Wall clock time and date at job start Wed Apr 1 2020 04:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46773 * 2 1 4 4 C 1.52996 * 109.46940 * 119.99765 * 2 1 3 5 5 H 1.08997 * 109.47363 * 299.99968 * 4 2 1 6 6 C 1.52998 * 109.47022 * 60.00506 * 4 2 1 7 7 C 1.53002 * 109.46943 * 184.99945 * 6 4 2 8 8 N 1.46507 * 109.46885 * 180.02562 * 7 6 4 9 9 C 1.34773 * 119.99777 * 179.97438 * 8 7 6 10 10 O 1.21648 * 120.00127 * 359.97438 * 9 8 7 11 11 C 1.47205 * 120.00034 * 179.97438 * 9 8 7 12 12 C 1.38840 * 120.90029 * 359.97438 * 11 9 8 13 13 C 1.39930 * 119.43192 * 180.02562 * 12 11 9 14 14 C 1.35016 * 121.27269 * 359.94006 * 13 12 11 15 15 N 1.36265 * 121.57676 * 0.03814 * 14 13 12 16 16 C 1.36369 * 133.87803 * 180.02562 * 15 14 13 17 17 O 1.35711 * 126.33239 * 0.02562 * 16 15 14 18 18 N 1.31100 * 107.33436 * 179.97438 * 16 15 14 19 19 N 1.28699 * 110.30847 * 0.02562 * 18 16 15 20 20 C 1.31486 * 109.67057 * 359.97438 * 19 18 16 21 21 N 1.46504 * 109.46978 * 180.02562 * 4 2 1 22 22 C 1.36940 * 120.00198 * 85.00168 * 21 4 2 23 23 H 1.07995 * 119.99959 * 0.02562 * 22 21 4 24 24 C 1.38808 * 119.99953 * 179.97438 * 22 21 4 25 25 N 1.31627 * 120.00026 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00111 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46859 * 60.00214 * 26 24 22 28 28 H 1.48500 * 109.47198 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47184 * 300.00688 * 26 24 22 30 30 H 1.08997 * 109.47067 * 300.00085 * 1 2 3 31 31 H 1.08996 * 109.47224 * 59.99820 * 1 2 3 32 32 H 1.08992 * 109.47150 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47132 * 240.00467 * 2 1 3 34 34 H 1.09001 * 109.46515 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47393 * 300.00077 * 3 2 1 36 36 H 1.08997 * 109.46910 * 60.00332 * 3 2 1 37 37 H 1.08998 * 109.47460 * 65.00069 * 6 4 2 38 38 H 1.09003 * 109.47252 * 304.99430 * 6 4 2 39 39 H 1.08994 * 109.47787 * 59.99494 * 7 6 4 40 40 H 1.09002 * 109.47149 * 299.99477 * 7 6 4 41 41 H 0.97000 * 119.99980 * 359.97438 * 8 7 6 42 42 H 1.08004 * 120.28479 * 0.02604 * 12 11 9 43 43 H 1.07999 * 119.36621 * 179.97438 * 13 12 11 44 44 H 1.07994 * 119.21557 * 180.31327 * 14 13 12 45 45 H 0.96700 * 114.00280 * 90.00170 * 17 16 15 46 46 H 0.97002 * 119.99624 * 264.99947 * 21 4 2 47 47 H 0.97001 * 119.99547 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1637 1.2492 7 6 1.9348 -2.8477 2.5566 8 7 1.4470 -4.2292 2.5563 9 6 1.6880 -5.0291 3.6139 10 8 2.3109 -4.6042 4.5685 11 6 1.1974 -6.4170 3.6139 12 6 0.4842 -6.9211 2.5346 13 6 0.0319 -8.2449 2.5673 14 6 0.2766 -9.0432 3.6283 15 7 0.9720 -8.5967 4.7118 16 6 1.3555 -9.1673 5.8895 17 8 1.1037 -10.4406 6.2856 18 7 2.0135 -8.2586 6.5678 19 7 2.0707 -7.1587 5.9020 20 6 1.4486 -7.3040 4.7528 21 7 3.5050 -0.7207 1.2496 22 6 4.1893 0.3543 1.7511 23 1 3.6489 1.2016 2.1467 24 6 5.5773 0.3545 1.7518 25 7 6.2359 -0.6783 1.2701 26 14 6.5107 1.8212 2.4352 27 1 6.1512 2.0151 3.8629 28 1 7.9708 1.5757 2.3209 29 1 6.1521 3.0389 1.6647 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.9647 -2.7027 0.4075 38 1 0.4437 -2.1651 1.1597 39 1 1.5002 -2.3087 3.3984 40 1 3.0211 -2.8464 2.6462 41 1 0.9507 -4.5681 1.7949 42 1 0.2802 -6.2969 1.6771 43 1 -0.5232 -8.6358 1.7274 44 1 -0.0837 -10.0612 3.6163 45 1 1.7853 -11.0755 6.0260 46 1 3.9903 -1.4818 0.8946 47 1 7.2059 -0.6782 1.2710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717722283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:24 Heat of formation + Delta-G solvation = 19.224370 kcal Electronic energy + Delta-G solvation = -29886.719840 eV Core-core repulsion = 25685.166348 eV Total energy + Delta-G solvation = -4201.553492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.66332 -40.86539 -39.15228 -38.82825 -38.74784 -36.05630 -34.91381 -34.80541 -32.69403 -32.19136 -31.24441 -30.01981 -27.70420 -27.03407 -25.92033 -24.84026 -24.44721 -23.89875 -22.46698 -22.08008 -20.67895 -20.29055 -19.28062 -19.05351 -18.42872 -18.33929 -17.67707 -16.93976 -16.66123 -16.42900 -16.27862 -15.83622 -15.63894 -15.45301 -15.25422 -14.99182 -14.55490 -14.34065 -14.02783 -13.73863 -13.71111 -13.47954 -13.27401 -13.15848 -12.91910 -12.86240 -12.82498 -12.63206 -12.44840 -12.17377 -12.12577 -12.00664 -11.85179 -11.67797 -11.57062 -11.35315 -11.16498 -11.02412 -10.75532 -10.73697 -10.13655 -9.26306 -8.86889 -7.86696 -5.10213 -0.87206 -0.09724 0.68658 1.38993 1.46102 1.49005 1.53336 1.57611 2.03650 2.41936 2.53265 2.60618 2.98194 3.16022 3.46855 3.54908 3.73205 3.78807 3.96812 3.99890 4.19362 4.30994 4.34517 4.42544 4.48148 4.58897 4.67829 4.73732 4.74582 4.85904 4.86094 4.88233 5.02043 5.08860 5.14771 5.19877 5.29983 5.31456 5.40631 5.47399 5.50486 5.57411 5.60529 5.76396 5.85097 6.28738 6.36649 6.55113 7.24697 7.29770 7.43334 8.21976 8.42510 9.36846 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.002335 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.829783 B =11990.173702 C =13556.501222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.176 3.824 5 H 0.036 0.964 6 C -0.118 4.118 7 C 0.134 3.866 8 N -0.699 5.699 9 C 0.550 3.450 10 O -0.571 6.571 11 C -0.139 4.139 12 C 0.010 3.990 13 C -0.135 4.135 14 C 0.093 3.907 15 N -0.406 5.406 16 C 0.329 3.671 17 O -0.420 6.420 18 N -0.293 5.293 19 N -0.315 5.315 20 C 0.223 3.777 21 N -0.730 5.730 22 C -0.209 4.209 23 H 0.073 0.927 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.954 3.046 27 H -0.287 1.287 28 H -0.301 1.301 29 H -0.276 1.276 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.419 0.581 42 H 0.199 0.801 43 H 0.224 0.776 44 H 0.220 0.780 45 H 0.430 0.570 46 H 0.372 0.628 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.694 -22.555 -6.760 32.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.197 4.197 4 C 0.067 3.933 5 H 0.054 0.946 6 C -0.156 4.156 7 C 0.010 3.990 8 N -0.352 5.352 9 C 0.337 3.663 10 O -0.450 6.450 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.155 4.155 14 C -0.028 4.028 15 N -0.099 5.099 16 C 0.027 3.973 17 O -0.223 6.223 18 N -0.141 5.141 19 N -0.160 5.160 20 C -0.031 4.031 21 N -0.369 5.369 22 C -0.342 4.342 23 H 0.091 0.909 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.785 3.215 27 H -0.214 1.214 28 H -0.228 1.228 29 H -0.203 1.203 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.258 0.742 42 H 0.216 0.784 43 H 0.241 0.759 44 H 0.236 0.764 45 H 0.292 0.708 46 H 0.204 0.796 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.877 -21.422 -4.373 30.929 hybrid contribution 1.280 -0.161 -0.484 1.378 sum -20.597 -21.583 -4.857 30.227 Atomic orbital electron populations 1.21857 0.93521 1.02673 1.01568 1.21627 0.96147 0.95960 0.98783 1.21779 1.01495 0.96643 0.99804 1.20482 0.83067 0.93982 0.95749 0.94568 1.22008 1.02982 0.95222 0.95371 1.21137 0.98320 0.80476 0.99019 1.45579 1.57388 1.12453 1.19813 1.18066 0.79796 0.85469 0.82962 1.90924 1.41509 1.76229 1.36335 1.19965 1.08383 0.92715 0.93576 1.22534 0.87186 0.96770 0.94908 1.21541 1.02170 0.92133 0.99687 1.22908 0.92534 1.03485 0.83830 1.44212 1.38606 1.11959 1.15143 1.21732 1.01523 0.90485 0.83593 1.84993 1.50642 1.10370 1.76300 1.74543 1.16538 0.97616 1.25391 1.74923 1.21637 1.15949 1.03456 1.22901 0.98594 0.84758 0.96841 1.42609 1.01271 1.19739 1.73325 1.19429 0.88905 0.96534 1.29314 0.90918 1.25347 0.97689 1.00030 1.04084 1.69780 1.06187 1.31763 1.54476 0.85484 0.77451 0.80306 0.78285 1.21355 1.22778 1.20270 0.93154 0.92445 0.90499 0.92468 0.93710 0.93116 0.94283 0.90333 0.86998 0.93311 0.94636 0.74220 0.78437 0.75916 0.76355 0.70779 0.79621 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.85 71.98 0.64 -2.30 16 2 C -0.10 -3.16 2.69 -10.79 -0.03 -3.19 16 3 C -0.14 -4.88 8.26 71.98 0.59 -4.29 16 4 C 0.18 6.17 2.02 44.99 0.09 6.26 16 5 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 6 C -0.12 -3.02 4.65 30.59 0.14 -2.87 16 7 C 0.13 4.31 5.56 86.38 0.48 4.79 16 8 N -0.70 -16.68 5.51 -466.55 -2.57 -19.25 16 9 C 0.55 17.40 7.77 86.60 0.67 18.08 16 10 O -0.57 -26.13 16.28 -4.18 -0.07 -26.19 16 11 C -0.14 -3.17 6.06 -18.61 -0.11 -3.28 16 12 C 0.01 0.08 9.63 22.82 0.22 0.30 16 13 C -0.13 -0.12 9.91 21.94 0.22 0.10 16 14 C 0.09 0.51 10.94 83.26 0.91 1.42 16 15 N -0.41 -7.61 2.97 -462.37 -1.37 -8.98 16 16 C 0.33 7.39 9.41 179.66 1.69 9.08 16 17 O -0.42 -5.37 13.65 -90.32 -1.23 -6.61 16 18 N -0.29 -9.90 12.20 -173.36 -2.12 -12.02 16 19 N -0.32 -12.21 11.76 -51.51 -0.61 -12.81 16 20 C 0.22 6.47 7.75 135.68 1.05 7.52 16 21 N -0.73 -34.67 4.45 -322.95 -1.44 -36.11 16 22 C -0.21 -11.37 7.57 84.03 0.64 -10.74 16 23 H 0.07 3.85 7.40 -2.91 -0.02 3.83 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 25 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 26 Si 0.95 47.95 29.55 68.60 2.03 49.98 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 29 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.22 6.32 -2.39 -0.02 1.21 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.94 6.01 -2.39 -0.01 1.92 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.11 1.93 6.18 -2.39 -0.01 1.91 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.53 7.75 -2.39 -0.02 1.51 16 41 H 0.42 5.10 6.57 -92.71 -0.61 4.49 16 42 H 0.20 -0.30 6.48 -2.91 -0.02 -0.32 16 43 H 0.22 -2.26 8.06 -2.91 -0.02 -2.28 16 44 H 0.22 -0.90 8.06 -2.91 -0.02 -0.92 16 45 H 0.43 0.47 9.06 -74.06 -0.67 -0.20 16 46 H 0.37 19.26 7.80 -92.71 -0.72 18.54 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -100.22 390.38 -0.38 -100.60 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.96 Total: 14.90 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 7.67 Total: 16.69 kcal Atomic # 7 Polarization: -141.55 SS G_CDS: -7.82 Total: -149.37 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.30 Total: -32.80 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -100.22 -0.38 -100.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717722283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.823 kcal (2) G-P(sol) polarization free energy of solvation -100.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds