Wall clock time and date at job start Wed Apr 1 2020 04:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31908 * 119.04053 * 2 1 4 4 C 1.32179 * 121.03431 * 179.97438 * 3 2 1 5 5 C 1.38807 * 119.14396 * 359.72227 * 4 3 2 6 6 C 1.39494 * 118.26298 * 0.51508 * 5 4 3 7 7 C 1.48453 * 120.54786 * 179.75491 * 6 5 4 8 8 O 1.21478 * 120.00175 * 359.72527 * 7 6 5 9 9 N 1.34774 * 120.00000 * 179.72648 * 7 6 5 10 10 C 1.46498 * 120.00131 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47462 * 173.29182 * 10 9 7 12 12 H 1.09007 * 110.42035 * 60.28117 * 11 10 9 13 13 C 1.54905 * 110.38000 * 182.59327 * 11 10 9 14 14 C 1.55134 * 101.65561 * 155.89710 * 13 11 10 15 15 C 1.54318 * 103.02249 * 324.34953 * 14 13 11 16 16 N 1.47442 * 107.22967 * 22.28066 * 15 14 13 17 17 C 1.46910 * 110.99795 * 123.25938 * 16 15 14 18 18 C 1.50698 * 109.46982 * 75.61986 * 17 16 15 19 19 O 1.21294 * 120.00127 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99891 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99958 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99946 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99838 * 179.71862 * 21 20 18 24 24 N 1.31410 * 119.99912 * 180.27581 * 23 21 20 25 25 Si 1.86798 * 120.00225 * 0.28480 * 23 21 20 26 26 H 1.48497 * 109.47135 * 89.99138 * 25 23 21 27 27 H 1.48493 * 109.47143 * 209.99763 * 25 23 21 28 28 H 1.48504 * 109.46660 * 329.99483 * 25 23 21 29 29 N 1.31557 * 119.04132 * 179.97438 * 2 1 3 30 30 H 1.09009 * 109.47100 * 270.02125 * 1 2 3 31 31 H 1.08999 * 109.47449 * 30.02058 * 1 2 3 32 32 H 1.09003 * 109.47033 * 150.02390 * 1 2 3 33 33 H 1.07998 * 120.42515 * 180.02562 * 4 3 2 34 34 H 1.07995 * 120.86494 * 180.29476 * 5 4 3 35 35 H 0.96997 * 119.99963 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47359 * 53.28645 * 10 9 7 37 37 H 1.09001 * 109.46912 * 293.29200 * 10 9 7 38 38 H 1.09005 * 110.98516 * 37.80065 * 13 11 10 39 39 H 1.09002 * 110.98624 * 273.99730 * 13 11 10 40 40 H 1.09002 * 110.70393 * 205.96419 * 14 13 11 41 41 H 1.09005 * 110.84947 * 82.80519 * 14 13 11 42 42 H 1.08998 * 109.88635 * 262.87707 * 15 14 13 43 43 H 1.08994 * 110.02336 * 141.76471 * 15 14 13 44 44 H 1.09004 * 109.46968 * 315.62056 * 17 16 15 45 45 H 1.08993 * 109.47078 * 195.62059 * 17 16 15 46 46 H 0.96996 * 120.00218 * 359.97438 * 20 18 17 47 47 H 0.97003 * 120.00215 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1532 0.0000 4 6 3.4683 1.1992 0.0005 5 6 4.1861 0.0112 0.0069 6 6 3.4760 -1.1896 0.0016 7 6 4.1924 -2.4898 0.0025 8 8 5.4070 -2.5141 0.0030 9 7 3.4954 -3.6432 0.0029 10 6 4.2023 -4.9264 0.0044 11 6 3.1936 -6.0643 0.1730 12 1 2.4755 -6.0606 -0.6471 13 6 3.9253 -7.4279 0.2428 14 6 2.8966 -8.2965 1.0134 15 6 2.2783 -7.2976 2.0141 16 7 2.4943 -5.9443 1.4701 17 6 1.2204 -5.2288 1.3172 18 6 0.7360 -4.7711 2.6687 19 8 1.3876 -5.0170 3.6618 20 7 -0.4218 -4.0892 2.7742 21 6 -0.8628 -3.6732 4.0039 22 1 -0.2822 -3.8915 4.8880 23 6 -2.0535 -2.9652 4.1119 24 7 -2.4734 -2.5617 5.2899 25 14 -3.0575 -2.5871 2.5827 26 1 -4.0231 -3.6887 2.3397 27 1 -3.7971 -1.3145 2.7783 28 1 -2.1499 -2.4577 1.4144 29 7 2.1456 -1.1502 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 3.9825 2.1490 0.0009 34 1 5.2660 0.0163 0.0123 35 1 2.5256 -3.6238 0.0029 36 1 4.9151 -4.9475 0.8288 37 1 4.7343 -5.0492 -0.9390 38 1 4.8587 -7.3420 0.7993 39 1 4.1033 -7.8269 -0.7558 40 1 3.3964 -9.1097 1.5397 41 1 2.1351 -8.6867 0.3380 42 1 2.7697 -7.3908 2.9825 43 1 1.2105 -7.4884 2.1204 44 1 0.4808 -5.8948 0.8725 45 1 1.3651 -4.3633 0.6708 46 1 -0.9431 -3.8929 1.9802 47 1 -3.3049 -2.0678 5.3655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714627456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:49 Heat of formation + Delta-G solvation = -28.959890 kcal Electronic energy + Delta-G solvation = -31375.811763 eV Core-core repulsion = 27172.168845 eV Total energy + Delta-G solvation = -4203.642919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36010 -41.10768 -40.31342 -39.31920 -36.05080 -35.86618 -34.92890 -34.28847 -33.78641 -33.14447 -31.14117 -29.52452 -28.48120 -27.35767 -26.06189 -25.27660 -23.95173 -22.56277 -21.65612 -21.43083 -21.18459 -20.18204 -19.37372 -18.64334 -17.69621 -17.54292 -16.91846 -16.79585 -16.75831 -16.59220 -16.34686 -15.92313 -15.87810 -15.59102 -15.26993 -14.87238 -14.82068 -14.54297 -14.40916 -14.19152 -13.89475 -13.68947 -13.53801 -13.29198 -13.18707 -12.97016 -12.79716 -12.39403 -12.36871 -12.22251 -12.07589 -12.00574 -11.98187 -11.94366 -11.58309 -11.54140 -11.47545 -10.62737 -10.46998 -10.42688 -10.22332 -10.18591 -9.24244 -8.39200 -5.99992 -0.65434 -0.16210 1.30414 1.36440 1.46206 1.55170 1.83865 1.98129 2.25197 2.56563 2.64469 2.70282 2.98529 3.16074 3.16239 3.43613 3.68361 3.70871 3.72246 3.92956 3.98494 4.07327 4.20316 4.24305 4.32178 4.34593 4.35453 4.44658 4.57822 4.64032 4.65510 4.74415 4.79758 4.90431 4.96990 5.01318 5.10470 5.16709 5.26406 5.28991 5.39048 5.54174 5.70765 5.90486 5.99516 6.08786 6.25216 6.61704 6.82054 6.90671 6.94147 7.41501 7.99734 8.78596 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006313 B = 0.005696 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4434.313240 B = 4914.250561 C = 8574.015876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.307 3.693 3 N -0.517 5.517 4 C 0.161 3.839 5 C -0.177 4.177 6 C 0.110 3.890 7 C 0.566 3.434 8 O -0.554 6.554 9 N -0.695 5.695 10 C 0.133 3.867 11 C 0.058 3.942 12 H 0.088 0.912 13 C -0.108 4.108 14 C -0.129 4.129 15 C 0.051 3.949 16 N -0.529 5.529 17 C 0.052 3.948 18 C 0.452 3.548 19 O -0.606 6.606 20 N -0.589 5.589 21 C -0.324 4.324 22 H 0.050 0.950 23 C -0.015 4.015 24 N -0.937 5.937 25 Si 0.956 3.044 26 H -0.259 1.259 27 H -0.273 1.273 28 H -0.220 1.220 29 N -0.509 5.509 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.220 0.780 34 H 0.175 0.825 35 H 0.409 0.591 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.388 0.612 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.798 -1.190 -22.301 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 N -0.232 5.232 4 C -0.007 4.007 5 C -0.200 4.200 6 C -0.037 4.037 7 C 0.350 3.650 8 O -0.432 6.432 9 N -0.348 5.348 10 C 0.009 3.991 11 C -0.050 4.050 12 H 0.105 0.895 13 C -0.147 4.147 14 C -0.168 4.168 15 C -0.076 4.076 16 N -0.254 5.254 17 C -0.079 4.079 18 C 0.239 3.761 19 O -0.490 6.490 20 N -0.231 5.231 21 C -0.453 4.453 22 H 0.068 0.932 23 C -0.213 4.213 24 N -0.578 5.578 25 Si 0.775 3.225 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.142 1.142 29 N -0.227 5.227 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.237 0.763 34 H 0.193 0.807 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.224 0.776 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.267 -1.082 -21.157 23.122 hybrid contribution -0.851 0.120 0.093 0.865 sum 8.415 -0.963 -21.063 22.703 Atomic orbital electron populations 1.20770 0.84004 1.05826 1.04401 1.23680 0.99305 0.82947 0.90075 1.68309 1.11527 1.30056 1.13344 1.24082 0.88796 0.99894 0.87882 1.23193 1.04593 0.92627 0.99612 1.21730 0.90373 0.95234 0.96348 1.17978 0.86363 0.83725 0.76903 1.90747 1.13469 1.87417 1.51540 1.46083 1.11436 1.05583 1.71685 1.21631 0.94689 0.80198 1.02544 1.22983 0.95892 0.95594 0.90526 0.89453 1.22656 0.98084 0.91432 1.02501 1.22773 0.98849 0.97593 0.97559 1.22694 0.99384 0.86873 0.98679 1.62950 1.19720 1.17846 1.24870 1.22085 0.92627 0.99973 0.93250 1.20830 0.81556 0.81801 0.91923 1.90549 1.57572 1.60056 1.40812 1.41975 1.21446 1.51833 1.07866 1.18930 1.06377 1.34284 0.85734 0.93219 1.26112 0.97795 0.95846 1.01553 1.69815 1.23383 1.38575 1.25979 0.85496 0.79249 0.79120 0.78603 1.18384 1.19777 1.14249 1.68135 1.08821 1.31967 1.13797 0.90115 0.87412 0.88289 0.76338 0.80731 0.75108 0.92191 0.88520 0.90602 0.87097 0.89556 0.89566 0.93200 0.93930 0.89424 0.88169 0.77638 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 10.31 71.24 0.73 -1.30 16 2 C 0.31 8.24 7.64 138.79 1.06 9.30 16 3 N -0.52 -12.71 10.32 -187.87 -1.94 -14.65 16 4 C 0.16 3.10 11.31 84.78 0.96 4.06 16 5 C -0.18 -3.98 9.72 22.71 0.22 -3.76 16 6 C 0.11 3.11 6.79 41.98 0.29 3.39 16 7 C 0.57 16.95 7.83 86.97 0.68 17.63 16 8 O -0.55 -18.45 16.40 -3.65 -0.06 -18.51 16 9 N -0.70 -18.46 5.37 -465.39 -2.50 -20.96 16 10 C 0.13 2.99 5.39 86.38 0.47 3.46 16 11 C 0.06 1.15 2.66 45.38 0.12 1.27 16 12 H 0.09 1.34 7.81 -2.38 -0.02 1.32 16 13 C -0.11 -1.62 6.49 31.98 0.21 -1.42 16 14 C -0.13 -2.23 6.94 31.77 0.22 -2.01 16 15 C 0.05 1.45 5.99 86.65 0.52 1.97 16 16 N -0.53 -15.56 4.34 -865.17 -3.76 -19.32 16 17 C 0.05 1.63 4.92 85.55 0.42 2.05 16 18 C 0.45 20.71 7.60 87.66 0.67 21.38 16 19 O -0.61 -34.50 15.42 -3.07 -0.05 -34.55 16 20 N -0.59 -27.81 5.09 -306.98 -1.56 -29.37 16 21 C -0.32 -19.08 10.16 84.04 0.85 -18.22 16 22 H 0.05 3.53 7.39 -2.91 -0.02 3.51 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.94 -56.71 13.96 21.66 0.30 -56.40 16 25 Si 0.96 37.68 27.74 68.60 1.90 39.58 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 28 H -0.22 -6.97 6.51 99.48 0.65 -6.32 16 29 N -0.51 -14.65 9.60 -177.09 -1.70 -16.35 16 30 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.22 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.18 3.27 7.74 -2.91 -0.02 3.24 16 35 H 0.41 10.63 4.78 -92.71 -0.44 10.19 16 36 H 0.06 1.66 8.11 -2.38 -0.02 1.64 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.25 8.06 -2.38 -0.02 1.23 16 39 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.04 1.28 7.36 -2.39 -0.02 1.26 16 44 H 0.09 2.17 7.78 -2.38 -0.02 2.15 16 45 H 0.10 2.73 4.97 -2.39 -0.01 2.72 16 46 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 47 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -85.82 389.48 -1.49 -87.31 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -0.01 Total: 45.78 kcal Atomic # 6 Polarization: 29.55 SS G_CDS: 7.88 Total: 37.44 kcal Atomic # 7 Polarization: -145.90 SS G_CDS: -11.16 Total: -157.06 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.11 Total: -53.06 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 1.90 Total: 39.58 kcal Total: -85.82 -1.49 -87.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714627456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.354 kcal (2) G-P(sol) polarization free energy of solvation -85.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds