Wall clock time and date at job start Wed Apr 1 2020 04:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46885 * 2 1 4 4 C 1.52995 * 109.47451 * 119.99932 * 2 1 3 5 5 C 1.52999 * 109.46884 * 65.00225 * 4 2 1 6 6 H 1.08997 * 109.47237 * 304.99912 * 5 4 2 7 7 C 1.53004 * 109.46840 * 184.99881 * 5 4 2 8 8 N 1.46901 * 109.46916 * 184.99885 * 7 5 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 O 1.21297 * 120.00124 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00196 * 180.02562 * 10 9 8 13 13 C 1.37100 * 120.00290 * 180.02562 * 12 10 9 14 14 H 1.07990 * 119.99768 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99812 * 180.02562 * 13 12 10 16 16 N 1.31408 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99403 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47056 * 90.00522 * 17 15 13 19 19 H 1.48505 * 109.46897 * 209.99554 * 17 15 13 20 20 H 1.48495 * 109.47527 * 330.00091 * 17 15 13 21 21 N 1.46493 * 109.47205 * 65.00238 * 5 4 2 22 22 C 1.34775 * 120.00138 * 274.99639 * 21 5 4 23 23 O 1.21287 * 119.99725 * 0.02562 * 22 21 5 24 24 C 1.50703 * 120.00338 * 179.97438 * 22 21 5 25 25 H 1.08997 * 115.54890 * 325.67024 * 24 22 21 26 26 C 1.53001 * 117.49693 * 111.38120 * 24 22 21 27 27 C 1.53000 * 60.00088 * 107.48833 * 26 24 22 28 28 F 1.39897 * 117.49652 * 252.50963 * 27 26 24 29 29 F 1.39898 * 117.51644 * 107.47741 * 27 26 24 30 30 H 1.09000 * 109.47329 * 60.00257 * 1 2 3 31 31 H 1.09003 * 109.46823 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47206 * 299.99373 * 1 2 3 33 33 H 1.08998 * 109.47206 * 240.00627 * 2 1 3 34 34 H 1.08993 * 109.47308 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47311 * 300.00220 * 3 2 1 36 36 H 1.09004 * 109.47077 * 60.00064 * 3 2 1 37 37 H 1.09001 * 109.47296 * 304.99994 * 4 2 1 38 38 H 1.09005 * 109.47119 * 185.00145 * 4 2 1 39 39 H 1.09004 * 109.46889 * 65.00266 * 7 5 4 40 40 H 1.08995 * 109.47384 * 304.99906 * 7 5 4 41 41 H 1.00901 * 111.00067 * 303.95263 * 8 7 5 42 42 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 43 43 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 44 44 H 0.97009 * 119.99629 * 359.97438 * 12 10 9 45 45 H 0.97004 * 119.99642 * 179.97438 * 16 15 13 46 46 H 0.97001 * 120.00215 * 94.99701 * 21 5 4 47 47 H 1.08997 * 117.49728 * 214.97828 * 26 24 22 48 48 H 1.09003 * 117.49838 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1954 1.1879 6 1 0.5565 -2.2707 1.0527 7 6 2.0356 -2.8888 2.4917 8 7 1.7565 -4.3272 2.3871 9 6 2.1285 -5.0270 3.6240 10 6 1.8290 -6.4968 3.4791 11 8 1.3529 -6.9199 2.4468 12 7 2.0901 -7.3413 4.4965 13 6 1.8181 -8.6785 4.3645 14 1 1.3942 -9.0551 3.4454 15 6 2.0869 -9.5490 5.4137 16 7 2.6022 -9.0906 6.5322 17 14 1.7156 -11.3709 5.2340 18 1 2.9052 -12.0663 4.6802 19 1 1.3832 -11.9418 6.5640 20 1 0.5634 -11.5530 4.3151 21 7 2.3149 -2.8419 0.0625 22 6 1.7816 -2.7778 -1.1736 23 8 0.7394 -2.1844 -1.3543 24 6 2.4809 -3.4424 -2.3314 25 1 3.5700 -3.4339 -2.2903 26 6 1.8064 -4.6654 -2.9562 27 6 1.8250 -3.3338 -3.7094 28 9 0.6220 -2.6251 -3.7981 29 9 2.6692 -3.2312 -4.8202 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6055 -0.2617 2.1370 38 1 3.1265 -0.6442 1.2951 39 1 1.4635 -2.4668 3.3181 40 1 3.0999 -2.7374 2.6719 41 1 0.7881 -4.4918 2.1562 42 1 3.1934 -4.8904 3.8125 43 1 1.5568 -4.6198 4.4579 44 1 2.4712 -7.0030 5.3219 45 1 2.7895 -9.6982 7.2648 46 1 3.1486 -3.3162 0.2070 47 1 2.4519 -5.4619 -3.3262 48 1 0.8572 -4.9895 -2.5295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714919904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:14 Heat of formation + Delta-G solvation = -148.251122 kcal Electronic energy + Delta-G solvation = -31236.432351 eV Core-core repulsion = 26576.927390 eV Total energy + Delta-G solvation = -4659.504961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.81633 -47.45401 -40.38071 -38.38302 -37.47673 -35.67955 -35.40378 -34.10824 -33.61494 -31.28238 -30.34191 -27.37702 -27.11557 -25.33153 -24.78964 -23.35407 -22.74520 -21.37949 -20.46008 -19.99750 -19.29547 -18.43733 -17.94467 -17.20601 -16.73229 -16.42227 -16.09701 -16.03292 -15.53671 -15.10408 -14.65739 -14.58537 -14.43730 -14.20781 -14.09095 -13.86581 -13.84060 -13.65999 -13.42469 -13.41591 -13.14142 -12.92569 -12.72395 -12.37445 -12.28538 -12.06273 -11.78607 -11.60430 -11.54387 -11.47324 -11.31739 -11.07693 -10.86362 -10.61337 -10.48203 -10.43035 -10.35339 -10.26055 -9.81111 -9.55295 -9.03408 -8.53808 -8.16622 -8.00974 -6.46286 -3.87208 2.16133 2.64722 2.88080 3.14461 3.23586 3.25213 3.29194 3.85404 3.95843 4.01124 4.16115 4.24008 4.37401 4.61953 4.67653 4.84279 4.86921 5.00635 5.09240 5.17075 5.19689 5.23635 5.32697 5.34358 5.44821 5.51016 5.52703 5.63464 5.65099 5.72330 5.73467 5.83633 5.89672 5.90150 5.99018 6.15889 6.20504 6.37016 6.42088 6.52728 7.07663 7.44576 7.50855 7.52865 8.01463 8.14416 8.56173 9.13319 9.49383 10.00475 10.71404 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.002419 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.962763 B =11572.232324 C =13465.643343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.125 4.125 5 C 0.148 3.852 6 H 0.092 0.908 7 C 0.047 3.953 8 N -0.665 5.665 9 C 0.050 3.950 10 C 0.440 3.560 11 O -0.583 6.583 12 N -0.563 5.563 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 N -0.696 5.696 22 C 0.540 3.460 23 O -0.517 6.517 24 C -0.193 4.193 25 H 0.145 0.855 26 C -0.143 4.143 27 C 0.225 3.775 28 F -0.139 7.139 29 F -0.160 7.160 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.407 0.593 47 H 0.132 0.868 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 17.320 -12.078 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.164 4.164 5 C 0.043 3.957 6 H 0.110 0.890 7 C -0.083 4.083 8 N -0.298 5.298 9 C -0.082 4.082 10 C 0.225 3.775 11 O -0.467 6.467 12 N -0.200 5.200 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.347 5.347 22 C 0.325 3.675 23 O -0.394 6.394 24 C -0.215 4.215 25 H 0.163 0.837 26 C -0.181 4.181 27 C 0.187 3.813 28 F -0.119 7.119 29 F -0.140 7.140 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.242 0.758 47 H 0.151 0.849 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.991 17.240 -13.047 21.712 hybrid contribution -0.003 -0.542 1.165 1.285 sum 1.989 16.698 -11.881 20.590 Atomic orbital electron populations 1.21835 0.94786 1.02961 0.99995 1.21134 0.96680 0.95076 0.98242 1.21867 1.00396 0.96785 1.01393 1.22060 1.01153 0.94301 0.98844 1.21121 0.98575 0.91065 0.84954 0.89041 1.22304 1.01810 0.88869 0.95337 1.60080 1.28965 1.06855 1.33899 1.21681 1.01508 0.94194 0.90864 1.19785 0.85209 0.87139 0.85328 1.90527 1.49098 1.78008 1.29097 1.41870 1.55819 1.07626 1.14665 1.19694 1.39304 0.82239 1.01690 0.87929 1.25265 0.97032 1.00672 0.94946 1.69609 1.43724 1.36389 1.04566 0.85861 0.78967 0.81946 0.77545 1.20365 1.20917 1.19405 1.45666 1.27401 1.55140 1.06467 1.19110 0.85079 0.80087 0.83208 1.90791 1.22424 1.42033 1.84107 1.23632 1.02545 1.02868 0.92462 0.83710 1.24277 1.04859 0.91053 0.97918 1.19538 0.80155 0.99011 0.82575 1.93121 1.42985 1.79480 1.96342 1.93039 1.69943 1.96789 1.54265 0.93524 0.90706 0.94256 0.90644 0.93241 0.93022 0.93045 0.91028 0.91668 0.93840 0.90439 0.83005 0.89606 0.93840 0.77480 0.91839 0.75798 0.84946 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.04 37.16 0.30 -1.23 16 2 C -0.09 -0.93 2.38 -90.62 -0.22 -1.14 16 3 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 4 C -0.12 -1.08 4.36 -26.73 -0.12 -1.19 16 5 C 0.15 1.45 2.41 -67.93 -0.16 1.28 16 6 H 0.09 1.06 5.92 -51.93 -0.31 0.76 16 7 C 0.05 0.47 5.24 -3.82 -0.02 0.45 16 8 N -0.67 -9.32 5.85 -115.05 -0.67 -9.99 16 9 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 10 C 0.44 9.85 7.82 -10.99 -0.09 9.77 16 11 O -0.58 -15.11 15.78 5.54 0.09 -15.03 16 12 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 13 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 14 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 17 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 N -0.70 -6.78 4.75 -53.81 -0.26 -7.04 16 22 C 0.54 6.01 6.17 -10.98 -0.07 5.94 16 23 O -0.52 -7.10 10.10 5.55 0.06 -7.04 16 24 C -0.19 -1.76 6.17 -91.77 -0.57 -2.32 16 25 H 0.15 0.94 8.14 -51.93 -0.42 0.51 16 26 C -0.14 -1.24 10.20 -26.73 -0.27 -1.51 16 27 C 0.22 2.39 5.19 -26.73 -0.14 2.25 16 28 F -0.14 -1.87 15.71 2.25 0.04 -1.84 16 29 F -0.16 -1.73 17.60 2.25 0.04 -1.69 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.95 4.76 -51.93 -0.25 0.70 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.88 5.19 -51.93 -0.27 0.62 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.35 5.44 8.43 -39.29 -0.33 5.11 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.41 3.56 8.60 -40.82 -0.35 3.20 16 47 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -31.58 397.79 -7.61 -39.19 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -7.26 Total: 14.67 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.28 Total: 4.31 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.26 Total: -54.20 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.14 Total: -22.07 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.58 -7.61 -39.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714919904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.062 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds