Wall clock time and date at job start Wed Apr 1 2020 05:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47506 * 2 1 4 4 N 1.46905 * 109.46743 * 120.00175 * 2 1 3 5 5 C 1.46899 * 111.00068 * 294.16323 * 4 2 1 6 6 C 1.52994 * 109.46938 * 164.44991 * 5 4 2 7 7 C 1.53000 * 109.47043 * 183.76520 * 6 5 4 8 8 N 1.46505 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.34769 * 119.99956 * 180.02562 * 8 7 6 10 10 O 1.21275 * 120.00371 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99814 * 180.02562 * 9 8 7 12 12 H 1.08999 * 115.55049 * 34.32352 * 11 9 8 13 13 C 1.53003 * 117.50090 * 179.97438 * 11 9 8 14 14 C 1.53002 * 60.00051 * 107.48427 * 13 11 9 15 15 F 1.39898 * 117.50533 * 252.50723 * 14 13 11 16 16 F 1.39905 * 117.49546 * 107.48620 * 14 13 11 17 17 C 1.46900 * 110.99425 * 170.21469 * 4 2 1 18 18 C 1.50700 * 109.47308 * 293.94882 * 17 4 2 19 19 O 1.21297 * 119.99961 * 0.02562 * 18 17 4 20 20 N 1.34772 * 120.00131 * 180.02562 * 18 17 4 21 21 C 1.37104 * 120.00067 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00164 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00028 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00074 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99699 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47363 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46716 * 120.00045 * 25 23 21 28 28 H 1.48497 * 109.46879 * 239.99439 * 25 23 21 29 29 H 1.08998 * 109.47227 * 66.84984 * 1 2 3 30 30 H 1.08995 * 109.47803 * 186.85083 * 1 2 3 31 31 H 1.09004 * 109.47176 * 306.85161 * 1 2 3 32 32 H 1.09003 * 109.47051 * 239.99845 * 2 1 3 33 33 H 1.09003 * 109.47092 * 59.99870 * 3 2 1 34 34 H 1.08995 * 109.47441 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47220 * 300.00308 * 3 2 1 36 36 H 1.08997 * 109.47294 * 284.45660 * 5 4 2 37 37 H 1.09006 * 109.46740 * 44.45474 * 5 4 2 38 38 H 1.09007 * 109.47290 * 303.76281 * 6 5 4 39 39 H 1.09000 * 109.47252 * 63.76828 * 6 5 4 40 40 H 1.08998 * 109.47446 * 300.00110 * 7 6 5 41 41 H 1.09000 * 109.47087 * 60.00554 * 7 6 5 42 42 H 0.97005 * 119.99876 * 359.97438 * 8 7 6 43 43 H 1.08997 * 117.49902 * 214.97834 * 13 11 9 44 44 H 1.09002 * 117.49809 * 0.02562 * 13 11 9 45 45 H 1.09001 * 109.47429 * 53.95358 * 17 4 2 46 46 H 1.09007 * 109.46900 * 173.95354 * 17 4 2 47 47 H 0.97002 * 120.00468 * 0.02562 * 20 18 17 48 48 H 0.97000 * 120.00009 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.6658 0.0493 2.4170 6 6 1.8349 -0.8602 3.6356 7 6 1.3774 -0.1184 4.8931 8 7 1.5398 -0.9890 6.0601 9 6 1.1981 -0.5442 7.2855 10 8 0.7566 0.5770 7.4223 11 6 1.3658 -1.4396 8.4860 12 1 2.2224 -2.1130 8.4542 13 6 0.9605 -0.8764 9.8496 14 6 0.0957 -1.9430 9.1747 15 9 -1.1324 -1.5368 8.6419 16 9 0.1220 -3.2330 9.7154 17 6 3.4693 -0.9173 1.1226 18 6 3.7695 -1.8817 0.0042 19 8 2.8648 -2.3367 -0.6635 20 7 5.0431 -2.2387 -0.2541 21 6 5.3163 -3.1157 -1.2720 22 1 4.5108 -3.5208 -1.8665 23 6 6.6294 -3.4841 -1.5379 24 7 7.6095 -2.9916 -0.8143 25 14 7.0015 -4.6796 -2.9243 26 1 5.7333 -5.0855 -3.5817 27 1 7.8874 -4.0235 -3.9192 28 1 7.6795 -5.8805 -2.3737 29 1 -0.3633 0.4040 -0.9449 30 1 -0.3634 -1.0202 0.1226 31 1 -0.3634 0.6164 0.8224 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3189 0.9161 2.5171 37 1 0.6294 0.3808 2.3521 38 1 1.2323 -1.7591 3.5046 39 1 2.8838 -1.1378 3.7390 40 1 1.9799 0.7804 5.0242 41 1 0.3284 0.1592 4.7897 42 1 1.8927 -1.8860 5.9506 43 1 1.5499 -1.1798 10.7148 44 1 0.5721 0.1417 9.8784 45 1 3.9742 0.0296 0.9312 46 1 3.8229 -1.3335 2.0660 47 1 5.7666 -1.8752 0.2800 48 1 8.5262 -3.2485 -1.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714824029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:36 Heat of formation + Delta-G solvation = -138.259393 kcal Electronic energy + Delta-G solvation = -30340.541807 eV Core-core repulsion = 25681.470120 eV Total energy + Delta-G solvation = -4659.071687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.16340 -47.83390 -40.24303 -39.18966 -37.31358 -36.32812 -35.45759 -33.89009 -32.70247 -31.31824 -30.66159 -27.60792 -26.86321 -25.78536 -24.37060 -23.50157 -23.04689 -21.77771 -20.69164 -19.91156 -18.84551 -18.65798 -17.79582 -17.74498 -16.77884 -16.48825 -16.36338 -15.82877 -15.77937 -15.48656 -15.00973 -14.68851 -14.48541 -14.39540 -14.31954 -14.08378 -13.98068 -13.93813 -13.62067 -13.44870 -12.98710 -12.83420 -12.77871 -12.22118 -12.16230 -11.92945 -11.81743 -11.69788 -11.54621 -11.49638 -11.33600 -11.12341 -10.89718 -10.76895 -10.54559 -10.36979 -10.30951 -10.27127 -10.23351 -9.47546 -9.43566 -8.40543 -7.98347 -7.83803 -6.43238 -3.83813 1.69286 2.44432 2.63006 2.90382 3.14781 3.25547 3.32580 3.63435 3.85803 3.89813 3.98551 4.05585 4.21570 4.35628 4.76943 4.86066 4.91558 4.96402 5.01544 5.13603 5.21398 5.23978 5.25491 5.34588 5.38008 5.52014 5.58014 5.64871 5.70088 5.81782 5.88394 5.93000 5.99484 6.02291 6.06682 6.15775 6.25631 6.28015 6.52008 6.62325 7.05319 7.34362 7.45151 7.54157 7.74888 8.05790 8.60736 9.17283 9.53692 10.05553 10.74647 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.002012 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.059742 B =13910.742831 C =15471.156591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 C -0.187 4.187 4 N -0.507 5.507 5 C 0.055 3.945 6 C -0.131 4.131 7 C 0.121 3.879 8 N -0.718 5.718 9 C 0.542 3.458 10 O -0.527 6.527 11 C -0.196 4.196 12 H 0.152 0.848 13 C -0.140 4.140 14 C 0.222 3.778 15 F -0.150 7.150 16 F -0.154 7.154 17 C 0.040 3.960 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.406 0.594 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.049 0.951 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 6.526 18.958 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.037 4.037 3 C -0.245 4.245 4 N -0.230 5.230 5 C -0.074 4.074 6 C -0.169 4.169 7 C -0.003 4.003 8 N -0.369 5.369 9 C 0.327 3.673 10 O -0.403 6.403 11 C -0.218 4.218 12 H 0.169 0.831 13 C -0.178 4.178 14 C 0.185 3.815 15 F -0.130 7.130 16 F -0.134 7.134 17 C -0.091 4.091 18 C 0.230 3.770 19 O -0.460 6.460 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.240 0.760 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.175 6.508 18.567 22.627 hybrid contribution 1.373 -0.254 -0.441 1.464 sum -9.803 6.254 18.126 21.535 Atomic orbital electron populations 1.21783 0.94882 1.02217 1.00546 1.21889 0.95334 0.91509 0.94992 1.22520 1.01558 0.98739 1.01727 1.61825 1.12574 1.47358 1.01269 1.22007 1.01359 0.94444 0.89569 1.21824 1.02629 0.99979 0.92456 1.21412 1.01969 0.93309 0.83610 1.45902 1.65648 1.18771 1.06554 1.19142 0.77965 0.86854 0.83367 1.90739 1.44385 1.19754 1.85465 1.23762 0.99768 1.03211 0.95038 0.83061 1.24309 0.98653 0.99958 0.94884 1.19650 0.80087 0.81108 1.00659 1.93092 1.44057 1.89539 1.86360 1.93075 1.96463 1.38140 1.85730 1.21929 0.88827 0.98598 0.99723 1.19758 0.83644 0.86260 0.87331 1.90493 1.44938 1.58182 1.52406 1.41888 1.05971 1.41121 1.31303 1.19738 0.93205 1.20291 1.09395 0.87885 1.25252 0.95218 0.98661 0.98872 1.69617 1.00046 1.44616 1.40139 0.85819 0.78608 0.79655 0.80392 1.19227 1.20799 1.20770 0.92750 0.91650 0.93576 0.87186 0.92936 0.92671 0.92307 0.94581 0.90245 0.89999 0.91034 0.91201 0.91097 0.75972 0.84866 0.84567 0.93279 0.89530 0.77578 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.99 37.16 0.33 -1.47 16 2 C 0.07 1.09 2.56 -67.71 -0.17 0.92 16 3 C -0.19 -2.45 8.50 37.15 0.32 -2.13 16 4 N -0.51 -7.79 4.15 -228.08 -0.95 -8.74 16 5 C 0.05 0.64 3.72 -3.83 -0.01 0.62 16 6 C -0.13 -1.30 5.31 -26.73 -0.14 -1.44 16 7 C 0.12 1.11 5.67 -4.04 -0.02 1.09 16 8 N -0.72 -6.05 5.56 -60.29 -0.33 -6.39 16 9 C 0.54 5.30 7.25 -10.99 -0.08 5.22 16 10 O -0.53 -7.01 16.26 5.56 0.09 -6.92 16 11 C -0.20 -1.31 6.17 -91.77 -0.57 -1.87 16 12 H 0.15 0.58 8.14 -51.93 -0.42 0.16 16 13 C -0.14 -0.79 10.01 -26.73 -0.27 -1.06 16 14 C 0.22 1.78 5.20 -26.73 -0.14 1.65 16 15 F -0.15 -1.62 17.13 2.25 0.04 -1.58 16 16 F -0.15 -1.30 17.60 2.25 0.04 -1.26 16 17 C 0.04 0.69 5.18 -4.98 -0.03 0.66 16 18 C 0.44 10.11 7.42 -10.99 -0.08 10.03 16 19 O -0.58 -15.00 13.97 5.54 0.08 -14.92 16 20 N -0.57 -13.97 5.29 -10.96 -0.06 -14.03 16 21 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 25 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.52 6.58 -51.93 -0.34 0.18 16 32 H 0.11 2.15 5.78 -51.93 -0.30 1.85 16 33 H 0.05 0.60 6.68 -51.93 -0.35 0.26 16 34 H 0.05 0.77 6.57 -51.93 -0.34 0.43 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.40 7.12 -51.93 -0.37 0.03 16 37 H 0.08 0.86 6.06 -51.93 -0.31 0.55 16 38 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.07 0.71 6.72 -51.93 -0.35 0.36 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.41 2.53 8.47 -40.82 -0.35 2.18 16 43 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.14 0.87 7.67 -51.93 -0.40 0.47 16 45 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 46 H 0.09 1.31 6.45 -51.93 -0.33 0.98 16 47 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -32.96 398.02 -7.49 -40.45 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.99 Total: 10.68 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.10 Total: 4.42 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.62 Total: -52.64 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.17 Total: -21.84 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.08 Total: -2.84 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.96 -7.49 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714824029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.807 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds