Wall clock time and date at job start Wed Apr 1 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39898 * 109.46820 * 2 1 4 4 F 1.39896 * 109.46854 * 240.00215 * 2 1 3 5 5 C 1.52999 * 109.46852 * 119.99945 * 2 1 3 6 6 C 1.50701 * 109.46910 * 180.02562 * 5 2 1 7 7 O 1.21280 * 119.99718 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99755 * 180.02562 * 6 5 2 9 9 C 1.47022 * 125.65036 * 0.02562 * 8 6 5 10 10 C 1.54319 * 107.27131 * 178.89875 * 9 8 6 11 11 C 1.55162 * 102.94162 * 337.80675 * 10 9 8 12 12 H 1.08998 * 111.00838 * 277.38526 * 11 10 9 13 13 C 1.53007 * 111.00335 * 153.57819 * 11 10 9 14 14 C 1.52995 * 109.47182 * 66.45212 * 13 11 10 15 15 N 1.46906 * 109.46978 * 180.02562 * 14 13 11 16 16 C 1.46901 * 110.99793 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46921 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47117 * 59.99412 * 24 22 20 26 26 H 1.48498 * 109.47600 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46756 * 300.00019 * 24 22 20 28 28 C 1.47421 * 125.64580 * 179.97438 * 8 6 5 29 29 H 1.09000 * 109.46924 * 300.00334 * 1 2 3 30 30 H 1.08999 * 109.47060 * 59.99666 * 1 2 3 31 31 H 1.08991 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47234 * 59.99589 * 5 2 1 33 33 H 1.09005 * 109.47218 * 300.00063 * 5 2 1 34 34 H 1.08997 * 109.88286 * 59.48165 * 9 8 6 35 35 H 1.08999 * 110.01257 * 298.38930 * 9 8 6 36 36 H 1.09000 * 110.72195 * 219.44931 * 10 9 8 37 37 H 1.08996 * 110.72469 * 96.16756 * 10 9 8 38 38 H 1.09005 * 109.46845 * 306.45666 * 13 11 10 39 39 H 1.09002 * 109.46933 * 186.45766 * 13 11 10 40 40 H 1.08995 * 109.46859 * 60.00453 * 14 13 11 41 41 H 1.09002 * 109.47639 * 300.00121 * 14 13 11 42 42 H 1.00899 * 110.99995 * 56.04730 * 15 14 13 43 43 H 1.09002 * 109.47401 * 59.99808 * 16 15 14 44 44 H 1.09001 * 109.46874 * 299.99821 * 16 15 14 45 45 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 47 47 H 1.09001 * 110.37023 * 85.32979 * 28 8 6 48 48 H 1.09007 * 110.36664 * 323.00784 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7207 1.2496 7 8 4.1533 -0.1956 0.3399 8 7 4.2208 -1.3047 2.2602 9 6 3.6146 -1.9757 3.4194 10 6 4.7679 -2.5126 4.2929 11 6 5.9481 -2.6078 3.2901 12 1 5.8991 -3.5328 2.7156 13 6 7.2919 -2.4843 4.0112 14 6 7.4975 -3.6991 4.9181 15 7 8.7875 -3.5802 5.6110 16 6 9.0198 -4.7322 6.4924 17 6 10.3496 -4.5755 7.1838 18 8 11.0360 -3.5998 6.9643 19 7 10.7757 -5.5190 8.0469 20 6 11.9852 -5.3761 8.6764 21 1 12.5968 -4.5078 8.4802 22 6 12.4247 -6.3489 9.5657 23 7 11.6808 -7.4058 9.8039 24 14 14.0724 -6.1541 10.4239 25 1 14.0661 -4.9072 11.2304 26 1 14.3072 -7.3184 11.3152 27 1 15.1537 -6.0813 9.4086 28 6 5.6879 -1.3772 2.3859 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1393 34 1 2.9882 -2.8021 3.0836 35 1 3.0164 -1.2658 3.9906 36 1 4.5225 -3.4960 4.6939 37 1 5.0004 -1.8142 5.0967 38 1 7.2987 -1.5758 4.6137 39 1 8.0957 -2.4390 3.2764 40 1 7.4907 -4.6075 4.3157 41 1 6.6937 -3.7444 5.6529 42 1 8.8431 -2.7139 6.1253 43 1 9.0240 -5.6475 5.9006 44 1 8.2263 -4.7852 7.2378 45 1 10.2266 -6.2989 8.2227 46 1 11.9875 -8.0847 10.4251 47 1 6.0736 -0.4726 2.8561 48 1 6.1458 -1.5219 1.4073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724727114.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:00 Heat of formation + Delta-G solvation = -208.234797 kcal Electronic energy + Delta-G solvation = -29529.608259 eV Core-core repulsion = 24867.502210 eV Total energy + Delta-G solvation = -4662.106048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.88421 -47.91089 -41.15218 -40.14356 -38.95952 -37.00247 -35.88540 -34.48293 -33.75809 -33.22898 -30.90082 -30.22638 -29.03578 -27.45859 -25.69418 -24.19315 -23.27633 -22.69370 -21.37361 -20.92033 -20.39890 -19.88262 -18.63426 -18.44331 -17.85754 -17.73449 -17.12736 -17.01071 -16.86773 -16.50042 -16.16981 -15.95557 -15.60372 -15.36428 -15.21659 -14.92927 -14.71443 -14.41901 -14.27338 -14.06141 -14.02619 -13.78007 -13.61049 -13.53713 -13.43419 -13.28057 -13.09533 -13.07194 -13.01688 -12.96522 -12.71030 -12.42925 -12.17219 -12.11887 -12.01662 -11.80804 -11.59529 -11.50361 -11.45406 -11.05637 -10.33777 -10.00913 -9.73032 -9.26301 -8.46068 -5.94891 1.40404 1.42510 1.47918 1.53214 1.81043 2.06387 2.30027 2.79593 2.94724 3.11206 3.21340 3.27291 3.46945 3.50001 3.62366 3.68854 3.88511 3.96241 4.25477 4.32591 4.32974 4.35324 4.36553 4.40299 4.45995 4.53803 4.56955 4.64922 4.67094 4.72057 4.76111 4.83513 4.85154 4.93998 5.04227 5.06448 5.16229 5.26563 5.32812 5.41289 5.43408 5.92034 6.15075 6.40476 6.46092 6.61232 7.00300 7.13316 7.57189 8.12880 8.70976 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.046880 B = 0.001301 C = 0.001284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.124883 B =21521.376552 C =21793.879060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.284 3.716 3 F -0.218 7.218 4 F -0.218 7.218 5 C -0.175 4.175 6 C 0.513 3.487 7 O -0.584 6.584 8 N -0.617 5.617 9 C 0.093 3.907 10 C -0.125 4.125 11 C -0.086 4.086 12 H 0.091 0.909 13 C -0.100 4.100 14 C 0.065 3.935 15 N -0.691 5.691 16 C 0.067 3.933 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.106 3.894 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.343 0.657 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.064 0.936 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.681 7.793 -12.732 34.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.247 3.753 3 F -0.200 7.200 4 F -0.199 7.199 5 C -0.214 4.214 6 C 0.303 3.697 7 O -0.464 6.464 8 N -0.351 5.351 9 C -0.028 4.028 10 C -0.163 4.163 11 C -0.106 4.106 12 H 0.109 0.891 13 C -0.138 4.138 14 C -0.063 4.063 15 N -0.324 5.324 16 C -0.065 4.065 17 C 0.222 3.778 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.017 4.017 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.162 0.838 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -29.560 8.321 -13.828 33.679 hybrid contribution 0.693 0.034 0.894 1.132 sum -28.867 8.355 -12.934 32.717 Atomic orbital electron populations 1.22823 0.87410 1.07427 1.06635 1.21469 0.95690 0.74909 0.83206 1.92994 1.91181 1.38937 1.96860 1.92994 1.91177 1.81139 1.54628 1.22950 0.91095 1.07319 1.00045 1.20706 0.90915 0.77509 0.80583 1.90785 1.71420 1.46895 1.37313 1.48585 1.07599 1.55859 1.23029 1.22412 0.96879 0.97859 0.85670 1.22792 0.92875 1.03503 0.97108 1.22214 0.94829 0.97336 0.96191 0.89057 1.21376 0.96068 0.97957 0.98409 1.22011 0.88432 0.99215 0.96680 1.60039 1.34405 1.04275 1.33659 1.21514 0.92980 0.96346 0.95694 1.20990 0.90109 0.84048 0.82606 1.90492 1.59890 1.33412 1.67441 1.41925 1.18953 1.21457 1.38645 1.19637 0.97027 1.07460 1.22546 0.90439 1.26006 1.02844 0.94558 0.97637 1.69661 1.39413 1.10384 1.36524 0.85009 0.77401 0.78037 0.78010 1.19684 1.19384 1.19882 1.22268 0.80639 0.98905 0.99907 0.86768 0.90187 0.86735 0.82450 0.82540 0.88680 0.88910 0.87732 0.90015 0.91525 0.92185 0.90611 0.93165 0.83802 0.87931 0.91234 0.76899 0.91270 0.91725 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.77 9.38 71.98 0.68 -0.10 16 2 C 0.28 4.04 1.85 30.60 0.06 4.10 16 3 F -0.22 -4.84 16.14 44.97 0.73 -4.11 16 4 F -0.22 -4.81 16.15 44.97 0.73 -4.09 16 5 C -0.17 -1.48 4.49 29.85 0.13 -1.35 16 6 C 0.51 9.95 7.62 87.66 0.67 10.61 16 7 O -0.58 -18.17 15.09 -3.03 -0.05 -18.22 16 8 N -0.62 -9.20 3.33 -811.82 -2.70 -11.90 16 9 C 0.09 0.54 6.49 86.73 0.56 1.10 16 10 C -0.13 -0.91 5.59 31.78 0.18 -0.73 16 11 C -0.09 -1.10 3.07 -9.40 -0.03 -1.13 16 12 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 13 C -0.10 -1.71 4.99 30.60 0.15 -1.56 16 14 C 0.07 1.26 5.54 86.30 0.48 1.74 16 15 N -0.69 -20.63 6.12 -517.92 -3.17 -23.81 16 16 C 0.07 2.19 6.17 85.56 0.53 2.72 16 17 C 0.43 20.53 7.82 87.66 0.69 21.21 16 18 O -0.63 -34.81 15.78 -3.07 -0.05 -34.86 16 19 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 20 C -0.34 -19.14 9.68 84.04 0.81 -18.32 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 23 N -0.92 -49.05 13.05 21.66 0.28 -48.76 16 24 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 28 C 0.11 1.86 6.38 86.85 0.55 2.41 16 29 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.16 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.10 0.45 8.13 -2.39 -0.02 0.43 16 37 H 0.08 0.63 8.01 -2.39 -0.02 0.61 16 38 H 0.07 1.14 8.11 -2.38 -0.02 1.13 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 0.77 7.51 -2.39 -0.02 0.76 16 42 H 0.34 10.80 8.43 -89.69 -0.76 10.05 16 43 H 0.10 3.03 8.14 -2.39 -0.02 3.02 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 46 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 47 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 48 H 0.06 1.25 8.04 -2.38 -0.02 1.23 16 Total: -1.00 -83.64 403.70 1.59 -82.05 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.51 Total: 29.13 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 5.92 Total: 20.62 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -7.21 Total: -115.24 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.09 Total: -53.08 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 1.45 Total: -8.20 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -83.64 1.59 -82.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724727114.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.182 kcal (2) G-P(sol) polarization free energy of solvation -83.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds