Wall clock time and date at job start Wed Apr 1 2020 04:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47193 * 2 1 4 4 C 1.52999 * 109.47034 * 119.99899 * 2 1 3 5 5 C 1.53005 * 109.46945 * 174.83146 * 4 2 1 6 6 H 1.09005 * 109.46743 * 54.21023 * 5 4 2 7 7 C 1.52995 * 109.47398 * 294.20752 * 5 4 2 8 8 N 1.46896 * 109.47425 * 184.99746 * 7 5 4 9 9 C 1.46901 * 111.00334 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.46935 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00230 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99650 * 180.02562 * 10 9 8 13 13 C 1.37099 * 120.00088 * 179.97438 * 12 10 9 14 14 H 1.08005 * 119.99709 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00533 * 179.97438 * 13 12 10 16 16 N 1.31421 * 119.99692 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00568 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47018 * 89.99853 * 17 15 13 19 19 H 1.48495 * 109.47215 * 210.00397 * 17 15 13 20 20 H 1.48506 * 109.46957 * 329.99962 * 17 15 13 21 21 N 1.46495 * 109.47152 * 174.20214 * 5 4 2 22 22 C 1.34775 * 120.00368 * 272.05112 * 21 5 4 23 23 O 1.21279 * 120.00076 * 5.09433 * 22 21 5 24 24 C 1.50701 * 120.00056 * 185.09605 * 22 21 5 25 25 H 1.09000 * 115.54842 * 34.41863 * 24 22 21 26 26 C 1.52996 * 117.50203 * 248.74853 * 24 22 21 27 27 C 1.53002 * 117.49830 * 180.08452 * 24 22 21 28 28 F 1.39903 * 117.49821 * 214.97816 * 27 24 22 29 29 F 1.39897 * 117.49858 * 359.97438 * 27 24 22 30 30 H 1.09009 * 109.46954 * 300.00200 * 1 2 3 31 31 H 1.08997 * 109.47063 * 59.99777 * 1 2 3 32 32 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46700 * 239.99881 * 2 1 3 34 34 H 1.08997 * 109.46772 * 185.53909 * 3 2 1 35 35 H 1.08999 * 109.46907 * 305.53432 * 3 2 1 36 36 H 1.08994 * 109.47288 * 65.54152 * 3 2 1 37 37 H 1.08997 * 109.46955 * 54.83878 * 4 2 1 38 38 H 1.08994 * 109.47276 * 294.83082 * 4 2 1 39 39 H 1.09001 * 109.47370 * 64.99781 * 7 5 4 40 40 H 1.08999 * 109.47179 * 304.99642 * 7 5 4 41 41 H 1.00908 * 110.99631 * 56.04218 * 8 7 5 42 42 H 1.09002 * 109.46718 * 60.00170 * 9 8 7 43 43 H 1.08995 * 109.47068 * 300.00236 * 9 8 7 44 44 H 0.97000 * 120.00396 * 0.02562 * 12 10 9 45 45 H 0.96994 * 119.99835 * 179.97438 * 16 15 13 46 46 H 0.97009 * 119.99662 * 92.04935 * 21 5 4 47 47 H 1.09004 * 117.49532 * 359.97438 * 26 24 22 48 48 H 1.08999 * 117.50419 * 145.02264 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5645 -0.8347 1.1859 6 1 3.9965 0.1546 1.0351 7 6 3.9602 -1.7468 0.0231 8 7 5.4147 -1.9521 0.0347 9 6 5.8320 -2.8255 -1.0702 10 6 7.3266 -3.0130 -1.0254 11 8 7.9800 -2.4718 -0.1585 12 7 7.9374 -3.7812 -1.9491 13 6 9.2972 -3.9513 -1.9086 14 1 9.8789 -3.4701 -1.1363 15 6 9.9269 -4.7437 -2.8606 16 7 9.2191 -5.3297 -3.8001 17 14 11.7796 -4.9762 -2.8051 18 1 12.1053 -6.1580 -1.9671 19 1 12.2933 -5.1889 -4.1820 20 1 12.4130 -3.7662 -2.2219 21 7 4.0647 -1.3995 2.4417 22 6 4.3541 -0.5876 3.4778 23 8 4.1140 0.5989 3.4039 24 6 4.9760 -1.1541 4.7281 25 1 5.6685 -1.9819 4.5752 26 6 4.1204 -1.1739 5.9963 27 6 5.2789 -0.1814 5.8697 28 9 6.4231 -0.4229 6.6377 29 9 4.9578 1.1659 5.6726 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1255 1.4440 -0.0992 35 1 1.5980 1.9841 -0.8363 36 1 1.7600 1.9269 0.9354 37 1 1.6031 -1.7187 1.2967 38 1 1.7542 -0.1568 2.1368 39 1 3.6662 -1.2833 -0.9186 40 1 3.4569 -2.7080 0.1277 41 1 5.7207 -2.3213 0.9225 42 1 5.5509 -2.3698 -2.0197 43 1 5.3416 -3.7941 -0.9728 44 1 7.4151 -4.2131 -2.6430 45 1 9.6587 -5.8826 -4.4648 46 1 4.1876 -2.3580 2.5275 47 1 3.1077 -0.7768 5.9264 48 1 4.2502 -2.0145 6.6780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714919905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:16 Heat of formation + Delta-G solvation = -177.279154 kcal Electronic energy + Delta-G solvation = -30862.335660 eV Core-core repulsion = 26201.571949 eV Total energy + Delta-G solvation = -4660.763711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.69935 -48.38401 -41.18763 -40.13523 -38.76900 -36.58227 -36.52448 -35.86174 -34.91101 -33.25569 -31.21209 -28.70372 -28.00555 -26.64625 -25.94829 -24.59520 -23.58901 -22.54477 -21.52635 -21.10257 -20.53144 -19.91129 -19.38794 -18.28138 -17.77860 -17.58866 -17.10156 -16.87370 -16.59806 -16.51948 -16.30617 -15.89856 -15.84437 -15.25227 -15.10625 -15.06230 -15.01798 -14.69998 -14.53169 -14.44819 -14.33058 -14.09083 -13.56764 -13.47648 -13.46619 -13.14474 -13.09677 -12.96223 -12.75058 -12.68071 -12.42005 -12.29210 -12.16369 -12.12079 -11.90773 -11.53164 -11.50512 -11.39444 -11.21993 -10.86180 -10.36551 -10.06731 -10.01106 -9.31289 -8.47002 -5.95354 1.20926 1.37463 1.41819 1.54098 1.81364 2.05639 2.05982 2.28446 2.30391 2.88234 3.20730 3.21052 3.31367 3.50370 3.53735 3.78743 3.90631 4.00614 4.07254 4.14302 4.23590 4.34752 4.44561 4.47833 4.53181 4.57345 4.61792 4.68890 4.76420 4.78883 4.84851 4.86192 4.96798 5.03422 5.10567 5.15242 5.35524 5.41021 5.45979 5.48529 5.55475 5.87116 6.09127 6.38987 6.44338 6.60490 7.13117 7.14856 7.57000 8.12617 8.70306 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.002639 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.184172 B =10608.534474 C =13361.536219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.111 4.111 5 C 0.150 3.850 6 H 0.069 0.931 7 C 0.055 3.945 8 N -0.687 5.687 9 C 0.066 3.934 10 C 0.436 3.564 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.334 4.334 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.275 1.275 21 N -0.704 5.704 22 C 0.540 3.460 23 O -0.563 6.563 24 C -0.198 4.198 25 H 0.172 0.828 26 C -0.103 4.103 27 C 0.189 3.811 28 F -0.165 7.165 29 F -0.166 7.166 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.344 0.656 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.413 0.587 47 H 0.135 0.865 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.770 2.489 12.993 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.150 4.150 5 C 0.045 3.955 6 H 0.088 0.912 7 C -0.074 4.074 8 N -0.320 5.320 9 C -0.066 4.066 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.210 5.210 13 C -0.463 4.463 14 H 0.095 0.905 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.814 3.186 18 H -0.195 1.195 19 H -0.196 1.196 20 H -0.200 1.200 21 N -0.355 5.355 22 C 0.326 3.674 23 O -0.441 6.441 24 C -0.220 4.220 25 H 0.189 0.811 26 C -0.141 4.141 27 C 0.152 3.848 28 F -0.146 7.146 29 F -0.146 7.146 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.163 0.837 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.250 0.750 47 H 0.154 0.846 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.278 4.183 12.990 24.442 hybrid contribution 1.083 -1.098 -0.133 1.548 sum -19.195 3.085 12.857 23.308 Atomic orbital electron populations 1.21800 0.94075 1.02316 1.01804 1.21137 0.96551 0.95654 0.97995 1.21873 1.00478 0.96844 1.01412 1.21927 0.92887 1.01743 0.98419 1.21097 0.94618 0.97836 0.81947 0.91238 1.22400 0.86599 0.99256 0.99112 1.59974 1.13310 1.52350 1.06397 1.21543 0.90628 0.97223 0.97250 1.20957 0.91229 0.82036 0.83436 1.90504 1.68062 1.52761 1.39824 1.41922 1.07577 1.43982 1.27484 1.19638 0.83945 1.29304 1.13440 0.90523 1.25989 1.04594 0.95716 0.94789 1.69663 1.38031 1.32312 1.16005 0.84971 0.77123 0.78615 0.77912 1.19469 1.19570 1.20046 1.45782 1.66093 1.10974 1.12669 1.19588 0.77553 0.85999 0.84291 1.90778 1.54038 1.17172 1.82151 1.23755 1.05502 1.02566 0.90192 0.81060 1.24482 0.95761 0.98977 0.94839 1.20068 0.88444 0.77818 0.98513 1.93032 1.51887 1.93781 1.75856 1.93060 1.92178 1.34157 1.95215 0.93197 0.92219 0.91640 0.89978 0.93911 0.92009 0.93743 0.89628 0.92598 0.88540 0.91962 0.83678 0.87787 0.90746 0.76893 0.91287 0.75011 0.84641 0.81176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 71.98 0.66 -1.09 16 2 C -0.09 -1.41 2.80 -10.79 -0.03 -1.44 16 3 C -0.15 -2.80 8.82 71.98 0.63 -2.17 16 4 C -0.11 -1.73 4.46 30.60 0.14 -1.59 16 5 C 0.15 2.98 2.23 44.99 0.10 3.08 16 6 H 0.07 1.91 5.86 -2.38 -0.01 1.90 16 7 C 0.06 1.05 4.97 86.30 0.43 1.48 16 8 N -0.69 -19.58 6.12 -517.96 -3.17 -22.75 16 9 C 0.07 2.05 6.17 85.56 0.53 2.58 16 10 C 0.44 20.04 7.82 87.66 0.69 20.72 16 11 O -0.62 -34.11 15.78 -3.06 -0.05 -34.16 16 12 N -0.57 -28.60 5.29 -306.98 -1.62 -30.23 16 13 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 14 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 15 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 16 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 17 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 N -0.70 -12.85 4.27 -442.54 -1.89 -14.74 16 22 C 0.54 12.50 7.59 87.66 0.67 13.16 16 23 O -0.56 -18.11 14.81 -3.03 -0.04 -18.15 16 24 C -0.20 -3.36 6.17 -11.54 -0.07 -3.43 16 25 H 0.17 2.14 8.14 -2.39 -0.02 2.12 16 26 C -0.10 -1.10 10.21 30.62 0.31 -0.78 16 27 C 0.19 4.03 5.19 30.62 0.16 4.19 16 28 F -0.17 -3.80 17.60 44.97 0.79 -3.01 16 29 F -0.17 -4.84 15.71 44.97 0.71 -4.13 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.12 6.48 -2.39 -0.02 1.11 16 34 H 0.04 0.95 6.72 -2.39 -0.02 0.93 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.74 6.72 -2.39 -0.02 1.72 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.34 10.06 7.35 -89.69 -0.66 9.40 16 42 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 45 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 46 H 0.41 5.19 8.30 -92.70 -0.77 4.42 16 47 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.17 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -77.39 404.93 1.38 -76.01 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -1.15 Total: 38.37 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.49 Total: 16.66 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -6.40 Total: -116.22 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -0.09 Total: -52.31 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 1.50 Total: -7.14 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -77.39 1.38 -76.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714919905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.272 kcal (2) G-P(sol) polarization free energy of solvation -77.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds