Wall clock time and date at job start Wed Apr 1 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 N 1.46891 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.46899 * 111.00023 * 59.16158 * 4 3 2 6 6 C 1.53000 * 109.47382 * 66.04755 * 5 4 3 7 7 N 1.46496 * 109.47329 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00167 * 179.97438 * 7 6 5 9 9 O 1.21648 * 120.00109 * 359.97438 * 8 7 6 10 10 C 1.47060 * 120.00241 * 180.02562 * 8 7 6 11 11 C 1.38000 * 125.92004 * 179.97438 * 10 8 7 12 12 C 1.39354 * 107.48479 * 180.02562 * 11 10 8 13 13 C 1.38080 * 107.51792 * 0.02562 * 12 11 10 14 14 C 1.43195 * 125.89691 * 179.97438 * 13 12 11 15 15 N 9.76077 * 98.42533 * 56.23232 * 4 1 2 16 16 N 1.36714 * 108.20760 * 0.26215 * 13 12 11 17 17 H 0.97000 * 125.68981 * 179.73240 * 16 13 12 18 18 C 1.46901 * 110.99906 * 295.20645 * 4 3 2 19 19 C 1.50697 * 109.47212 * 288.24040 * 18 4 3 20 20 O 1.21297 * 120.00141 * 354.30127 * 19 18 4 21 21 N 1.34776 * 119.99858 * 174.30037 * 19 18 4 22 22 C 1.37105 * 119.99775 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99997 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99593 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00626 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99620 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47063 * 60.00183 * 26 24 22 28 28 H 1.48502 * 109.47297 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47114 * 300.00260 * 26 24 22 30 30 H 1.08993 * 109.47303 * 60.00410 * 1 2 3 31 31 H 1.09008 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47437 * 299.99651 * 1 2 3 33 33 H 1.08998 * 109.46980 * 240.00108 * 2 1 3 34 34 H 1.08997 * 109.47440 * 120.00089 * 2 1 3 35 35 H 1.09001 * 109.47187 * 59.93056 * 3 2 1 36 36 H 1.09007 * 109.46853 * 299.93623 * 3 2 1 37 37 H 1.09001 * 109.47208 * 306.04724 * 5 4 3 38 38 H 1.09005 * 109.47302 * 186.04698 * 5 4 3 39 39 H 1.09001 * 109.46974 * 59.99826 * 6 5 4 40 40 H 1.09005 * 109.46856 * 300.00217 * 6 5 4 41 41 H 0.96999 * 119.99951 * 0.02562 * 7 6 5 42 42 H 1.07995 * 126.25906 * 0.02562 * 11 10 8 43 43 H 1.08006 * 126.24451 * 179.97438 * 12 11 10 44 44 H 1.09001 * 109.47041 * 48.24322 * 18 4 3 45 45 H 1.09010 * 109.47051 * 168.24128 * 18 4 3 46 46 H 0.96993 * 120.00123 * 359.97438 * 21 19 18 47 47 H 0.96996 * 120.00064 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0358 0.7394 -1.1766 6 6 3.6724 1.5194 -2.4417 7 7 4.1985 0.8185 -3.6156 8 6 3.9978 1.3243 -4.8485 9 8 3.3794 2.3628 -4.9867 10 6 4.5254 0.6204 -6.0270 11 6 4.3917 1.0259 -7.3393 12 6 5.0327 0.0801 -8.1371 13 6 5.5479 -0.8894 -7.2998 14 6 6.2837 -2.0477 -7.7091 15 7 6.8723 -2.9738 -8.0278 16 7 5.2287 -0.5560 -6.0129 17 1 5.4634 -1.0654 -5.2215 18 6 4.0348 0.8587 1.2418 19 6 3.7991 1.8122 2.3847 20 8 3.3420 2.9150 2.1701 21 7 4.0962 1.4394 3.6454 22 6 3.8813 2.3067 4.6853 23 1 3.4743 3.2887 4.4942 24 6 4.1871 1.9222 5.9850 25 7 4.6827 0.7276 6.2175 26 14 3.8949 3.1041 7.4018 27 1 2.4540 3.4581 7.4620 28 1 4.3002 2.4589 8.6764 29 1 4.6988 4.3353 7.1932 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6756 1.9567 0.8894 36 1 1.6775 1.9560 -0.8906 37 1 3.6016 -0.2590 -1.2280 38 1 5.1201 0.6604 -1.0974 39 1 4.1067 2.5178 -2.3902 40 1 2.5881 1.5985 -2.5208 41 1 4.6906 -0.0101 -3.5055 42 1 3.8833 1.9138 -7.6849 43 1 5.1114 0.1011 -9.2141 44 1 3.5260 -0.0838 1.4440 45 1 5.1044 0.6783 1.1337 46 1 4.4613 0.5574 3.8171 47 1 4.8965 0.4594 7.1248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714654187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:58 Heat of formation + Delta-G solvation = -16.229928 kcal Electronic energy + Delta-G solvation = -29002.053141 eV Core-core repulsion = 24798.962235 eV Total energy + Delta-G solvation = -4203.090906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48507 -40.69427 -40.16969 -38.70230 -37.47658 -36.08820 -35.78698 -33.76919 -33.21671 -32.38624 -31.50469 -30.22564 -28.50026 -26.89017 -25.81029 -24.50018 -23.65954 -22.26218 -21.69624 -21.43260 -20.81699 -20.39065 -19.75635 -18.53261 -17.66307 -17.37755 -17.15074 -16.68107 -16.45958 -16.34790 -15.90547 -15.72608 -15.51871 -15.34673 -15.14553 -14.89207 -14.68016 -14.53464 -14.34940 -14.25421 -14.13700 -13.85226 -13.71866 -13.47963 -13.26787 -13.16998 -13.04258 -12.72762 -12.63904 -12.47532 -12.41586 -12.35834 -12.15209 -12.07435 -11.52152 -11.40009 -11.30236 -10.28609 -10.26245 -10.16326 -9.96990 -9.38802 -9.10276 -8.44340 -5.92259 -0.12152 1.09524 1.11530 1.40252 1.42014 1.52282 1.83128 2.00404 2.11210 2.25739 2.30842 2.34471 2.87650 2.91366 3.22901 3.45687 3.71241 3.83889 3.96952 4.01180 4.12652 4.19164 4.26266 4.28412 4.36307 4.46075 4.46757 4.59341 4.69428 4.82226 4.84060 4.89565 4.98490 5.02207 5.13281 5.19062 5.20484 5.27440 5.41298 5.43155 5.44325 5.69511 5.89052 6.06558 6.09172 6.20433 6.30327 6.43757 6.64591 7.05077 7.16768 7.61339 8.18219 8.72731 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.001734 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.074818 B =16142.274330 C =16592.129210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 C 0.056 3.944 4 N -0.530 5.530 5 C 0.045 3.955 6 C 0.131 3.869 7 N -0.710 5.710 8 C 0.587 3.413 9 O -0.560 6.560 10 C -0.007 4.007 11 C -0.119 4.119 12 C -0.113 4.113 13 C 0.092 3.908 14 C 0.299 3.701 15 N -0.438 5.438 16 N -0.501 5.501 17 H 0.436 0.564 18 C 0.057 3.943 19 C 0.442 3.558 20 O -0.616 6.616 21 N -0.577 5.577 22 C -0.330 4.330 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.412 0.588 42 H 0.164 0.836 43 H 0.182 0.818 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.395 0.605 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 -8.737 -25.110 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.195 4.195 3 C -0.072 4.072 4 N -0.253 5.253 5 C -0.083 4.083 6 C 0.007 3.993 7 N -0.362 5.362 8 C 0.374 3.626 9 O -0.438 6.438 10 C -0.126 4.126 11 C -0.145 4.145 12 C -0.141 4.141 13 C -0.026 4.026 14 C -0.016 4.016 15 N -0.115 5.115 16 N -0.100 5.100 17 H 0.277 0.723 18 C -0.074 4.074 19 C 0.229 3.771 20 O -0.501 6.501 21 N -0.215 5.215 22 C -0.460 4.460 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.181 0.819 43 H 0.199 0.801 44 H 0.093 0.907 45 H 0.131 0.869 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.445 -8.365 -25.457 26.799 hybrid contribution -0.081 -0.780 1.880 2.037 sum 0.364 -9.145 -23.576 25.290 Atomic orbital electron populations 1.21648 0.94870 1.02182 1.01646 1.22133 0.97400 0.97692 1.02303 1.22226 0.86525 0.96206 1.02236 1.61518 1.08226 1.54744 1.00855 1.22323 1.01711 0.96104 0.88138 1.21150 0.99185 0.95967 0.83038 1.45605 1.57447 1.27971 1.05204 1.17275 0.79219 0.83922 0.82170 1.90886 1.42390 1.24489 1.86001 1.20338 1.06097 0.90501 0.95621 1.21497 1.02111 1.01300 0.89639 1.21580 0.99433 0.92302 1.00788 1.15485 1.07627 0.94320 0.85136 1.24576 0.91944 0.91165 0.93920 1.81685 1.11289 1.11098 1.07469 1.41753 1.41556 1.18940 1.07743 0.72297 1.21770 1.02446 0.94877 0.88304 1.20876 0.82724 0.89223 0.84288 1.90501 1.50225 1.24707 1.84678 1.41924 1.57560 1.16699 1.05275 1.19585 1.41616 0.98277 0.86534 0.90526 1.25964 0.96408 0.98421 1.00422 1.69655 1.43904 1.19661 1.22970 0.85047 0.78695 0.77933 0.77018 1.19852 1.19545 1.19867 0.91874 0.91514 0.94209 0.89652 0.92704 0.93376 0.90123 0.91278 0.88546 0.92149 0.91601 0.75114 0.81863 0.80071 0.90722 0.86919 0.77081 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.91 71.98 0.71 -2.30 16 2 C -0.16 -3.41 5.29 30.59 0.16 -3.25 16 3 C 0.06 1.60 4.80 86.31 0.41 2.01 16 4 N -0.53 -14.91 4.31 -900.79 -3.88 -18.79 16 5 C 0.04 0.77 4.81 86.30 0.41 1.19 16 6 C 0.13 2.40 5.60 86.38 0.48 2.88 16 7 N -0.71 -8.69 5.55 -466.72 -2.59 -11.28 16 8 C 0.59 9.88 7.80 86.56 0.68 10.55 16 9 O -0.56 -14.70 16.87 -4.18 -0.07 -14.77 16 10 C -0.01 -0.08 7.04 40.58 0.29 0.21 16 11 C -0.12 -1.24 10.60 22.48 0.24 -1.00 16 12 C -0.11 -0.78 10.80 22.50 0.24 -0.53 16 13 C 0.09 0.71 6.93 39.59 0.27 0.99 16 14 C 0.30 3.38 15.91 88.25 1.40 4.79 16 15 N -0.44 -7.45 18.58 19.09 0.35 -7.10 16 16 N -0.50 -2.94 6.02 -175.94 -1.06 -4.00 16 17 H 0.44 0.07 8.15 -92.71 -0.76 -0.68 16 18 C 0.06 1.77 5.34 85.56 0.46 2.23 16 19 C 0.44 20.27 7.36 87.66 0.65 20.92 16 20 O -0.62 -33.54 14.70 -3.08 -0.05 -33.58 16 21 N -0.58 -28.83 5.29 -306.98 -1.62 -30.46 16 22 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 26 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.41 6.26 -2.39 -0.01 1.39 16 34 H 0.05 1.32 6.29 -2.39 -0.02 1.30 16 35 H 0.05 1.83 6.54 -2.39 -0.02 1.81 16 36 H 0.08 2.14 6.51 -2.38 -0.02 2.12 16 37 H 0.07 0.88 5.98 -2.39 -0.01 0.86 16 38 H 0.10 1.37 7.86 -2.38 -0.02 1.35 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.37 6.57 -2.38 -0.02 1.35 16 41 H 0.41 1.86 7.57 -92.71 -0.70 1.16 16 42 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 44 H 0.08 2.04 5.97 -2.39 -0.01 2.02 16 45 H 0.11 2.96 7.81 -2.38 -0.02 2.94 16 46 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 47 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -77.63 400.18 -0.04 -77.67 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -1.13 Total: 25.51 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.69 Total: 20.74 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -8.52 Total: -120.37 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.12 Total: -48.36 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -77.63 -0.04 -77.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714654187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.444 kcal (2) G-P(sol) polarization free energy of solvation -77.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds