Wall clock time and date at job start Wed Apr 1 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39898 * 109.46820 * 2 1 4 4 F 1.39896 * 109.46854 * 240.00215 * 2 1 3 5 5 C 1.52999 * 109.46852 * 119.99945 * 2 1 3 6 6 C 1.50701 * 109.46910 * 180.02562 * 5 2 1 7 7 O 1.21280 * 119.99718 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99755 * 180.02562 * 6 5 2 9 9 C 1.47022 * 125.65036 * 0.02562 * 8 6 5 10 10 C 1.54319 * 107.27131 * 178.89875 * 9 8 6 11 11 C 1.55162 * 102.94162 * 337.80675 * 10 9 8 12 12 H 1.08998 * 111.00838 * 277.38526 * 11 10 9 13 13 C 1.53007 * 111.00335 * 153.57819 * 11 10 9 14 14 C 1.52995 * 109.47182 * 66.45212 * 13 11 10 15 15 N 1.46906 * 109.46978 * 180.02562 * 14 13 11 16 16 C 1.46901 * 110.99793 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46921 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47117 * 59.99412 * 24 22 20 26 26 H 1.48498 * 109.47600 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46756 * 300.00019 * 24 22 20 28 28 C 1.47421 * 125.64580 * 179.97438 * 8 6 5 29 29 H 1.09000 * 109.46924 * 300.00334 * 1 2 3 30 30 H 1.08999 * 109.47060 * 59.99666 * 1 2 3 31 31 H 1.08991 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47234 * 59.99589 * 5 2 1 33 33 H 1.09005 * 109.47218 * 300.00063 * 5 2 1 34 34 H 1.08997 * 109.88286 * 59.48165 * 9 8 6 35 35 H 1.08999 * 110.01257 * 298.38930 * 9 8 6 36 36 H 1.09000 * 110.72195 * 219.44931 * 10 9 8 37 37 H 1.08996 * 110.72469 * 96.16756 * 10 9 8 38 38 H 1.09005 * 109.46845 * 306.45666 * 13 11 10 39 39 H 1.09002 * 109.46933 * 186.45766 * 13 11 10 40 40 H 1.08995 * 109.46859 * 60.00453 * 14 13 11 41 41 H 1.09002 * 109.47639 * 300.00121 * 14 13 11 42 42 H 1.00899 * 110.99995 * 56.04730 * 15 14 13 43 43 H 1.09002 * 109.47401 * 59.99808 * 16 15 14 44 44 H 1.09001 * 109.46874 * 299.99821 * 16 15 14 45 45 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 47 47 H 1.09001 * 110.37023 * 85.32979 * 28 8 6 48 48 H 1.09007 * 110.36664 * 323.00784 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7207 1.2496 7 8 4.1533 -0.1956 0.3399 8 7 4.2208 -1.3047 2.2602 9 6 3.6146 -1.9757 3.4194 10 6 4.7679 -2.5126 4.2929 11 6 5.9481 -2.6078 3.2901 12 1 5.8991 -3.5328 2.7156 13 6 7.2919 -2.4843 4.0112 14 6 7.4975 -3.6991 4.9181 15 7 8.7875 -3.5802 5.6110 16 6 9.0198 -4.7322 6.4924 17 6 10.3496 -4.5755 7.1838 18 8 11.0360 -3.5998 6.9643 19 7 10.7757 -5.5190 8.0469 20 6 11.9852 -5.3761 8.6764 21 1 12.5968 -4.5078 8.4802 22 6 12.4247 -6.3489 9.5657 23 7 11.6808 -7.4058 9.8039 24 14 14.0724 -6.1541 10.4239 25 1 14.0661 -4.9072 11.2304 26 1 14.3072 -7.3184 11.3152 27 1 15.1537 -6.0813 9.4086 28 6 5.6879 -1.3772 2.3859 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1393 34 1 2.9882 -2.8021 3.0836 35 1 3.0164 -1.2658 3.9906 36 1 4.5225 -3.4960 4.6939 37 1 5.0004 -1.8142 5.0967 38 1 7.2987 -1.5758 4.6137 39 1 8.0957 -2.4390 3.2764 40 1 7.4907 -4.6075 4.3157 41 1 6.6937 -3.7444 5.6529 42 1 8.8431 -2.7139 6.1253 43 1 9.0240 -5.6475 5.9006 44 1 8.2263 -4.7852 7.2378 45 1 10.2266 -6.2989 8.2227 46 1 11.9875 -8.0847 10.4251 47 1 6.0736 -0.4726 2.8561 48 1 6.1458 -1.5219 1.4073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724727114.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:01 Heat of formation + Delta-G solvation = -181.552686 kcal Electronic energy + Delta-G solvation = -29528.451235 eV Core-core repulsion = 24867.502210 eV Total energy + Delta-G solvation = -4660.949025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.24528 -47.22943 -40.49789 -38.45795 -38.08315 -35.86950 -34.01561 -33.82162 -32.96827 -31.23007 -30.23198 -29.68378 -28.20719 -26.03616 -24.21643 -23.50495 -22.57561 -22.00201 -20.60103 -19.81595 -19.20030 -18.04228 -17.90367 -17.84070 -17.17376 -16.53753 -16.26485 -16.15282 -15.75922 -15.43377 -14.95771 -14.58041 -14.46082 -14.35196 -14.10452 -13.90541 -13.69023 -13.59348 -13.51639 -13.42962 -13.17010 -13.06996 -13.04913 -12.76382 -12.61573 -12.49637 -12.36456 -12.12361 -11.61437 -11.55635 -11.50586 -11.41543 -11.13152 -11.03221 -10.97910 -10.75848 -10.44627 -10.30142 -10.21699 -9.50570 -9.09147 -8.46930 -8.06370 -7.96395 -6.42287 -3.83197 2.15413 2.38296 3.19905 3.25386 3.25542 3.30091 3.51668 3.73492 3.87731 3.90205 3.98565 4.13882 4.16034 4.29967 4.41163 4.51143 4.58879 4.64466 4.74719 4.90659 4.95125 5.00301 5.09348 5.16521 5.20736 5.21948 5.23310 5.25544 5.37482 5.42076 5.46774 5.53538 5.61259 5.71598 5.78105 5.87052 5.96808 6.08091 6.11400 6.26691 7.00941 7.21300 7.54499 7.65576 7.67397 8.05669 8.60801 9.17288 9.53670 10.05289 10.75364 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.046880 B = 0.001301 C = 0.001284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.124883 B =21521.376552 C =21793.879060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.306 3.694 3 F -0.192 7.192 4 F -0.192 7.192 5 C -0.185 4.185 6 C 0.527 3.473 7 O -0.521 6.521 8 N -0.619 5.619 9 C 0.097 3.903 10 C -0.129 4.129 11 C -0.097 4.097 12 H 0.088 0.912 13 C -0.107 4.107 14 C 0.061 3.939 15 N -0.671 5.671 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.110 3.890 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.349 0.651 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.072 0.928 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.979 9.084 -14.188 32.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.269 3.731 3 F -0.173 7.173 4 F -0.173 7.173 5 C -0.226 4.226 6 C 0.314 3.686 7 O -0.396 6.396 8 N -0.354 5.354 9 C -0.026 4.026 10 C -0.167 4.167 11 C -0.117 4.117 12 H 0.106 0.894 13 C -0.145 4.145 14 C -0.068 4.068 15 N -0.303 5.303 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.012 4.012 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.168 0.832 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.808 9.653 -15.311 32.346 hybrid contribution -0.155 -0.392 1.376 1.439 sum -26.963 9.262 -13.935 31.733 Atomic orbital electron populations 1.22804 0.91087 1.05611 1.05777 1.20623 0.93128 0.76081 0.83255 1.93053 1.90576 1.36924 1.96765 1.93053 1.90574 1.80733 1.52947 1.22841 0.94769 1.05091 0.99851 1.19823 0.88978 0.78487 0.81274 1.90818 1.69842 1.44075 1.34856 1.48445 1.07909 1.56519 1.22482 1.22126 0.96850 0.96714 0.86884 1.22762 0.93901 1.02388 0.97657 1.22372 0.95035 0.98223 0.96084 0.89394 1.21476 0.95475 0.98501 0.99046 1.21941 0.90005 0.98446 0.96453 1.60038 1.31174 1.05150 1.33972 1.21658 0.96408 0.94984 0.95059 1.19832 0.88408 0.85504 0.83730 1.90524 1.57968 1.31875 1.66376 1.41858 1.19372 1.20747 1.38054 1.19665 0.95553 1.07279 1.20516 0.87969 1.25253 0.99709 0.95207 0.97700 1.69606 1.38222 1.10141 1.36405 0.85916 0.81609 0.77639 0.79046 1.19926 1.20975 1.19864 1.22333 0.79638 0.98327 1.00881 0.89085 0.89528 0.89079 0.85916 0.85940 0.91201 0.91193 0.89550 0.90063 0.91506 0.90253 0.91173 0.95519 0.83198 0.89663 0.93965 0.77470 0.91834 0.90946 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.65 9.38 37.16 0.35 -0.30 16 2 C 0.31 2.32 1.85 -26.73 -0.05 2.27 16 3 F -0.19 -2.07 16.14 2.25 0.04 -2.03 16 4 F -0.19 -2.07 16.15 2.25 0.04 -2.03 16 5 C -0.19 -1.02 4.49 -27.88 -0.13 -1.15 16 6 C 0.53 5.24 7.62 -10.99 -0.08 5.16 16 7 O -0.52 -7.64 15.09 5.56 0.08 -7.56 16 8 N -0.62 -5.03 3.33 -170.53 -0.57 -5.60 16 9 C 0.10 0.47 6.49 -3.07 -0.02 0.45 16 10 C -0.13 -0.70 5.59 -24.90 -0.14 -0.84 16 11 C -0.10 -0.70 3.07 -88.47 -0.27 -0.97 16 12 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 13 C -0.11 -0.96 4.99 -26.73 -0.13 -1.10 16 14 C 0.06 0.66 5.54 -3.82 -0.02 0.64 16 15 N -0.67 -10.42 6.12 -115.05 -0.70 -11.12 16 16 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 17 C 0.44 10.34 7.82 -10.98 -0.09 10.25 16 18 O -0.58 -15.85 15.78 5.55 0.09 -15.77 16 19 N -0.56 -14.23 5.29 -10.96 -0.06 -14.28 16 20 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 24 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.11 0.96 6.38 -2.53 -0.02 0.94 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.40 8.13 -51.93 -0.42 -0.03 16 37 H 0.08 0.45 8.01 -51.93 -0.42 0.04 16 38 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.26 7.51 -51.93 -0.39 -0.13 16 42 H 0.35 5.58 8.43 -39.29 -0.33 5.24 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.07 0.64 8.04 -51.93 -0.42 0.23 16 48 H 0.08 0.82 8.04 -51.92 -0.42 0.40 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -36.09 403.70 -7.89 -43.98 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.72 Total: 7.83 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -0.87 Total: 8.21 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.61 Total: -54.67 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.33 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.07 Total: -4.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.09 -7.89 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724727114.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.572 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds