Wall clock time and date at job start Wed Apr 1 2020 04:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39905 * 109.47057 * 2 1 4 4 F 1.39900 * 109.47435 * 119.99807 * 2 1 3 5 5 C 1.52997 * 109.47232 * 239.99929 * 2 1 3 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 2 1 7 7 O 1.21288 * 120.00038 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 2 9 9 C 1.46505 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.02808 * 35.00092 * 9 8 6 11 11 C 1.54520 * 109.03684 * 276.04358 * 9 8 6 12 12 C 1.50599 * 108.83787 * 162.14322 * 11 9 8 13 13 C 1.53917 * 112.87308 * 91.84068 * 12 11 9 14 14 N 1.47938 * 113.33368 * 317.74518 * 13 12 11 15 15 C 1.46897 * 110.99946 * 192.19003 * 14 13 12 16 16 C 1.50702 * 109.47416 * 297.40766 * 15 14 13 17 17 O 1.21294 * 119.99837 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00202 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99997 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00161 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00215 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99439 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00343 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46732 * 59.99952 * 23 21 19 25 25 H 1.48494 * 109.47313 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47131 * 300.00117 * 23 21 19 27 27 C 1.44306 * 113.64423 * 318.14608 * 14 13 12 28 28 C 1.45874 * 109.03830 * 153.95643 * 9 8 6 29 29 H 1.09001 * 109.47375 * 59.99937 * 1 2 3 30 30 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47140 * 299.99920 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99992 * 5 2 1 33 33 H 1.09001 * 109.47289 * 60.00075 * 5 2 1 34 34 H 0.97003 * 119.99640 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.57405 * 282.02044 * 11 9 8 36 36 H 1.09003 * 109.57664 * 42.39545 * 11 9 8 37 37 H 1.09000 * 108.82216 * 330.96597 * 12 11 9 38 38 H 1.08998 * 108.72721 * 212.65289 * 12 11 9 39 39 H 1.09005 * 108.70689 * 196.75219 * 13 12 11 40 40 H 1.09003 * 108.60942 * 78.67314 * 13 12 11 41 41 H 1.08999 * 109.47417 * 57.41329 * 15 14 13 42 42 H 1.09002 * 109.46756 * 177.41294 * 15 14 13 43 43 H 0.96996 * 119.99659 * 0.02562 * 18 16 15 44 44 H 0.97004 * 119.99804 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.69415 * 335.68947 * 27 14 13 46 46 H 1.09006 * 109.72393 * 215.11994 * 27 14 13 47 47 H 1.08997 * 108.84143 * 302.87295 * 28 9 8 48 48 H 1.08998 * 108.84628 * 61.23372 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 1.1423 5 6 2.0400 -0.7212 -1.2492 6 6 3.5470 -0.7207 -1.2496 7 8 4.1534 -0.1956 -0.3399 8 7 4.2209 -1.3038 -2.2607 9 6 5.6859 -1.3037 -2.2607 10 1 6.0413 -1.3941 -1.2343 11 6 6.1899 0.0314 -2.8531 12 6 7.6309 0.2244 -2.4606 13 6 8.6151 -0.3360 -3.5029 14 7 8.2087 -1.6513 -4.0446 15 6 9.3043 -2.2694 -4.8034 16 6 9.6463 -1.4029 -5.9880 17 8 9.0376 -0.3716 -6.1809 18 7 10.6292 -1.7733 -6.8325 19 6 10.9407 -0.9847 -7.9098 20 1 10.3987 -0.0665 -8.0816 21 6 11.9537 -1.3669 -8.7808 22 7 12.6134 -2.4839 -8.5715 23 14 12.3786 -0.2921 -10.2483 24 1 12.8013 1.0499 -9.7731 25 1 13.4863 -0.9167 -11.0151 26 1 11.1864 -0.1546 -11.1229 27 6 7.6977 -2.5566 -3.0438 28 6 6.1618 -2.4471 -3.0315 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.7358 -1.7235 -2.9884 35 1 6.1068 0.0034 -3.9396 36 1 5.5920 0.8540 -2.4605 37 1 7.8059 -0.2755 -1.5080 38 1 7.8201 1.2907 -2.3368 39 1 9.5961 -0.4371 -3.0385 40 1 8.6905 0.3735 -4.3270 41 1 10.1796 -2.3694 -4.1616 42 1 8.9944 -3.2547 -5.1515 43 1 11.1162 -2.5978 -6.6780 44 1 13.3203 -2.7509 -9.1797 45 1 8.0933 -2.2839 -2.0655 46 1 7.9912 -3.5778 -3.2872 47 1 5.7474 -3.3588 -2.6012 48 1 5.8073 -2.3519 -4.0579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724840987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:11 Heat of formation + Delta-G solvation = -171.130219 kcal Electronic energy + Delta-G solvation = -31117.563232 eV Core-core repulsion = 26457.066159 eV Total energy + Delta-G solvation = -4660.497073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.12083 -47.10610 -40.31673 -38.98760 -37.69531 -35.41740 -33.88052 -33.70671 -32.76495 -31.65307 -31.20825 -29.10328 -27.69275 -25.32667 -24.95306 -23.64511 -22.45279 -20.79375 -20.65499 -19.76134 -19.10453 -17.88970 -17.84548 -17.72998 -17.18944 -16.29369 -16.12070 -15.84940 -15.56241 -15.36673 -14.81831 -14.65885 -14.26962 -13.99232 -13.94976 -13.78666 -13.69470 -13.45879 -13.36020 -13.19684 -13.14286 -13.05526 -12.83978 -12.55456 -12.51004 -11.98781 -11.86449 -11.61280 -11.49908 -11.40640 -11.26115 -11.07222 -10.94650 -10.77529 -10.48705 -10.38813 -10.35914 -10.20547 -10.03006 -9.45491 -9.17841 -8.40321 -7.96519 -7.68663 -6.41105 -3.81747 2.37430 2.76825 3.20068 3.25790 3.30056 3.39980 3.66562 3.91647 4.00996 4.01516 4.08258 4.25102 4.59003 4.66478 4.75274 4.78033 4.84107 5.04747 5.05991 5.13688 5.25285 5.27486 5.28911 5.31692 5.32539 5.50484 5.57283 5.66358 5.78214 5.80196 5.88003 6.00743 6.02332 6.09135 6.22529 6.30393 6.33940 6.41091 6.49538 6.74540 7.25359 7.35158 7.55113 7.61508 7.98256 8.07407 8.63107 9.19047 9.55625 10.07828 10.76562 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.001811 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.195878 B =15455.557650 C =15744.480495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.307 3.693 3 F -0.192 7.192 4 F -0.193 7.193 5 C -0.191 4.191 6 C 0.511 3.489 7 O -0.521 6.521 8 N -0.724 5.724 9 C 0.153 3.847 10 H 0.080 0.920 11 C -0.117 4.117 12 C -0.113 4.113 13 C 0.056 3.944 14 N -0.527 5.527 15 C 0.051 3.949 16 C 0.443 3.557 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.069 3.931 28 C -0.125 4.125 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.399 0.601 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.023 0.977 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.671 -2.376 15.015 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.270 3.730 3 F -0.173 7.173 4 F -0.174 7.174 5 C -0.232 4.232 6 C 0.295 3.705 7 O -0.397 6.397 8 N -0.375 5.375 9 C 0.050 3.950 10 H 0.098 0.902 11 C -0.155 4.155 12 C -0.151 4.151 13 C -0.071 4.071 14 N -0.251 5.251 15 C -0.080 4.080 16 C 0.229 3.771 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.060 4.060 28 C -0.164 4.164 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.233 0.767 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.041 0.959 40 H 0.124 0.876 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.805 -1.279 15.173 26.595 hybrid contribution 1.096 -0.452 -0.453 1.269 sum -20.710 -1.730 14.719 25.466 Atomic orbital electron populations 1.22806 0.91281 1.05512 1.05709 1.20598 0.92990 0.76133 0.83307 1.93057 1.90561 1.36902 1.96765 1.93046 1.90582 1.80762 1.53022 1.22874 0.95404 1.05040 0.99878 1.20145 0.89015 0.78779 0.82515 1.90802 1.69815 1.43548 1.35498 1.46194 1.07878 1.58638 1.24812 1.20052 0.78129 0.96140 1.00698 0.90215 1.21652 0.95628 0.95908 1.02354 1.21291 0.94774 1.01042 0.98033 1.22656 0.94701 0.91402 0.98302 1.60271 1.35311 1.03227 1.26327 1.21929 0.92826 0.98038 0.95229 1.19787 0.83519 0.88209 0.85599 1.90456 1.53816 1.26492 1.75409 1.41863 1.31288 1.23237 1.23770 1.19638 1.16410 1.05086 1.01672 0.87999 1.25252 0.96412 0.96847 0.99452 1.69603 1.23615 1.22409 1.38749 0.85926 0.78024 0.79621 0.80691 1.19955 1.21016 1.19923 1.21632 0.93671 0.96396 0.94346 1.20768 0.97027 0.96870 1.01739 0.89090 0.89156 0.89657 0.85982 0.85869 0.76657 0.89989 0.92266 0.92909 0.91441 0.95866 0.87576 0.93630 0.89384 0.77529 0.91865 0.93922 0.91009 0.91894 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.84 9.38 37.16 0.35 -0.49 16 2 C 0.31 2.62 1.85 -26.73 -0.05 2.57 16 3 F -0.19 -2.29 16.14 2.25 0.04 -2.25 16 4 F -0.19 -2.23 16.15 2.25 0.04 -2.20 16 5 C -0.19 -1.21 5.30 -27.89 -0.15 -1.36 16 6 C 0.51 5.48 7.44 -10.99 -0.08 5.40 16 7 O -0.52 -8.07 14.48 5.55 0.08 -7.99 16 8 N -0.72 -6.64 5.03 -56.33 -0.28 -6.92 16 9 C 0.15 1.74 2.01 -70.50 -0.14 1.60 16 10 H 0.08 1.04 7.00 -51.93 -0.36 0.68 16 11 C -0.12 -1.55 5.20 -27.13 -0.14 -1.69 16 12 C -0.11 -1.57 5.28 -27.45 -0.14 -1.71 16 13 C 0.06 0.92 4.87 -2.77 -0.01 0.90 16 14 N -0.53 -8.32 3.79 -236.08 -0.89 -9.21 16 15 C 0.05 0.88 5.29 -4.98 -0.03 0.85 16 16 C 0.44 10.21 7.53 -10.98 -0.08 10.12 16 17 O -0.58 -15.09 13.64 5.55 0.08 -15.01 16 18 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.07 0.85 5.41 -4.70 -0.03 0.82 16 28 C -0.13 -1.32 4.73 -29.59 -0.14 -1.46 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 2.46 8.57 -40.82 -0.35 2.11 16 35 H 0.08 1.22 7.78 -51.93 -0.40 0.81 16 36 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 37 H 0.05 0.70 6.66 -51.93 -0.35 0.35 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.38 7.95 -51.93 -0.41 -0.03 16 40 H 0.11 2.13 5.85 -51.93 -0.30 1.82 16 41 H 0.05 0.74 8.04 -51.93 -0.42 0.32 16 42 H 0.09 1.36 7.79 -51.93 -0.40 0.95 16 43 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 45 H 0.04 0.51 6.79 -51.93 -0.35 0.16 16 46 H 0.07 0.78 7.41 -51.93 -0.38 0.40 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -34.66 388.20 -7.71 -42.37 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.37 Total: 9.58 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.89 Total: 7.67 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.51 Total: -53.95 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.16 Total: -23.01 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.66 -7.71 -42.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724840987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.761 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds