Wall clock time and date at job start Wed Apr 1 2020 04:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46885 * 2 1 4 4 C 1.52995 * 109.47451 * 119.99932 * 2 1 3 5 5 C 1.52999 * 109.46884 * 65.00225 * 4 2 1 6 6 H 1.08997 * 109.47237 * 304.99912 * 5 4 2 7 7 C 1.53004 * 109.46840 * 184.99881 * 5 4 2 8 8 N 1.46901 * 109.46916 * 184.99885 * 7 5 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 O 1.21297 * 120.00124 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00196 * 180.02562 * 10 9 8 13 13 C 1.37100 * 120.00290 * 180.02562 * 12 10 9 14 14 H 1.07990 * 119.99768 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99812 * 180.02562 * 13 12 10 16 16 N 1.31408 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99403 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47056 * 90.00522 * 17 15 13 19 19 H 1.48505 * 109.46897 * 209.99554 * 17 15 13 20 20 H 1.48495 * 109.47527 * 330.00091 * 17 15 13 21 21 N 1.46493 * 109.47205 * 65.00238 * 5 4 2 22 22 C 1.34775 * 120.00138 * 274.99639 * 21 5 4 23 23 O 1.21287 * 119.99725 * 0.02562 * 22 21 5 24 24 C 1.50703 * 120.00338 * 179.97438 * 22 21 5 25 25 H 1.08997 * 115.54890 * 325.67024 * 24 22 21 26 26 C 1.53001 * 117.49693 * 111.38120 * 24 22 21 27 27 C 1.53000 * 60.00088 * 107.48833 * 26 24 22 28 28 F 1.39897 * 117.49652 * 252.50963 * 27 26 24 29 29 F 1.39898 * 117.51644 * 107.47741 * 27 26 24 30 30 H 1.09000 * 109.47329 * 60.00257 * 1 2 3 31 31 H 1.09003 * 109.46823 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47206 * 299.99373 * 1 2 3 33 33 H 1.08998 * 109.47206 * 240.00627 * 2 1 3 34 34 H 1.08993 * 109.47308 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47311 * 300.00220 * 3 2 1 36 36 H 1.09004 * 109.47077 * 60.00064 * 3 2 1 37 37 H 1.09001 * 109.47296 * 304.99994 * 4 2 1 38 38 H 1.09005 * 109.47119 * 185.00145 * 4 2 1 39 39 H 1.09004 * 109.46889 * 65.00266 * 7 5 4 40 40 H 1.08995 * 109.47384 * 304.99906 * 7 5 4 41 41 H 1.00901 * 111.00067 * 303.95263 * 8 7 5 42 42 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 43 43 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 44 44 H 0.97009 * 119.99629 * 359.97438 * 12 10 9 45 45 H 0.97004 * 119.99642 * 179.97438 * 16 15 13 46 46 H 0.97001 * 120.00215 * 94.99701 * 21 5 4 47 47 H 1.08997 * 117.49728 * 214.97828 * 26 24 22 48 48 H 1.09003 * 117.49838 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1954 1.1879 6 1 0.5565 -2.2707 1.0527 7 6 2.0356 -2.8888 2.4917 8 7 1.7565 -4.3272 2.3871 9 6 2.1285 -5.0270 3.6240 10 6 1.8290 -6.4968 3.4791 11 8 1.3529 -6.9199 2.4468 12 7 2.0901 -7.3413 4.4965 13 6 1.8181 -8.6785 4.3645 14 1 1.3942 -9.0551 3.4454 15 6 2.0869 -9.5490 5.4137 16 7 2.6022 -9.0906 6.5322 17 14 1.7156 -11.3709 5.2340 18 1 2.9052 -12.0663 4.6802 19 1 1.3832 -11.9418 6.5640 20 1 0.5634 -11.5530 4.3151 21 7 2.3149 -2.8419 0.0625 22 6 1.7816 -2.7778 -1.1736 23 8 0.7394 -2.1844 -1.3543 24 6 2.4809 -3.4424 -2.3314 25 1 3.5700 -3.4339 -2.2903 26 6 1.8064 -4.6654 -2.9562 27 6 1.8250 -3.3338 -3.7094 28 9 0.6220 -2.6251 -3.7981 29 9 2.6692 -3.2312 -4.8202 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6055 -0.2617 2.1370 38 1 3.1265 -0.6442 1.2951 39 1 1.4635 -2.4668 3.3181 40 1 3.0999 -2.7374 2.6719 41 1 0.7881 -4.4918 2.1562 42 1 3.1934 -4.8904 3.8125 43 1 1.5568 -4.6198 4.4579 44 1 2.4712 -7.0030 5.3219 45 1 2.7895 -9.6982 7.2648 46 1 3.1486 -3.3162 0.2070 47 1 2.4519 -5.4619 -3.3262 48 1 0.8572 -4.9895 -2.5295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714919904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:13 Heat of formation + Delta-G solvation = -170.622087 kcal Electronic energy + Delta-G solvation = -31237.402429 eV Core-core repulsion = 26576.927390 eV Total energy + Delta-G solvation = -4660.475039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.67893 -48.35114 -41.23101 -40.09268 -38.38400 -36.67362 -36.28610 -35.83831 -34.73286 -33.23165 -31.28100 -28.62096 -27.95899 -26.63610 -25.85750 -24.57358 -23.54028 -22.20757 -21.29500 -21.05537 -20.74229 -19.88203 -19.27091 -18.14812 -17.67362 -17.60273 -17.19309 -16.92142 -16.72404 -16.41541 -16.12870 -15.89544 -15.40301 -15.28438 -15.13317 -15.00091 -14.75908 -14.65041 -14.54893 -14.41898 -14.35960 -13.87156 -13.58099 -13.48864 -13.40790 -13.09959 -13.03996 -12.99422 -12.74385 -12.54398 -12.39973 -12.27725 -12.13225 -12.11684 -11.68983 -11.48278 -11.39140 -11.27817 -11.13517 -10.69542 -10.31365 -9.98922 -9.85094 -9.31489 -8.45271 -5.93312 1.34268 1.38872 1.43023 1.55050 1.85745 2.09209 2.10630 2.30074 2.45870 2.90560 3.22882 3.27925 3.40811 3.54286 3.57288 3.79351 3.93271 4.07206 4.10788 4.28141 4.34385 4.38594 4.51895 4.54516 4.58805 4.62194 4.64152 4.73413 4.77367 4.80134 4.87121 4.91203 4.93127 5.06528 5.13984 5.22092 5.39084 5.42819 5.56018 5.62036 5.66394 5.89740 6.11500 6.35393 6.62578 6.65466 7.15244 7.33442 7.59877 8.15182 8.72118 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.002419 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.962763 B =11572.232324 C =13465.643343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.116 4.116 5 C 0.151 3.849 6 H 0.070 0.930 7 C 0.053 3.947 8 N -0.674 5.674 9 C 0.065 3.935 10 C 0.438 3.562 11 O -0.622 6.622 12 N -0.575 5.575 13 C -0.331 4.331 14 H 0.078 0.922 15 C -0.013 4.013 16 N -0.921 5.921 17 Si 0.990 3.010 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.274 1.274 21 N -0.689 5.689 22 C 0.533 3.467 23 O -0.548 6.548 24 C -0.184 4.184 25 H 0.176 0.824 26 C -0.130 4.130 27 C 0.203 3.797 28 F -0.162 7.162 29 F -0.162 7.162 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.339 0.661 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.414 0.586 47 H 0.160 0.840 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 17.802 -11.047 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.155 4.155 5 C 0.046 3.954 6 H 0.088 0.912 7 C -0.076 4.076 8 N -0.305 5.305 9 C -0.067 4.067 10 C 0.226 3.774 11 O -0.508 6.508 12 N -0.212 5.212 13 C -0.461 4.461 14 H 0.096 0.904 15 C -0.212 4.212 16 N -0.562 5.562 17 Si 0.814 3.186 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.199 1.199 21 N -0.339 5.339 22 C 0.318 3.682 23 O -0.427 6.427 24 C -0.206 4.206 25 H 0.194 0.806 26 C -0.168 4.168 27 C 0.165 3.835 28 F -0.143 7.143 29 F -0.143 7.143 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.157 0.843 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.086 0.914 46 H 0.251 0.749 47 H 0.178 0.822 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.638 17.745 -11.992 21.724 hybrid contribution -0.537 -0.629 0.799 1.150 sum 3.100 17.116 -11.194 20.685 Atomic orbital electron populations 1.21767 0.95898 1.01602 0.99809 1.21081 0.95688 0.95993 0.98248 1.21826 1.00972 0.95731 1.01535 1.21993 1.02057 0.92961 0.98484 1.21066 0.97454 0.91996 0.84834 0.91198 1.22366 1.03205 0.86298 0.95734 1.60084 1.28223 1.09223 1.33002 1.21542 1.03221 0.89493 0.92426 1.20938 0.82982 0.89582 0.83909 1.90500 1.50308 1.79500 1.30522 1.41945 1.56639 1.07174 1.15483 1.19636 1.40919 0.84098 1.01426 0.90386 1.25991 0.96468 1.04352 0.94429 1.69665 1.43879 1.37723 1.04929 0.84975 0.78687 0.77215 0.77773 1.19610 1.19727 1.19856 1.45639 1.27417 1.54769 1.06099 1.19461 0.84842 0.79839 0.84012 1.90790 1.23845 1.43429 1.84612 1.23741 1.03970 1.02312 0.90543 0.80615 1.24378 1.04854 0.91016 0.96569 1.19837 0.79865 1.00480 0.83271 1.93065 1.44520 1.80200 1.96496 1.93025 1.69833 1.96900 1.54506 0.94931 0.92648 0.93100 0.92521 0.92249 0.93717 0.92105 0.89768 0.90133 0.92419 0.88420 0.84273 0.87205 0.91769 0.76991 0.91368 0.74943 0.82235 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.04 71.98 0.58 -2.38 16 2 C -0.09 -1.74 2.38 -10.79 -0.03 -1.76 16 3 C -0.14 -2.27 9.19 71.98 0.66 -1.61 16 4 C -0.12 -1.73 4.36 30.59 0.13 -1.59 16 5 C 0.15 2.71 2.41 44.99 0.11 2.82 16 6 H 0.07 1.61 5.92 -2.39 -0.01 1.59 16 7 C 0.05 0.91 5.24 86.30 0.45 1.37 16 8 N -0.67 -17.55 5.85 -517.92 -3.03 -20.58 16 9 C 0.07 1.94 6.17 85.55 0.53 2.47 16 10 C 0.44 19.44 7.82 87.66 0.69 20.12 16 11 O -0.62 -32.58 15.78 -3.08 -0.05 -32.63 16 12 N -0.57 -28.15 5.29 -306.99 -1.62 -29.77 16 13 C -0.33 -18.26 9.68 84.04 0.81 -17.45 16 14 H 0.08 4.61 7.16 -2.92 -0.02 4.59 16 15 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 16 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 17 Si 0.99 42.02 29.55 68.60 2.03 44.05 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 N -0.69 -12.44 4.75 -442.54 -2.10 -14.55 16 22 C 0.53 11.66 6.17 87.66 0.54 12.20 16 23 O -0.55 -15.53 10.10 -3.05 -0.03 -15.56 16 24 C -0.18 -3.15 6.17 -11.54 -0.07 -3.23 16 25 H 0.18 1.83 8.14 -2.39 -0.02 1.81 16 26 C -0.13 -2.16 10.20 30.59 0.31 -1.85 16 27 C 0.20 4.30 5.19 30.60 0.16 4.46 16 28 F -0.16 -4.59 15.71 44.97 0.71 -3.88 16 29 F -0.16 -3.44 17.60 44.97 0.79 -2.65 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 1.45 4.76 -2.39 -0.01 1.44 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.31 5.19 -2.39 -0.01 1.30 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.34 10.27 8.43 -89.69 -0.76 9.52 16 42 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.40 18.38 7.90 -92.70 -0.73 17.65 16 45 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 46 H 0.41 6.28 8.60 -92.71 -0.80 5.48 16 47 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -70.19 397.79 1.05 -69.14 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -1.27 Total: 41.31 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 5.34 Total: 13.38 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -6.47 Total: -113.16 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.08 Total: -48.19 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 1.50 Total: -6.53 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -70.19 1.05 -69.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714919904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.480 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds