137 21 C -0.006 4.006 22 C -0.139 4.139 23 C 0.095 3.905 24 N -0.408 5.408 25 C 0.329 3.671 26 O -0.421 6.421 27 N -0.288 5.288 28 N -0.301 5.301 29 C 0.225 3.775 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.363 0.637 42 H 0.257 0.743 43 H 0.411 0.589 44 H 0.182 0.818 45 H 0.216 0.784 46 H 0.221 0.779 47 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.885 -7.813 -18.642 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.144 4.144 4 C -0.155 4.155 5 C 0.041 3.959 6 H 0.082 0.918 7 C 0.023 3.977 8 N -0.403 5.403 9 C -0.356 4.356 10 H 0.085 0.915 11 C -0.245 4.245 12 N -0.631 5.631 13 Si 0.769 3.231 14 H -0.224 1.224 15 H -0.218 1.218 16 H -0.175 1.175 17 N -0.354 5.354 18 C 0.344 3.656 19 O -0.423 6.423 20 C -0.144 4.144 21 C -0.031 4.031 22 C -0.159 4.159 23 C -0.025 4.025 24 N -0.100 5.100 25 C 0.027 3.973 26 O -0.224 6.224 27 N -0.137 5.137 28 N -0.146 5.146 29 C -0.029 4.029 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.196 0.804 42 H 0.066 0.934 43 H 0.249 0.751 44 H 0.199 0.801 45 H 0.233 0.767 46 H 0.237 0.763 47 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -19.162 -7.391 -16.534 26.366 hybrid contribution 0.262 1.244 -1.216 1.759 sum -18.900 -6.148 -17.750 26.647 Atomic orbital electron populations 1.21737 0.96395 1.01647 1.00920 1.21530 0.95517 0.96166 1.02478 1.21547 0.95101 0.96476 1.01232 1.21909 0.95440 0.94118 1.04028 1.21220 0.94106 0.94381 0.86182 0.91760 1.21119 0.90380 0.85881 1.00297 1.42724 1.03591 1.04743 1.89248 1.19049 0.83632 0.93337 1.39626 0.91543 1.25298 0.96775 0.99402 1.03055 1.69846 1.13502 1.20289 1.59449 0.85644 0.79483 0.80254 0.77706 1.22404 1.21849 1.17535 1.45754 1.15274 1.56989 1.17429 1.17730 0.82320 0.78634 0.86896 1.90886 1.51822 1.59061 1.40522 1.20080 0.90489 1.06413 0.97405 1.22462 0.98860 0.91441 0.90297 1.21460 0.95804 0.98552 1.00110 1.22785 0.89088 0.98677 0.91984 1.44216 1.14007 1.38284 1.13525 1.21732 0.82683 1.01009 0.91885 1.85005 1.58658 1.32299 1.46426 1.74541 1.22542 1.13190 1.03384 1.74885 0.98091 1.17484 1.24154 1.22779 0.97217 0.99141 0.83739 0.91437 0.93827 0.94124 0.91221 0.91325 0.94107 0.93559 0.89683 0.89650 0.93842 0.92832 0.80397 0.93387 0.75125 0.80086 0.76713 0.76279 0.70760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.49 16 2 C -0.12 -2.48 5.93 30.59 0.18 -2.30 16 3 C -0.11 -2.76 3.81 30.59 0.12 -2.64 16 4 C -0.12 -2.67 4.89 30.60 0.15 -2.52 16 5 C 0.15 4.19 2.42 44.99 0.11 4.30 16 6 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 7 C 0.15 4.92 5.82 86.38 0.50 5.42 16 8 N -0.76 -32.52 5.24 -343.43 -1.80 -34.32 16 9 C -0.23 -12.03 10.47 84.03 0.88 -11.15 16 10 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 11 C -0.05 -3.02 5.50 84.86 0.47 -2.55 16 12 N -0.98 -60.62 13.97 21.65 0.30 -60.32 16 13 Si 0.94 44.67 27.74 68.60 1.90 46.57 16 14 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 16 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 17 N -0.70 -18.60 4.42 -445.99 -1.97 -20.57 16 18 C 0.56 17.26 6.34 86.60 0.55 17.81 16 19 O -0.54 -21.39 13.41 -4.18 -0.06 -21.44 16 20 C -0.14 -3.50 6.06 -18.61 -0.11 -3.61 16 21 C -0.01 -0.09 9.63 22.83 0.22 0.13 16 22 C -0.14 -1.01 9.91 21.94 0.22 -0.80 16 23 C 0.10 0.90 10.94 83.26 0.91 1.82 16 24 N -0.41 -8.43 2.97 -462.37 -1.37 -9.80 16 25 C 0.33 7.59 9.41 179.66 1.69 9.28 16 26 O -0.42 -5.77 13.65 -90.32 -1.23 -7.01 16 27 N -0.29 -9.49 12.20 -173.36 -2.11 -11.60 16 28 N -0.30 -11.19 11.75 -51.51 -0.61 -11.80 16 29 C 0.22 6.69 7.75 135.68 1.05 7.74 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.04 1.28 7.84 -2.38 -0.02 1.26 16 36 H 0.05 1.37 5.65 -2.39 -0.01 1.36 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.36 15.62 5.20 -92.72 -0.48 15.14 16 42 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.41 8.83 6.70 -92.71 -0.62 8.21 16 44 H 0.18 1.71 6.48 -2.91 -0.02 1.69 16 45 H 0.22 -0.50 8.06 -2.91 -0.02 -0.53 16 46 H 0.22 -0.07 8.06 -2.91 -0.02 -0.09 16 47 H 0.43 0.65 9.06 -74.06 -0.67 -0.02 16 Total: -1.00 -89.23 389.14 -0.10 -89.33 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.80 Total: 22.51 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 7.65 Total: 18.45 kcal Atomic # 7 Polarization: -140.85 SS G_CDS: -7.56 Total: -148.41 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.29 Total: -28.45 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Total: -89.23 -0.10 -89.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700520960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.502 kcal (2) G-P(sol) polarization free energy of solvation -89.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds