Wall clock time and date at job start Wed Apr 1 2020 05:07:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52990 * 109.47506 * 2 1
4 4 N 1.46905 * 109.46743 * 120.00175 * 2 1 3
5 5 C 1.46899 * 111.00068 * 294.16323 * 4 2 1
6 6 C 1.52994 * 109.46938 * 164.44991 * 5 4 2
7 7 C 1.53000 * 109.47043 * 183.76520 * 6 5 4
8 8 N 1.46505 * 109.47303 * 180.02562 * 7 6 5
9 9 C 1.34769 * 119.99956 * 180.02562 * 8 7 6
10 10 O 1.21275 * 120.00371 * 359.97438 * 9 8 7
11 11 C 1.50703 * 119.99814 * 180.02562 * 9 8 7
12 12 H 1.08999 * 115.55049 * 34.32352 * 11 9 8
13 13 C 1.53003 * 117.50090 * 179.97438 * 11 9 8
14 14 C 1.53002 * 60.00051 * 107.48427 * 13 11 9
15 15 F 1.39898 * 117.50533 * 252.50723 * 14 13 11
16 16 F 1.39905 * 117.49546 * 107.48620 * 14 13 11
17 17 C 1.46900 * 110.99425 * 170.21469 * 4 2 1
18 18 C 1.50700 * 109.47308 * 293.94882 * 17 4 2
19 19 O 1.21297 * 119.99961 * 0.02562 * 18 17 4
20 20 N 1.34772 * 120.00131 * 180.02562 * 18 17 4
21 21 C 1.37104 * 120.00067 * 180.02562 * 20 18 17
22 22 H 1.08000 * 120.00164 * 359.97438 * 21 20 18
23 23 C 1.38953 * 120.00028 * 180.02562 * 21 20 18
24 24 N 1.31409 * 120.00074 * 359.97438 * 23 21 20
25 25 Si 1.86802 * 119.99699 * 179.97438 * 23 21 20
26 26 H 1.48494 * 109.47363 * 359.97438 * 25 23 21
27 27 H 1.48498 * 109.46716 * 120.00045 * 25 23 21
28 28 H 1.48497 * 109.46879 * 239.99439 * 25 23 21
29 29 H 1.08998 * 109.47227 * 66.84984 * 1 2 3
30 30 H 1.08995 * 109.47803 * 186.85083 * 1 2 3
31 31 H 1.09004 * 109.47176 * 306.85161 * 1 2 3
32 32 H 1.09003 * 109.47051 * 239.99845 * 2 1 3
33 33 H 1.09003 * 109.47092 * 59.99870 * 3 2 1
34 34 H 1.08995 * 109.47441 * 179.97438 * 3 2 1
35 35 H 1.09004 * 109.47220 * 300.00308 * 3 2 1
36 36 H 1.08997 * 109.47294 * 284.45660 * 5 4 2
37 37 H 1.09006 * 109.46740 * 44.45474 * 5 4 2
38 38 H 1.09007 * 109.47290 * 303.76281 * 6 5 4
39 39 H 1.09000 * 109.47252 * 63.76828 * 6 5 4
40 40 H 1.08998 * 109.47446 * 300.00110 * 7 6 5
41 41 H 1.09000 * 109.47087 * 60.00554 * 7 6 5
42 42 H 0.97005 * 119.99876 * 359.97438 * 8 7 6
43 43 H 1.08997 * 117.49902 * 214.97834 * 13 11 9
44 44 H 1.09002 * 117.49809 * 0.02562 * 13 11 9
45 45 H 1.09001 * 109.47429 * 53.95358 * 17 4 2
46 46 H 1.09007 * 109.46900 * 173.95354 * 17 4 2
47 47 H 0.97002 * 120.00468 * 0.02562 * 20 18 17
48 48 H 0.97000 * 120.00009 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 7 2.0196 -0.6926 1.1995
5 6 1.6658 0.0493 2.4170
6 6 1.8349 -0.8602 3.6356
7 6 1.3774 -0.1184 4.8931
8 7 1.5398 -0.9890 6.0601
9 6 1.1981 -0.5442 7.2855
10 8 0.7566 0.5770 7.4223
11 6 1.3658 -1.4396 8.4860
12 1 2.2224 -2.1130 8.4542
13 6 0.9605 -0.8764 9.8496
14 6 0.0957 -1.9430 9.1747
15 9 -1.1324 -1.5368 8.6419
16 9 0.1220 -3.2330 9.7154
17 6 3.4693 -0.9173 1.1226
18 6 3.7695 -1.8817 0.0042
19 8 2.8648 -2.3367 -0.6635
20 7 5.0431 -2.2387 -0.2541
21 6 5.3163 -3.1157 -1.2720
22 1 4.5108 -3.5208 -1.8665
23 6 6.6294 -3.4841 -1.5379
24 7 7.6095 -2.9916 -0.8143
25 14 7.0015 -4.6796 -2.9243
26 1 5.7333 -5.0855 -3.5817
27 1 7.8874 -4.0235 -3.9192
28 1 7.6795 -5.8805 -2.3737
29 1 -0.3633 0.4040 -0.9449
30 1 -0.3634 -1.0202 0.1226
31 1 -0.3634 0.6164 0.8224
32 1 1.8933 -0.5139 -0.8900
33 1 1.6767 1.9562 0.8900
34 1 3.1300 1.4424 0.0005
35 1 1.6767 1.9563 -0.8900
36 1 2.3189 0.9161 2.5171
37 1 0.6294 0.3808 2.3521
38 1 1.2323 -1.7591 3.5046
39 1 2.8838 -1.1378 3.7390
40 1 1.9799 0.7804 5.0242
41 1 0.3284 0.1592 4.7897
42 1 1.8927 -1.8860 5.9506
43 1 1.5499 -1.1798 10.7148
44 1 0.5721 0.1417 9.8784
45 1 3.9742 0.0296 0.9312
46 1 3.8229 -1.3335 2.0660
47 1 5.7666 -1.8752 0.2800
48 1 8.5262 -3.2485 -1.0002
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714824029.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:07:35
Heat of formation + Delta-G solvation = -162.162724 kcal
Electronic energy + Delta-G solvation = -30341.578333 eV
Core-core repulsion = 25681.470120 eV
Total energy + Delta-G solvation = -4660.108213 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.181 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.80443 -48.49444 -41.01285 -40.63450 -38.83422 -36.99675 -36.25537 -35.85036
-33.70117 -33.21704 -31.87504 -28.81212 -27.98038 -26.99922 -25.82991 -24.42974
-23.59865 -22.63630 -21.55638 -21.32376 -20.32643 -19.65645 -19.34215 -18.37637
-17.79953 -17.49480 -17.13485 -16.96511 -16.77043 -16.57773 -16.42898 -16.16199
-15.69190 -15.39617 -15.24687 -15.14001 -14.97484 -14.71632 -14.66576 -14.60997
-14.37490 -13.86363 -13.67219 -13.41113 -13.30841 -13.22714 -12.97755 -12.86275
-12.80209 -12.49347 -12.45506 -12.38636 -12.26859 -12.12587 -11.99830 -11.69029
-11.48586 -11.40137 -11.30368 -11.01118 -10.21065 -10.16846 -9.96516 -9.09288
-8.44947 -5.92765 1.02012 1.36676 1.41950 1.55631 1.86212 2.02602
2.09357 2.29528 2.29903 2.81521 3.13699 3.22255 3.33017 3.42419
3.48091 3.81456 3.90824 4.02215 4.11798 4.16416 4.31166 4.34390
4.44963 4.45666 4.49346 4.56479 4.60895 4.61511 4.72145 4.75333
4.79289 4.80436 4.87130 4.97607 5.12313 5.18454 5.23944 5.34447
5.38951 5.42932 5.47111 5.95653 6.17631 6.33698 6.38971 6.63758
7.05603 7.16167 7.60331 8.16662 8.72774
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.011430 B = 0.002012 C = 0.001809
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2449.059742 B =13910.742831 C =15471.156591
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.068 3.932
3 C -0.178 4.178
4 N -0.523 5.523
5 C 0.056 3.944
6 C -0.119 4.119
7 C 0.128 3.872
8 N -0.711 5.711
9 C 0.536 3.464
10 O -0.568 6.568
11 C -0.188 4.188
12 H 0.185 0.815
13 C -0.121 4.121
14 C 0.199 3.801
15 F -0.173 7.173
16 F -0.158 7.158
17 C 0.054 3.946
18 C 0.443 3.557
19 O -0.613 6.613
20 N -0.577 5.577
21 C -0.327 4.327
22 H 0.077 0.923
23 C -0.014 4.014
24 N -0.921 5.921
25 Si 0.989 3.011
26 H -0.274 1.274
27 H -0.272 1.272
28 H -0.271 1.271
29 H 0.062 0.938
30 H 0.046 0.954
31 H 0.070 0.930
32 H 0.061 0.939
33 H 0.075 0.925
34 H 0.043 0.957
35 H 0.065 0.935
36 H 0.049 0.951
37 H 0.090 0.910
38 H 0.073 0.927
39 H 0.075 0.925
40 H 0.070 0.930
41 H 0.064 0.936
42 H 0.417 0.583
43 H 0.168 0.832
44 H 0.127 0.873
45 H 0.065 0.935
46 H 0.110 0.890
47 H 0.395 0.605
48 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.522 7.012 20.443 23.617
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.040 4.040
3 C -0.237 4.237
4 N -0.247 5.247
5 C -0.072 4.072
6 C -0.158 4.158
7 C 0.004 3.996
8 N -0.362 5.362
9 C 0.322 3.678
10 O -0.447 6.447
11 C -0.209 4.209
12 H 0.202 0.798
13 C -0.159 4.159
14 C 0.162 3.838
15 F -0.154 7.154
16 F -0.138 7.138
17 C -0.077 4.077
18 C 0.231 3.769
19 O -0.498 6.498
20 N -0.215 5.215
21 C -0.457 4.457
22 H 0.095 0.905
23 C -0.213 4.213
24 N -0.563 5.563
25 Si 0.814 3.186
26 H -0.199 1.199
27 H -0.197 1.197
28 H -0.196 1.196
29 H 0.081 0.919
30 H 0.065 0.935
31 H 0.089 0.911
32 H 0.080 0.920
33 H 0.094 0.906
34 H 0.062 0.938
35 H 0.084 0.916
36 H 0.068 0.932
37 H 0.108 0.892
38 H 0.092 0.908
39 H 0.093 0.907
40 H 0.088 0.912
41 H 0.082 0.918
42 H 0.254 0.746
43 H 0.185 0.815
44 H 0.145 0.855
45 H 0.082 0.918
46 H 0.128 0.872
47 H 0.229 0.771
48 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -10.514 6.985 20.065 23.705
hybrid contribution 1.102 -0.390 -0.907 1.480
sum -9.412 6.595 19.158 22.340
Atomic orbital electron populations
1.21719 0.93240 1.01676 1.02073 1.21775 0.96652 0.92322 0.93293
1.22427 1.00764 0.97258 1.03248 1.61788 1.11296 1.48937 1.02657
1.22094 1.02178 0.94754 0.88177 1.21688 1.02670 0.99348 0.92063
1.21264 1.01512 0.93326 0.83539 1.45878 1.65006 1.19202 1.06134
1.19650 0.77112 0.86737 0.84302 1.90719 1.46211 1.21644 1.86122
1.23856 0.99903 1.03013 0.94162 0.79779 1.24467 0.97234 0.98690
0.95461 1.20000 0.79649 0.81666 1.02463 1.93038 1.45657 1.89795
1.86875 1.93061 1.96419 1.38513 1.85823 1.21787 0.90435 0.97540
0.97952 1.20812 0.82456 0.85902 0.87751 1.90474 1.45889 1.59520
1.53963 1.41953 1.06888 1.41391 1.31254 1.19652 0.93186 1.22072
1.10802 0.90466 1.25985 0.94625 0.99851 1.00860 1.69672 1.00397
1.45201 1.41012 0.84917 0.78094 0.77889 0.77738 1.19905 1.19744
1.19631 0.91879 0.93463 0.91116 0.92042 0.90620 0.93766 0.91561
0.93240 0.89197 0.90781 0.90683 0.91160 0.91776 0.74590 0.81458
0.85456 0.91768 0.87248 0.77139 0.91408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.30 8.99 71.98 0.65 -2.65 16
2 C 0.07 2.07 2.56 44.91 0.11 2.18 16
3 C -0.18 -4.38 8.50 71.98 0.61 -3.77 16
4 N -0.52 -15.54 4.15 -875.52 -3.64 -19.18 16
5 C 0.06 1.16 3.72 86.30 0.32 1.48 16
6 C -0.12 -2.13 5.31 30.59 0.16 -1.96 16
7 C 0.13 2.12 5.67 86.38 0.49 2.61 16
8 N -0.71 -10.71 5.56 -463.06 -2.57 -13.28 16
9 C 0.54 9.71 7.25 87.66 0.64 10.35 16
10 O -0.57 -14.71 16.26 -3.01 -0.05 -14.76 16
11 C -0.19 -2.09 6.17 -11.54 -0.07 -2.16 16
12 H 0.18 0.75 8.14 -2.39 -0.02 0.74 16
13 C -0.12 -1.11 10.01 30.60 0.31 -0.80 16
14 C 0.20 2.95 5.20 30.60 0.16 3.11 16
15 F -0.17 -3.74 17.13 44.97 0.77 -2.97 16
16 F -0.16 -2.45 17.60 44.97 0.79 -1.66 16
17 C 0.05 1.78 5.18 85.56 0.44 2.22 16
18 C 0.44 20.56 7.42 87.66 0.65 21.21 16
19 O -0.61 -33.12 13.97 -3.08 -0.04 -33.17 16
20 N -0.58 -29.10 5.29 -306.98 -1.62 -30.72 16
21 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16
22 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16
23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16
24 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16
25 Si 0.99 42.72 29.55 68.60 2.03 44.74 16
26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16
27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
28 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16
29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
31 H 0.07 1.44 6.58 -2.39 -0.02 1.42 16
32 H 0.06 2.49 5.78 -2.39 -0.01 2.48 16
33 H 0.07 1.50 6.68 -2.39 -0.02 1.49 16
34 H 0.04 1.17 6.57 -2.39 -0.02 1.15 16
35 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16
36 H 0.05 0.93 7.12 -2.39 -0.02 0.91 16
37 H 0.09 1.71 6.06 -2.38 -0.01 1.69 16
38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16
39 H 0.07 1.30 6.72 -2.39 -0.02 1.29 16
40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
42 H 0.42 4.29 8.47 -92.70 -0.79 3.50 16
43 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16
44 H 0.13 1.47 7.67 -2.39 -0.02 1.45 16
45 H 0.06 1.95 6.39 -2.39 -0.02 1.93 16
46 H 0.11 3.11 6.45 -2.38 -0.02 3.09 16
47 H 0.39 18.92 7.90 -92.71 -0.73 18.19 16
48 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16
Total: -1.00 -74.09 398.02 1.20 -72.89
By element:
Atomic # 1 Polarization: 33.56 SS G_CDS: -0.50 Total: 33.06 kcal
Atomic # 6 Polarization: 8.23 SS G_CDS: 5.75 Total: 13.98 kcal
Atomic # 7 Polarization: -104.57 SS G_CDS: -7.55 Total: -112.12 kcal
Atomic # 8 Polarization: -47.84 SS G_CDS: -0.09 Total: -47.93 kcal
Atomic # 9 Polarization: -6.19 SS G_CDS: 1.56 Total: -4.63 kcal
Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal
Total: -74.09 1.20 -72.89 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714824029.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -89.272 kcal
(2) G-P(sol) polarization free energy of solvation -74.088 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.163 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds