Wall clock time and date at job start Wed Apr 1 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47506 * 2 1 4 4 N 1.46905 * 109.46743 * 120.00175 * 2 1 3 5 5 C 1.46899 * 111.00068 * 294.16323 * 4 2 1 6 6 C 1.52994 * 109.46938 * 164.44991 * 5 4 2 7 7 C 1.53000 * 109.47043 * 183.76520 * 6 5 4 8 8 N 1.46505 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.34769 * 119.99956 * 180.02562 * 8 7 6 10 10 O 1.21275 * 120.00371 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99814 * 180.02562 * 9 8 7 12 12 H 1.08999 * 115.55049 * 34.32352 * 11 9 8 13 13 C 1.53003 * 117.50090 * 179.97438 * 11 9 8 14 14 C 1.53002 * 60.00051 * 107.48427 * 13 11 9 15 15 F 1.39898 * 117.50533 * 252.50723 * 14 13 11 16 16 F 1.39905 * 117.49546 * 107.48620 * 14 13 11 17 17 C 1.46900 * 110.99425 * 170.21469 * 4 2 1 18 18 C 1.50700 * 109.47308 * 293.94882 * 17 4 2 19 19 O 1.21297 * 119.99961 * 0.02562 * 18 17 4 20 20 N 1.34772 * 120.00131 * 180.02562 * 18 17 4 21 21 C 1.37104 * 120.00067 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00164 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00028 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00074 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99699 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47363 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46716 * 120.00045 * 25 23 21 28 28 H 1.48497 * 109.46879 * 239.99439 * 25 23 21 29 29 H 1.08998 * 109.47227 * 66.84984 * 1 2 3 30 30 H 1.08995 * 109.47803 * 186.85083 * 1 2 3 31 31 H 1.09004 * 109.47176 * 306.85161 * 1 2 3 32 32 H 1.09003 * 109.47051 * 239.99845 * 2 1 3 33 33 H 1.09003 * 109.47092 * 59.99870 * 3 2 1 34 34 H 1.08995 * 109.47441 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47220 * 300.00308 * 3 2 1 36 36 H 1.08997 * 109.47294 * 284.45660 * 5 4 2 37 37 H 1.09006 * 109.46740 * 44.45474 * 5 4 2 38 38 H 1.09007 * 109.47290 * 303.76281 * 6 5 4 39 39 H 1.09000 * 109.47252 * 63.76828 * 6 5 4 40 40 H 1.08998 * 109.47446 * 300.00110 * 7 6 5 41 41 H 1.09000 * 109.47087 * 60.00554 * 7 6 5 42 42 H 0.97005 * 119.99876 * 359.97438 * 8 7 6 43 43 H 1.08997 * 117.49902 * 214.97834 * 13 11 9 44 44 H 1.09002 * 117.49809 * 0.02562 * 13 11 9 45 45 H 1.09001 * 109.47429 * 53.95358 * 17 4 2 46 46 H 1.09007 * 109.46900 * 173.95354 * 17 4 2 47 47 H 0.97002 * 120.00468 * 0.02562 * 20 18 17 48 48 H 0.97000 * 120.00009 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.6658 0.0493 2.4170 6 6 1.8349 -0.8602 3.6356 7 6 1.3774 -0.1184 4.8931 8 7 1.5398 -0.9890 6.0601 9 6 1.1981 -0.5442 7.2855 10 8 0.7566 0.5770 7.4223 11 6 1.3658 -1.4396 8.4860 12 1 2.2224 -2.1130 8.4542 13 6 0.9605 -0.8764 9.8496 14 6 0.0957 -1.9430 9.1747 15 9 -1.1324 -1.5368 8.6419 16 9 0.1220 -3.2330 9.7154 17 6 3.4693 -0.9173 1.1226 18 6 3.7695 -1.8817 0.0042 19 8 2.8648 -2.3367 -0.6635 20 7 5.0431 -2.2387 -0.2541 21 6 5.3163 -3.1157 -1.2720 22 1 4.5108 -3.5208 -1.8665 23 6 6.6294 -3.4841 -1.5379 24 7 7.6095 -2.9916 -0.8143 25 14 7.0015 -4.6796 -2.9243 26 1 5.7333 -5.0855 -3.5817 27 1 7.8874 -4.0235 -3.9192 28 1 7.6795 -5.8805 -2.3737 29 1 -0.3633 0.4040 -0.9449 30 1 -0.3634 -1.0202 0.1226 31 1 -0.3634 0.6164 0.8224 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3189 0.9161 2.5171 37 1 0.6294 0.3808 2.3521 38 1 1.2323 -1.7591 3.5046 39 1 2.8838 -1.1378 3.7390 40 1 1.9799 0.7804 5.0242 41 1 0.3284 0.1592 4.7897 42 1 1.8927 -1.8860 5.9506 43 1 1.5499 -1.1798 10.7148 44 1 0.5721 0.1417 9.8784 45 1 3.9742 0.0296 0.9312 46 1 3.8229 -1.3335 2.0660 47 1 5.7666 -1.8752 0.2800 48 1 8.5262 -3.2485 -1.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714824029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:35 Heat of formation + Delta-G solvation = -162.162724 kcal Electronic energy + Delta-G solvation = -30341.578333 eV Core-core repulsion = 25681.470120 eV Total energy + Delta-G solvation = -4660.108213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.80443 -48.49444 -41.01285 -40.63450 -38.83422 -36.99675 -36.25537 -35.85036 -33.70117 -33.21704 -31.87504 -28.81212 -27.98038 -26.99922 -25.82991 -24.42974 -23.59865 -22.63630 -21.55638 -21.32376 -20.32643 -19.65645 -19.34215 -18.37637 -17.79953 -17.49480 -17.13485 -16.96511 -16.77043 -16.57773 -16.42898 -16.16199 -15.69190 -15.39617 -15.24687 -15.14001 -14.97484 -14.71632 -14.66576 -14.60997 -14.37490 -13.86363 -13.67219 -13.41113 -13.30841 -13.22714 -12.97755 -12.86275 -12.80209 -12.49347 -12.45506 -12.38636 -12.26859 -12.12587 -11.99830 -11.69029 -11.48586 -11.40137 -11.30368 -11.01118 -10.21065 -10.16846 -9.96516 -9.09288 -8.44947 -5.92765 1.02012 1.36676 1.41950 1.55631 1.86212 2.02602 2.09357 2.29528 2.29903 2.81521 3.13699 3.22255 3.33017 3.42419 3.48091 3.81456 3.90824 4.02215 4.11798 4.16416 4.31166 4.34390 4.44963 4.45666 4.49346 4.56479 4.60895 4.61511 4.72145 4.75333 4.79289 4.80436 4.87130 4.97607 5.12313 5.18454 5.23944 5.34447 5.38951 5.42932 5.47111 5.95653 6.17631 6.33698 6.38971 6.63758 7.05603 7.16167 7.60331 8.16662 8.72774 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.002012 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.059742 B =13910.742831 C =15471.156591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.068 3.932 3 C -0.178 4.178 4 N -0.523 5.523 5 C 0.056 3.944 6 C -0.119 4.119 7 C 0.128 3.872 8 N -0.711 5.711 9 C 0.536 3.464 10 O -0.568 6.568 11 C -0.188 4.188 12 H 0.185 0.815 13 C -0.121 4.121 14 C 0.199 3.801 15 F -0.173 7.173 16 F -0.158 7.158 17 C 0.054 3.946 18 C 0.443 3.557 19 O -0.613 6.613 20 N -0.577 5.577 21 C -0.327 4.327 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.417 0.583 43 H 0.168 0.832 44 H 0.127 0.873 45 H 0.065 0.935 46 H 0.110 0.890 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 7.012 20.443 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.040 4.040 3 C -0.237 4.237 4 N -0.247 5.247 5 C -0.072 4.072 6 C -0.158 4.158 7 C 0.004 3.996 8 N -0.362 5.362 9 C 0.322 3.678 10 O -0.447 6.447 11 C -0.209 4.209 12 H 0.202 0.798 13 C -0.159 4.159 14 C 0.162 3.838 15 F -0.154 7.154 16 F -0.138 7.138 17 C -0.077 4.077 18 C 0.231 3.769 19 O -0.498 6.498 20 N -0.215 5.215 21 C -0.457 4.457 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.196 1.196 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.254 0.746 43 H 0.185 0.815 44 H 0.145 0.855 45 H 0.082 0.918 46 H 0.128 0.872 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.514 6.985 20.065 23.705 hybrid contribution 1.102 -0.390 -0.907 1.480 sum -9.412 6.595 19.158 22.340 Atomic orbital electron populations 1.21719 0.93240 1.01676 1.02073 1.21775 0.96652 0.92322 0.93293 1.22427 1.00764 0.97258 1.03248 1.61788 1.11296 1.48937 1.02657 1.22094 1.02178 0.94754 0.88177 1.21688 1.02670 0.99348 0.92063 1.21264 1.01512 0.93326 0.83539 1.45878 1.65006 1.19202 1.06134 1.19650 0.77112 0.86737 0.84302 1.90719 1.46211 1.21644 1.86122 1.23856 0.99903 1.03013 0.94162 0.79779 1.24467 0.97234 0.98690 0.95461 1.20000 0.79649 0.81666 1.02463 1.93038 1.45657 1.89795 1.86875 1.93061 1.96419 1.38513 1.85823 1.21787 0.90435 0.97540 0.97952 1.20812 0.82456 0.85902 0.87751 1.90474 1.45889 1.59520 1.53963 1.41953 1.06888 1.41391 1.31254 1.19652 0.93186 1.22072 1.10802 0.90466 1.25985 0.94625 0.99851 1.00860 1.69672 1.00397 1.45201 1.41012 0.84917 0.78094 0.77889 0.77738 1.19905 1.19744 1.19631 0.91879 0.93463 0.91116 0.92042 0.90620 0.93766 0.91561 0.93240 0.89197 0.90781 0.90683 0.91160 0.91776 0.74590 0.81458 0.85456 0.91768 0.87248 0.77139 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.99 71.98 0.65 -2.65 16 2 C 0.07 2.07 2.56 44.91 0.11 2.18 16 3 C -0.18 -4.38 8.50 71.98 0.61 -3.77 16 4 N -0.52 -15.54 4.15 -875.52 -3.64 -19.18 16 5 C 0.06 1.16 3.72 86.30 0.32 1.48 16 6 C -0.12 -2.13 5.31 30.59 0.16 -1.96 16 7 C 0.13 2.12 5.67 86.38 0.49 2.61 16 8 N -0.71 -10.71 5.56 -463.06 -2.57 -13.28 16 9 C 0.54 9.71 7.25 87.66 0.64 10.35 16 10 O -0.57 -14.71 16.26 -3.01 -0.05 -14.76 16 11 C -0.19 -2.09 6.17 -11.54 -0.07 -2.16 16 12 H 0.18 0.75 8.14 -2.39 -0.02 0.74 16 13 C -0.12 -1.11 10.01 30.60 0.31 -0.80 16 14 C 0.20 2.95 5.20 30.60 0.16 3.11 16 15 F -0.17 -3.74 17.13 44.97 0.77 -2.97 16 16 F -0.16 -2.45 17.60 44.97 0.79 -1.66 16 17 C 0.05 1.78 5.18 85.56 0.44 2.22 16 18 C 0.44 20.56 7.42 87.66 0.65 21.21 16 19 O -0.61 -33.12 13.97 -3.08 -0.04 -33.17 16 20 N -0.58 -29.10 5.29 -306.98 -1.62 -30.72 16 21 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 22 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 25 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.44 6.58 -2.39 -0.02 1.42 16 32 H 0.06 2.49 5.78 -2.39 -0.01 2.48 16 33 H 0.07 1.50 6.68 -2.39 -0.02 1.49 16 34 H 0.04 1.17 6.57 -2.39 -0.02 1.15 16 35 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.05 0.93 7.12 -2.39 -0.02 0.91 16 37 H 0.09 1.71 6.06 -2.38 -0.01 1.69 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.30 6.72 -2.39 -0.02 1.29 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.42 4.29 8.47 -92.70 -0.79 3.50 16 43 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.13 1.47 7.67 -2.39 -0.02 1.45 16 45 H 0.06 1.95 6.39 -2.39 -0.02 1.93 16 46 H 0.11 3.11 6.45 -2.38 -0.02 3.09 16 47 H 0.39 18.92 7.90 -92.71 -0.73 18.19 16 48 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -74.09 398.02 1.20 -72.89 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.50 Total: 33.06 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.75 Total: 13.98 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -7.55 Total: -112.12 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.09 Total: -47.93 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 1.56 Total: -4.63 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.09 1.20 -72.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714824029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.272 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds