Wall clock time and date at job start Wed Apr 1 2020 04:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31908 * 119.04053 * 2 1 4 4 C 1.32179 * 121.03431 * 179.97438 * 3 2 1 5 5 C 1.38807 * 119.14396 * 359.72227 * 4 3 2 6 6 C 1.39494 * 118.26298 * 0.51508 * 5 4 3 7 7 C 1.48453 * 120.54786 * 179.75491 * 6 5 4 8 8 O 1.21478 * 120.00175 * 359.72527 * 7 6 5 9 9 N 1.34774 * 120.00000 * 179.72648 * 7 6 5 10 10 C 1.46498 * 120.00131 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47462 * 173.29182 * 10 9 7 12 12 H 1.09007 * 110.42035 * 60.28117 * 11 10 9 13 13 C 1.54905 * 110.38000 * 182.59327 * 11 10 9 14 14 C 1.55134 * 101.65561 * 155.89710 * 13 11 10 15 15 C 1.54318 * 103.02249 * 324.34953 * 14 13 11 16 16 N 1.47442 * 107.22967 * 22.28066 * 15 14 13 17 17 C 1.46910 * 110.99795 * 123.25938 * 16 15 14 18 18 C 1.50698 * 109.46982 * 75.61986 * 17 16 15 19 19 O 1.21294 * 120.00127 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99891 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99958 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99946 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99838 * 179.71862 * 21 20 18 24 24 N 1.31410 * 119.99912 * 180.27581 * 23 21 20 25 25 Si 1.86798 * 120.00225 * 0.28480 * 23 21 20 26 26 H 1.48497 * 109.47135 * 89.99138 * 25 23 21 27 27 H 1.48493 * 109.47143 * 209.99763 * 25 23 21 28 28 H 1.48504 * 109.46660 * 329.99483 * 25 23 21 29 29 N 1.31557 * 119.04132 * 179.97438 * 2 1 3 30 30 H 1.09009 * 109.47100 * 270.02125 * 1 2 3 31 31 H 1.08999 * 109.47449 * 30.02058 * 1 2 3 32 32 H 1.09003 * 109.47033 * 150.02390 * 1 2 3 33 33 H 1.07998 * 120.42515 * 180.02562 * 4 3 2 34 34 H 1.07995 * 120.86494 * 180.29476 * 5 4 3 35 35 H 0.96997 * 119.99963 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47359 * 53.28645 * 10 9 7 37 37 H 1.09001 * 109.46912 * 293.29200 * 10 9 7 38 38 H 1.09005 * 110.98516 * 37.80065 * 13 11 10 39 39 H 1.09002 * 110.98624 * 273.99730 * 13 11 10 40 40 H 1.09002 * 110.70393 * 205.96419 * 14 13 11 41 41 H 1.09005 * 110.84947 * 82.80519 * 14 13 11 42 42 H 1.08998 * 109.88635 * 262.87707 * 15 14 13 43 43 H 1.08994 * 110.02336 * 141.76471 * 15 14 13 44 44 H 1.09004 * 109.46968 * 315.62056 * 17 16 15 45 45 H 1.08993 * 109.47078 * 195.62059 * 17 16 15 46 46 H 0.96996 * 120.00218 * 359.97438 * 20 18 17 47 47 H 0.97003 * 120.00215 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1532 0.0000 4 6 3.4683 1.1992 0.0005 5 6 4.1861 0.0112 0.0069 6 6 3.4760 -1.1896 0.0016 7 6 4.1924 -2.4898 0.0025 8 8 5.4070 -2.5141 0.0030 9 7 3.4954 -3.6432 0.0029 10 6 4.2023 -4.9264 0.0044 11 6 3.1936 -6.0643 0.1730 12 1 2.4755 -6.0606 -0.6471 13 6 3.9253 -7.4279 0.2428 14 6 2.8966 -8.2965 1.0134 15 6 2.2783 -7.2976 2.0141 16 7 2.4943 -5.9443 1.4701 17 6 1.2204 -5.2288 1.3172 18 6 0.7360 -4.7711 2.6687 19 8 1.3876 -5.0170 3.6618 20 7 -0.4218 -4.0892 2.7742 21 6 -0.8628 -3.6732 4.0039 22 1 -0.2822 -3.8915 4.8880 23 6 -2.0535 -2.9652 4.1119 24 7 -2.4734 -2.5617 5.2899 25 14 -3.0575 -2.5871 2.5827 26 1 -4.0231 -3.6887 2.3397 27 1 -3.7971 -1.3145 2.7783 28 1 -2.1499 -2.4577 1.4144 29 7 2.1456 -1.1502 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 3.9825 2.1490 0.0009 34 1 5.2660 0.0163 0.0123 35 1 2.5256 -3.6238 0.0029 36 1 4.9151 -4.9475 0.8288 37 1 4.7343 -5.0492 -0.9390 38 1 4.8587 -7.3420 0.7993 39 1 4.1033 -7.8269 -0.7558 40 1 3.3964 -9.1097 1.5397 41 1 2.1351 -8.6867 0.3380 42 1 2.7697 -7.3908 2.9825 43 1 1.2105 -7.4884 2.1204 44 1 0.4808 -5.8948 0.8725 45 1 1.3651 -4.3633 0.6708 46 1 -0.9431 -3.8929 1.9802 47 1 -3.3049 -2.0678 5.3655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714627456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:49 Heat of formation + Delta-G solvation = -0.285184 kcal Electronic energy + Delta-G solvation = -31374.568335 eV Core-core repulsion = 27172.168845 eV Total energy + Delta-G solvation = -4202.399490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37192 -39.94909 -39.00932 -37.76774 -34.86109 -33.99904 -33.90299 -33.34171 -32.13426 -31.56254 -30.15223 -28.59805 -27.00278 -26.30787 -24.69452 -23.88702 -22.96963 -21.53800 -20.62525 -20.39128 -19.32170 -18.39772 -18.22674 -17.68179 -16.55388 -15.98472 -15.81114 -15.70560 -15.55807 -15.30060 -14.94345 -14.83538 -14.78866 -14.19384 -13.84125 -13.75513 -13.51231 -13.47473 -12.92935 -12.69041 -12.62459 -12.45385 -12.37487 -12.33500 -12.10324 -11.60350 -11.42532 -11.33859 -11.13615 -11.11624 -11.07773 -10.96626 -10.65083 -10.59482 -10.45773 -9.97083 -9.65978 -9.54989 -9.46157 -9.11740 -8.60640 -8.16492 -8.03699 -6.29864 -3.80888 0.36790 0.76422 2.65011 2.88004 2.99744 3.05075 3.13520 3.63155 3.68454 3.74558 3.80444 3.87506 4.10063 4.35413 4.45561 4.60233 4.68600 4.77285 4.82820 4.93925 5.03217 5.12063 5.21017 5.24630 5.28608 5.39163 5.43631 5.52029 5.55950 5.59958 5.67741 5.70323 5.73854 5.84384 5.84878 5.85678 5.99505 6.09053 6.20138 6.31227 6.36412 6.67148 7.08720 7.09542 7.35030 7.59440 7.82845 8.02843 8.15679 8.61880 8.97114 9.43797 9.85917 10.83445 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006313 B = 0.005696 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4434.313240 B = 4914.250561 C = 8574.015876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.325 3.675 3 N -0.506 5.506 4 C 0.153 3.847 5 C -0.181 4.181 6 C 0.137 3.863 7 C 0.572 3.428 8 O -0.530 6.530 9 N -0.698 5.698 10 C 0.134 3.866 11 C 0.054 3.946 12 H 0.061 0.939 13 C -0.117 4.117 14 C -0.143 4.143 15 C 0.054 3.946 16 N -0.499 5.499 17 C 0.037 3.963 18 C 0.455 3.545 19 O -0.554 6.554 20 N -0.592 5.592 21 C -0.301 4.301 22 H 0.118 0.882 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.874 3.126 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.266 1.266 29 N -0.493 5.493 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.409 0.591 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.369 0.631 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.122 -1.220 -17.704 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 N -0.221 5.221 4 C -0.015 4.015 5 C -0.204 4.204 6 C -0.011 4.011 7 C 0.355 3.645 8 O -0.405 6.405 9 N -0.351 5.351 10 C 0.010 3.990 11 C -0.055 4.055 12 H 0.079 0.921 13 C -0.155 4.155 14 C -0.181 4.181 15 C -0.073 4.073 16 N -0.223 5.223 17 C -0.095 4.095 18 C 0.240 3.760 19 O -0.434 6.434 20 N -0.232 5.232 21 C -0.430 4.430 22 H 0.136 0.864 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.701 3.299 26 H -0.198 1.198 27 H -0.201 1.201 28 H -0.191 1.191 29 N -0.211 5.211 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.194 0.806 34 H 0.177 0.823 35 H 0.249 0.751 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.201 0.799 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.580 -1.078 -16.532 19.137 hybrid contribution -1.078 0.117 -1.503 1.854 sum 8.501 -0.961 -18.035 19.961 Atomic orbital electron populations 1.20689 0.85066 1.04237 1.04977 1.23264 0.98344 0.82791 0.89769 1.68229 1.10412 1.30415 1.13025 1.23354 0.89477 0.98599 0.90027 1.22915 1.03745 0.92999 1.00716 1.21622 0.89984 0.94746 0.94766 1.17754 0.86488 0.83036 0.77212 1.90774 1.12628 1.87002 1.50143 1.46014 1.11439 1.05231 1.72460 1.21495 0.94713 0.80542 1.02221 1.22868 0.95855 0.94889 0.91850 0.92124 1.22625 0.98994 0.93075 1.00817 1.22837 0.98355 0.98510 0.98408 1.22766 1.00256 0.85645 0.98645 1.63121 1.20015 1.17253 1.21952 1.22245 0.91173 0.98466 0.97606 1.19553 0.82774 0.83836 0.89869 1.90571 1.56218 1.58625 1.38017 1.42176 1.20680 1.51445 1.08887 1.19400 1.05811 1.32142 0.85611 0.86426 1.25019 0.97040 0.97241 0.96867 1.69621 1.22491 1.37772 1.22423 0.86745 0.81008 0.79194 0.82974 1.19765 1.20129 1.19108 1.68181 1.08598 1.31372 1.12919 0.88674 0.89370 0.89377 0.80623 0.82260 0.75102 0.89790 0.91053 0.89995 0.90595 0.90552 0.91629 0.89719 0.92584 0.92799 0.90135 0.79877 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 10.31 36.00 0.37 -0.74 16 2 C 0.33 4.60 7.64 -157.30 -1.20 3.40 16 3 N -0.51 -6.70 10.32 -10.73 -0.11 -6.81 16 4 C 0.15 1.66 11.31 -17.19 -0.19 1.46 16 5 C -0.18 -2.16 9.72 -38.90 -0.38 -2.54 16 6 C 0.14 1.99 6.79 -82.64 -0.56 1.43 16 7 C 0.57 8.71 7.83 -12.05 -0.09 8.61 16 8 O -0.53 -8.90 16.40 5.39 0.09 -8.81 16 9 N -0.70 -9.70 5.37 -61.06 -0.33 -10.03 16 10 C 0.13 1.63 5.39 -4.05 -0.02 1.61 16 11 C 0.05 0.61 2.66 -66.19 -0.18 0.44 16 12 H 0.06 0.61 7.81 -51.93 -0.41 0.21 16 13 C -0.12 -1.07 6.49 -24.60 -0.16 -1.23 16 14 C -0.14 -1.42 6.94 -24.91 -0.17 -1.59 16 15 C 0.05 0.77 5.99 -2.84 -0.02 0.76 16 16 N -0.50 -7.57 4.34 -224.81 -0.98 -8.55 16 17 C 0.04 0.61 4.92 -4.97 -0.02 0.58 16 18 C 0.45 10.21 7.60 -10.99 -0.08 10.12 16 19 O -0.55 -14.83 15.42 5.55 0.09 -14.74 16 20 N -0.59 -13.84 5.09 -10.96 -0.06 -13.89 16 21 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 25 Si 0.87 18.75 27.74 -169.99 -4.72 14.04 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.01 6.51 56.52 0.37 -4.64 16 29 N -0.49 -7.37 9.60 -7.33 -0.07 -7.44 16 30 H 0.09 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.16 1.62 7.74 -52.49 -0.41 1.21 16 35 H 0.41 5.67 4.78 -40.82 -0.20 5.47 16 36 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.06 0.85 7.36 -51.93 -0.38 0.46 16 44 H 0.05 0.76 7.78 -51.93 -0.40 0.36 16 45 H 0.08 1.20 4.97 -51.93 -0.26 0.94 16 46 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -35.26 389.48 -8.89 -44.15 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -6.49 Total: 16.31 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: -2.96 Total: 14.75 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -0.77 Total: -71.57 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.72 Total: 14.04 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.26 -8.89 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714627456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.867 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds