Wall clock time and date at job start Wed Apr 1 2020 04:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47193 * 2 1 4 4 C 1.52999 * 109.47034 * 119.99899 * 2 1 3 5 5 C 1.53005 * 109.46945 * 174.83146 * 4 2 1 6 6 H 1.09005 * 109.46743 * 54.21023 * 5 4 2 7 7 C 1.52995 * 109.47398 * 294.20752 * 5 4 2 8 8 N 1.46896 * 109.47425 * 184.99746 * 7 5 4 9 9 C 1.46901 * 111.00334 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.46935 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00230 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99650 * 180.02562 * 10 9 8 13 13 C 1.37099 * 120.00088 * 179.97438 * 12 10 9 14 14 H 1.08005 * 119.99709 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00533 * 179.97438 * 13 12 10 16 16 N 1.31421 * 119.99692 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00568 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47018 * 89.99853 * 17 15 13 19 19 H 1.48495 * 109.47215 * 210.00397 * 17 15 13 20 20 H 1.48506 * 109.46957 * 329.99962 * 17 15 13 21 21 N 1.46495 * 109.47152 * 174.20214 * 5 4 2 22 22 C 1.34775 * 120.00368 * 272.05112 * 21 5 4 23 23 O 1.21279 * 120.00076 * 5.09433 * 22 21 5 24 24 C 1.50701 * 120.00056 * 185.09605 * 22 21 5 25 25 H 1.09000 * 115.54842 * 34.41863 * 24 22 21 26 26 C 1.52996 * 117.50203 * 248.74853 * 24 22 21 27 27 C 1.53002 * 117.49830 * 180.08452 * 24 22 21 28 28 F 1.39903 * 117.49821 * 214.97816 * 27 24 22 29 29 F 1.39897 * 117.49858 * 359.97438 * 27 24 22 30 30 H 1.09009 * 109.46954 * 300.00200 * 1 2 3 31 31 H 1.08997 * 109.47063 * 59.99777 * 1 2 3 32 32 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46700 * 239.99881 * 2 1 3 34 34 H 1.08997 * 109.46772 * 185.53909 * 3 2 1 35 35 H 1.08999 * 109.46907 * 305.53432 * 3 2 1 36 36 H 1.08994 * 109.47288 * 65.54152 * 3 2 1 37 37 H 1.08997 * 109.46955 * 54.83878 * 4 2 1 38 38 H 1.08994 * 109.47276 * 294.83082 * 4 2 1 39 39 H 1.09001 * 109.47370 * 64.99781 * 7 5 4 40 40 H 1.08999 * 109.47179 * 304.99642 * 7 5 4 41 41 H 1.00908 * 110.99631 * 56.04218 * 8 7 5 42 42 H 1.09002 * 109.46718 * 60.00170 * 9 8 7 43 43 H 1.08995 * 109.47068 * 300.00236 * 9 8 7 44 44 H 0.97000 * 120.00396 * 0.02562 * 12 10 9 45 45 H 0.96994 * 119.99835 * 179.97438 * 16 15 13 46 46 H 0.97009 * 119.99662 * 92.04935 * 21 5 4 47 47 H 1.09004 * 117.49532 * 359.97438 * 26 24 22 48 48 H 1.08999 * 117.50419 * 145.02264 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5645 -0.8347 1.1859 6 1 3.9965 0.1546 1.0351 7 6 3.9602 -1.7468 0.0231 8 7 5.4147 -1.9521 0.0347 9 6 5.8320 -2.8255 -1.0702 10 6 7.3266 -3.0130 -1.0254 11 8 7.9800 -2.4718 -0.1585 12 7 7.9374 -3.7812 -1.9491 13 6 9.2972 -3.9513 -1.9086 14 1 9.8789 -3.4701 -1.1363 15 6 9.9269 -4.7437 -2.8606 16 7 9.2191 -5.3297 -3.8001 17 14 11.7796 -4.9762 -2.8051 18 1 12.1053 -6.1580 -1.9671 19 1 12.2933 -5.1889 -4.1820 20 1 12.4130 -3.7662 -2.2219 21 7 4.0647 -1.3995 2.4417 22 6 4.3541 -0.5876 3.4778 23 8 4.1140 0.5989 3.4039 24 6 4.9760 -1.1541 4.7281 25 1 5.6685 -1.9819 4.5752 26 6 4.1204 -1.1739 5.9963 27 6 5.2789 -0.1814 5.8697 28 9 6.4231 -0.4229 6.6377 29 9 4.9578 1.1659 5.6726 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1255 1.4440 -0.0992 35 1 1.5980 1.9841 -0.8363 36 1 1.7600 1.9269 0.9354 37 1 1.6031 -1.7187 1.2967 38 1 1.7542 -0.1568 2.1368 39 1 3.6662 -1.2833 -0.9186 40 1 3.4569 -2.7080 0.1277 41 1 5.7207 -2.3213 0.9225 42 1 5.5509 -2.3698 -2.0197 43 1 5.3416 -3.7941 -0.9728 44 1 7.4151 -4.2131 -2.6430 45 1 9.6587 -5.8826 -4.4648 46 1 4.1876 -2.3580 2.5275 47 1 3.1077 -0.7768 5.9264 48 1 4.2502 -2.0145 6.6780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714919905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:17 Heat of formation + Delta-G solvation = -152.421290 kcal Electronic energy + Delta-G solvation = -30861.257742 eV Core-core repulsion = 26201.571949 eV Total energy + Delta-G solvation = -4659.685793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.85287 -47.49913 -40.29293 -38.45048 -37.78795 -35.83416 -35.45874 -34.16966 -33.66215 -31.26253 -30.28274 -27.40366 -27.31006 -25.34680 -24.86690 -23.33128 -22.87088 -21.74089 -20.65565 -19.85641 -19.28067 -18.55901 -17.92458 -17.36657 -16.77921 -16.37501 -16.08186 -15.76790 -15.62547 -15.34675 -15.02072 -14.57341 -14.40460 -14.25799 -14.12834 -14.06857 -13.74108 -13.73591 -13.57696 -13.52256 -13.29334 -12.87681 -12.70041 -12.60638 -12.32460 -11.98156 -11.91455 -11.67030 -11.55885 -11.51227 -11.33926 -11.17463 -11.05839 -10.79881 -10.65321 -10.47406 -10.41283 -10.24492 -9.98271 -9.53893 -9.23323 -8.51435 -8.13700 -7.99318 -6.44718 -3.85605 2.03328 2.55898 2.78021 3.08825 3.15820 3.24931 3.31133 3.86378 3.86974 3.96174 4.04563 4.23832 4.29962 4.54342 4.64981 4.73116 4.76801 4.89322 4.96281 5.00188 5.14726 5.19612 5.21597 5.29907 5.36340 5.42715 5.43929 5.51671 5.59993 5.67693 5.71436 5.74268 5.81005 5.90175 5.91865 5.99772 6.17240 6.22238 6.23997 6.32715 7.09461 7.22976 7.52587 7.54366 7.97812 8.03104 8.57830 9.14955 9.50793 10.02071 10.72970 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.002639 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.184172 B =10608.534474 C =13361.536219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.122 4.122 5 C 0.146 3.854 6 H 0.104 0.896 7 C 0.049 3.951 8 N -0.666 5.666 9 C 0.050 3.950 10 C 0.439 3.561 11 O -0.582 6.582 12 N -0.563 5.563 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 N -0.715 5.715 22 C 0.547 3.453 23 O -0.517 6.517 24 C -0.197 4.197 25 H 0.152 0.848 26 C -0.150 4.150 27 C 0.231 3.769 28 F -0.155 7.155 29 F -0.138 7.138 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.032 0.968 41 H 0.347 0.653 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.399 0.601 47 H 0.127 0.873 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.126 4.625 13.155 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.162 4.162 5 C 0.042 3.958 6 H 0.122 0.878 7 C -0.081 4.081 8 N -0.299 5.299 9 C -0.082 4.082 10 C 0.225 3.775 11 O -0.467 6.467 12 N -0.199 5.199 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.366 5.366 22 C 0.331 3.669 23 O -0.392 6.392 24 C -0.219 4.219 25 H 0.169 0.831 26 C -0.188 4.188 27 C 0.194 3.806 28 F -0.136 7.136 29 F -0.119 7.119 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.167 0.833 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.233 0.767 47 H 0.145 0.855 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.599 6.362 13.173 23.663 hybrid contribution 0.592 -1.813 -0.186 1.916 sum -18.006 4.549 12.987 22.663 Atomic orbital electron populations 1.21830 0.95242 1.01515 1.01731 1.21124 0.95638 0.96765 0.97950 1.21894 1.01618 0.95534 1.01697 1.22033 0.94500 1.00772 0.98847 1.21205 0.93496 0.99442 0.81656 0.87821 1.22353 0.89077 0.97866 0.98778 1.60017 1.10393 1.52475 1.07037 1.21691 0.95682 0.95056 0.95818 1.19792 0.88508 0.84092 0.85155 1.90533 1.66138 1.51576 1.38408 1.41861 1.08262 1.43147 1.26674 1.19706 0.82412 1.27841 1.12964 0.87920 1.25262 1.00585 0.96537 0.95513 1.69612 1.36539 1.32330 1.15835 0.85858 0.82166 0.78901 0.77391 1.20418 1.20892 1.19360 1.45857 1.66986 1.10370 1.13380 1.19114 0.78043 0.86431 0.83296 1.90794 1.52021 1.15177 1.81194 1.23687 1.04363 1.02969 0.90874 0.83056 1.24289 0.97111 1.00437 0.96933 1.19439 0.86504 0.78289 0.96383 1.93065 1.51048 1.93871 1.75600 1.93129 1.91922 1.31924 1.94879 0.92829 0.92651 0.92845 0.90758 0.92067 0.92874 0.92570 0.91832 0.91127 0.89239 0.94976 0.83333 0.89461 0.93864 0.77470 0.91851 0.76652 0.85507 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.10 -0.79 2.80 -90.62 -0.25 -1.05 16 3 C -0.15 -1.41 8.82 37.16 0.33 -1.08 16 4 C -0.12 -1.06 4.46 -26.73 -0.12 -1.18 16 5 C 0.15 1.53 2.23 -67.93 -0.15 1.37 16 6 H 0.10 1.38 5.86 -51.93 -0.30 1.08 16 7 C 0.05 0.53 4.97 -3.83 -0.02 0.51 16 8 N -0.67 -10.01 6.12 -115.07 -0.70 -10.72 16 9 C 0.05 0.84 6.17 -4.98 -0.03 0.80 16 10 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 11 O -0.58 -15.61 15.78 5.55 0.09 -15.52 16 12 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 13 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 14 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 15 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 16 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 17 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 21 N -0.71 -6.94 4.27 -53.81 -0.23 -7.17 16 22 C 0.55 6.36 7.59 -10.99 -0.08 6.27 16 23 O -0.52 -7.95 14.81 5.56 0.08 -7.87 16 24 C -0.20 -1.77 6.17 -91.77 -0.57 -2.34 16 25 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 26 C -0.15 -0.97 10.21 -26.69 -0.27 -1.25 16 27 C 0.23 2.47 5.19 -26.69 -0.14 2.34 16 28 F -0.16 -1.78 17.60 2.25 0.04 -1.74 16 29 F -0.14 -1.91 15.71 2.25 0.04 -1.87 16 30 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.60 6.48 -51.93 -0.34 0.27 16 34 H 0.06 0.65 6.72 -51.93 -0.35 0.30 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.93 6.72 -51.93 -0.35 0.58 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.35 5.29 7.35 -39.29 -0.29 5.00 16 42 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.40 2.97 8.30 -40.82 -0.34 2.63 16 47 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -33.98 404.93 -7.53 -41.51 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -7.29 Total: 13.16 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.29 Total: 5.82 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.27 Total: -55.49 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.98 -7.53 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714919905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.908 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds