Wall clock time and date at job start Wed Apr 1 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46773 * 2 1 4 4 C 1.52996 * 109.46940 * 119.99765 * 2 1 3 5 5 H 1.08997 * 109.47363 * 299.99968 * 4 2 1 6 6 C 1.52998 * 109.47022 * 60.00506 * 4 2 1 7 7 C 1.53002 * 109.46943 * 184.99945 * 6 4 2 8 8 N 1.46507 * 109.46885 * 180.02562 * 7 6 4 9 9 C 1.34773 * 119.99777 * 179.97438 * 8 7 6 10 10 O 1.21648 * 120.00127 * 359.97438 * 9 8 7 11 11 C 1.47205 * 120.00034 * 179.97438 * 9 8 7 12 12 C 1.38840 * 120.90029 * 359.97438 * 11 9 8 13 13 C 1.39930 * 119.43192 * 180.02562 * 12 11 9 14 14 C 1.35016 * 121.27269 * 359.94006 * 13 12 11 15 15 N 1.36265 * 121.57676 * 0.03814 * 14 13 12 16 16 C 1.36369 * 133.87803 * 180.02562 * 15 14 13 17 17 O 1.35711 * 126.33239 * 0.02562 * 16 15 14 18 18 N 1.31100 * 107.33436 * 179.97438 * 16 15 14 19 19 N 1.28699 * 110.30847 * 0.02562 * 18 16 15 20 20 C 1.31486 * 109.67057 * 359.97438 * 19 18 16 21 21 N 1.46504 * 109.46978 * 180.02562 * 4 2 1 22 22 C 1.36940 * 120.00198 * 85.00168 * 21 4 2 23 23 H 1.07995 * 119.99959 * 0.02562 * 22 21 4 24 24 C 1.38808 * 119.99953 * 179.97438 * 22 21 4 25 25 N 1.31627 * 120.00026 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00111 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46859 * 60.00214 * 26 24 22 28 28 H 1.48500 * 109.47198 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47184 * 300.00688 * 26 24 22 30 30 H 1.08997 * 109.47067 * 300.00085 * 1 2 3 31 31 H 1.08996 * 109.47224 * 59.99820 * 1 2 3 32 32 H 1.08992 * 109.47150 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47132 * 240.00467 * 2 1 3 34 34 H 1.09001 * 109.46515 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47393 * 300.00077 * 3 2 1 36 36 H 1.08997 * 109.46910 * 60.00332 * 3 2 1 37 37 H 1.08998 * 109.47460 * 65.00069 * 6 4 2 38 38 H 1.09003 * 109.47252 * 304.99430 * 6 4 2 39 39 H 1.08994 * 109.47787 * 59.99494 * 7 6 4 40 40 H 1.09002 * 109.47149 * 299.99477 * 7 6 4 41 41 H 0.97000 * 119.99980 * 359.97438 * 8 7 6 42 42 H 1.08004 * 120.28479 * 0.02604 * 12 11 9 43 43 H 1.07999 * 119.36621 * 179.97438 * 13 12 11 44 44 H 1.07994 * 119.21557 * 180.31327 * 14 13 12 45 45 H 0.96700 * 114.00280 * 90.00170 * 17 16 15 46 46 H 0.97002 * 119.99624 * 264.99947 * 21 4 2 47 47 H 0.97001 * 119.99547 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1637 1.2492 7 6 1.9348 -2.8477 2.5566 8 7 1.4470 -4.2292 2.5563 9 6 1.6880 -5.0291 3.6139 10 8 2.3109 -4.6042 4.5685 11 6 1.1974 -6.4170 3.6139 12 6 0.4842 -6.9211 2.5346 13 6 0.0319 -8.2449 2.5673 14 6 0.2766 -9.0432 3.6283 15 7 0.9720 -8.5967 4.7118 16 6 1.3555 -9.1673 5.8895 17 8 1.1037 -10.4406 6.2856 18 7 2.0135 -8.2586 6.5678 19 7 2.0707 -7.1587 5.9020 20 6 1.4486 -7.3040 4.7528 21 7 3.5050 -0.7207 1.2496 22 6 4.1893 0.3543 1.7511 23 1 3.6489 1.2016 2.1467 24 6 5.5773 0.3545 1.7518 25 7 6.2359 -0.6783 1.2701 26 14 6.5107 1.8212 2.4352 27 1 6.1512 2.0151 3.8629 28 1 7.9708 1.5757 2.3209 29 1 6.1521 3.0389 1.6647 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.9647 -2.7027 0.4075 38 1 0.4437 -2.1651 1.1597 39 1 1.5002 -2.3087 3.3984 40 1 3.0211 -2.8464 2.6462 41 1 0.9507 -4.5681 1.7949 42 1 0.2802 -6.2969 1.6771 43 1 -0.5232 -8.6358 1.7274 44 1 -0.0837 -10.0612 3.6163 45 1 1.7853 -11.0755 6.0260 46 1 3.9903 -1.4818 0.8946 47 1 7.2059 -0.6782 1.2710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717722283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:25 Heat of formation + Delta-G solvation = 52.199585 kcal Electronic energy + Delta-G solvation = -29885.289927 eV Core-core repulsion = 25685.166348 eV Total energy + Delta-G solvation = -4200.123580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.85621 -39.78856 -38.36591 -38.08733 -37.43673 -34.78608 -34.07033 -33.03235 -31.64477 -31.08942 -29.73042 -29.03078 -26.45723 -25.78091 -24.83638 -23.81721 -23.30481 -22.73121 -21.21422 -21.07772 -19.61154 -19.17436 -18.47716 -17.71296 -17.52745 -17.07409 -16.86200 -15.92964 -15.53652 -15.40377 -15.15375 -14.79337 -14.43227 -13.95572 -13.77879 -13.60961 -13.36809 -13.16929 -13.07190 -12.99625 -12.73355 -12.68004 -12.05547 -12.00771 -11.73513 -11.62560 -11.38003 -11.19081 -10.87453 -10.75484 -10.73277 -10.59665 -10.43658 -10.26268 -10.05102 -10.01407 -10.00724 -9.75113 -9.42725 -8.92075 -8.78902 -8.52159 -6.90483 -5.71655 -2.99282 -0.24953 0.55562 1.40795 2.14062 2.42560 3.02542 3.20866 3.33758 3.48608 3.54123 3.54419 3.57131 3.81637 4.11140 4.24015 4.47746 4.64145 4.88085 4.99030 5.18744 5.25073 5.29766 5.36003 5.39891 5.48140 5.55164 5.62136 5.70122 5.72172 5.90389 6.00509 6.05313 6.16787 6.22980 6.26969 6.39175 6.40171 6.52867 6.65229 6.69864 6.71845 6.77556 6.83356 7.12994 7.34635 7.51732 7.76245 8.16695 8.25707 8.46630 9.58193 10.14242 10.48820 11.50762 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.002335 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.829783 B =11990.173702 C =13556.501222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.185 3.815 5 H 0.050 0.950 6 C -0.136 4.136 7 C 0.123 3.877 8 N -0.721 5.721 9 C 0.552 3.448 10 O -0.494 6.494 11 C -0.074 4.074 12 C -0.048 4.048 13 C -0.143 4.143 14 C 0.088 3.912 15 N -0.408 5.408 16 C 0.313 3.687 17 O -0.428 6.428 18 N -0.238 5.238 19 N -0.234 5.234 20 C 0.231 3.769 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.071 0.929 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.393 0.607 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.172 0.828 45 H 0.405 0.595 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.983 -20.039 -3.229 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.074 3.926 5 H 0.068 0.932 6 C -0.174 4.174 7 C 0.001 3.999 8 N -0.373 5.373 9 C 0.336 3.664 10 O -0.368 6.368 11 C -0.081 4.081 12 C -0.073 4.073 13 C -0.165 4.165 14 C -0.035 4.035 15 N -0.101 5.101 16 C 0.014 3.986 17 O -0.226 6.226 18 N -0.087 5.087 19 N -0.079 5.079 20 C -0.021 4.021 21 N -0.362 5.362 22 C -0.363 4.363 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.227 0.773 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.190 0.810 45 H 0.262 0.738 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.089 -18.889 -0.798 25.485 hybrid contribution 0.058 -0.753 -1.452 1.636 sum -17.031 -19.643 -2.250 26.095 Atomic orbital electron populations 1.21937 0.97177 1.00570 1.00765 1.21777 0.93228 0.97759 1.00467 1.21834 1.04313 0.94840 0.98814 1.20182 0.86084 0.90995 0.95301 0.93230 1.22140 1.00489 0.98357 0.96452 1.21531 1.01543 0.78446 0.98383 1.45951 1.57879 1.14057 1.19425 1.17442 0.81219 0.83919 0.83846 1.90968 1.37880 1.74461 1.33483 1.20318 1.02342 0.94332 0.91157 1.21842 0.93065 0.95502 0.96866 1.20798 1.03094 0.93841 0.98730 1.21745 0.95070 1.01150 0.85505 1.44099 1.38304 1.13397 1.14320 1.21823 1.03290 0.89821 0.83715 1.85015 1.49597 1.11754 1.76282 1.74773 1.13792 0.96735 1.23443 1.75096 1.17853 1.14247 1.00739 1.22619 0.99213 0.83009 0.97228 1.42429 0.98870 1.21104 1.73753 1.19133 0.88775 0.96258 1.32177 0.91089 1.24703 0.96497 0.97693 1.01940 1.69639 1.06848 1.29886 1.51639 0.86355 0.79115 0.82312 0.78961 1.21246 1.21840 1.21379 0.93261 0.93866 0.93242 0.92222 0.89459 0.95255 0.94113 0.91591 0.91487 0.91446 0.89343 0.77250 0.82609 0.81853 0.81036 0.73792 0.78314 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.85 37.16 0.33 -1.55 16 2 C -0.11 -1.80 2.69 -90.62 -0.24 -2.05 16 3 C -0.14 -2.53 8.26 37.16 0.31 -2.22 16 4 C 0.19 3.31 2.02 -67.93 -0.14 3.17 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C -0.14 -1.89 4.65 -26.73 -0.12 -2.01 16 7 C 0.12 1.93 5.56 -4.04 -0.02 1.91 16 8 N -0.72 -8.89 5.51 -61.45 -0.34 -9.22 16 9 C 0.55 8.34 7.77 -12.62 -0.10 8.24 16 10 O -0.49 -10.19 16.28 5.24 0.09 -10.10 16 11 C -0.07 -0.87 6.06 -102.69 -0.62 -1.49 16 12 C -0.05 -0.30 9.63 -38.73 -0.37 -0.67 16 13 C -0.14 -0.56 9.91 -40.09 -0.40 -0.96 16 14 C 0.09 0.47 10.94 -16.73 -0.18 0.29 16 15 N -0.41 -4.15 2.97 -62.51 -0.19 -4.34 16 16 C 0.31 3.54 9.41 -88.65 -0.83 2.71 16 17 O -0.43 -3.13 13.65 -18.84 -0.26 -3.38 16 18 N -0.24 -3.70 12.20 29.70 0.36 -3.34 16 19 N -0.23 -4.10 11.76 32.37 0.38 -3.72 16 20 C 0.23 3.24 7.75 -153.91 -1.19 2.05 16 21 N -0.72 -16.62 4.45 -53.43 -0.24 -16.85 16 22 C -0.23 -6.10 7.57 -15.06 -0.11 -6.21 16 23 H 0.07 1.83 7.40 -52.49 -0.39 1.44 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 26 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.54 6.32 -51.93 -0.33 0.22 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.88 6.01 -51.93 -0.31 1.57 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.75 6.18 -51.93 -0.32 0.43 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.76 7.75 -51.93 -0.40 1.36 16 41 H 0.39 3.14 6.57 -40.82 -0.27 2.87 16 42 H 0.16 0.46 6.48 -52.48 -0.34 0.12 16 43 H 0.16 0.00 8.06 -52.49 -0.42 -0.43 16 44 H 0.17 0.27 8.06 -52.49 -0.42 -0.15 16 45 H 0.40 0.70 9.06 45.56 0.41 1.11 16 46 H 0.38 9.54 7.80 -40.82 -0.32 9.22 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -38.38 390.38 -8.04 -46.41 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.62 Total: 7.49 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.80 Total: 0.75 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 0.71 Total: -64.47 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.17 Total: -13.48 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.38 -8.04 -46.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717722283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.610 kcal (2) G-P(sol) polarization free energy of solvation -38.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds