Wall clock time and date at job start Wed Apr 1 2020 04:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39905 * 109.47057 * 2 1 4 4 F 1.39900 * 109.47435 * 119.99807 * 2 1 3 5 5 C 1.52997 * 109.47232 * 239.99929 * 2 1 3 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 2 1 7 7 O 1.21288 * 120.00038 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 2 9 9 C 1.46505 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.02808 * 35.00092 * 9 8 6 11 11 C 1.54520 * 109.03684 * 276.04358 * 9 8 6 12 12 C 1.50599 * 108.83787 * 162.14322 * 11 9 8 13 13 C 1.53917 * 112.87308 * 91.84068 * 12 11 9 14 14 N 1.47938 * 113.33368 * 317.74518 * 13 12 11 15 15 C 1.46897 * 110.99946 * 192.19003 * 14 13 12 16 16 C 1.50702 * 109.47416 * 297.40766 * 15 14 13 17 17 O 1.21294 * 119.99837 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00202 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99997 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00161 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00215 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99439 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00343 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46732 * 59.99952 * 23 21 19 25 25 H 1.48494 * 109.47313 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47131 * 300.00117 * 23 21 19 27 27 C 1.44306 * 113.64423 * 318.14608 * 14 13 12 28 28 C 1.45874 * 109.03830 * 153.95643 * 9 8 6 29 29 H 1.09001 * 109.47375 * 59.99937 * 1 2 3 30 30 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47140 * 299.99920 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99992 * 5 2 1 33 33 H 1.09001 * 109.47289 * 60.00075 * 5 2 1 34 34 H 0.97003 * 119.99640 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.57405 * 282.02044 * 11 9 8 36 36 H 1.09003 * 109.57664 * 42.39545 * 11 9 8 37 37 H 1.09000 * 108.82216 * 330.96597 * 12 11 9 38 38 H 1.08998 * 108.72721 * 212.65289 * 12 11 9 39 39 H 1.09005 * 108.70689 * 196.75219 * 13 12 11 40 40 H 1.09003 * 108.60942 * 78.67314 * 13 12 11 41 41 H 1.08999 * 109.47417 * 57.41329 * 15 14 13 42 42 H 1.09002 * 109.46756 * 177.41294 * 15 14 13 43 43 H 0.96996 * 119.99659 * 0.02562 * 18 16 15 44 44 H 0.97004 * 119.99804 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.69415 * 335.68947 * 27 14 13 46 46 H 1.09006 * 109.72393 * 215.11994 * 27 14 13 47 47 H 1.08997 * 108.84143 * 302.87295 * 28 9 8 48 48 H 1.08998 * 108.84628 * 61.23372 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 1.1423 5 6 2.0400 -0.7212 -1.2492 6 6 3.5470 -0.7207 -1.2496 7 8 4.1534 -0.1956 -0.3399 8 7 4.2209 -1.3038 -2.2607 9 6 5.6859 -1.3037 -2.2607 10 1 6.0413 -1.3941 -1.2343 11 6 6.1899 0.0314 -2.8531 12 6 7.6309 0.2244 -2.4606 13 6 8.6151 -0.3360 -3.5029 14 7 8.2087 -1.6513 -4.0446 15 6 9.3043 -2.2694 -4.8034 16 6 9.6463 -1.4029 -5.9880 17 8 9.0376 -0.3716 -6.1809 18 7 10.6292 -1.7733 -6.8325 19 6 10.9407 -0.9847 -7.9098 20 1 10.3987 -0.0665 -8.0816 21 6 11.9537 -1.3669 -8.7808 22 7 12.6134 -2.4839 -8.5715 23 14 12.3786 -0.2921 -10.2483 24 1 12.8013 1.0499 -9.7731 25 1 13.4863 -0.9167 -11.0151 26 1 11.1864 -0.1546 -11.1229 27 6 7.6977 -2.5566 -3.0438 28 6 6.1618 -2.4471 -3.0315 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.7358 -1.7235 -2.9884 35 1 6.1068 0.0034 -3.9396 36 1 5.5920 0.8540 -2.4605 37 1 7.8059 -0.2755 -1.5080 38 1 7.8201 1.2907 -2.3368 39 1 9.5961 -0.4371 -3.0385 40 1 8.6905 0.3735 -4.3270 41 1 10.1796 -2.3694 -4.1616 42 1 8.9944 -3.2547 -5.1515 43 1 11.1162 -2.5978 -6.6780 44 1 13.3203 -2.7509 -9.1797 45 1 8.0933 -2.2839 -2.0655 46 1 7.9912 -3.5778 -3.2872 47 1 5.7474 -3.3588 -2.6012 48 1 5.8073 -2.3519 -4.0579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724840987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:10 Heat of formation + Delta-G solvation = -196.927701 kcal Electronic energy + Delta-G solvation = -31118.681894 eV Core-core repulsion = 26457.066159 eV Total energy + Delta-G solvation = -4661.615736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.83830 -47.86431 -41.27544 -40.38221 -39.15168 -36.60151 -35.78050 -34.37813 -33.82721 -33.19449 -32.59498 -29.83180 -28.90631 -26.89514 -26.13711 -25.06801 -23.10141 -21.70647 -21.55665 -21.17358 -20.64602 -19.80729 -18.56268 -18.48581 -18.03861 -17.66190 -17.07682 -16.85957 -16.67861 -16.49332 -16.28517 -16.02416 -15.66652 -15.37389 -15.33906 -14.81419 -14.68943 -14.57586 -14.29514 -14.22507 -14.09935 -13.71914 -13.56049 -13.43498 -13.36036 -13.16339 -13.05583 -13.00364 -12.87660 -12.78134 -12.41607 -12.38691 -12.13574 -12.00685 -11.96205 -11.79780 -11.72014 -11.47991 -11.38985 -10.91385 -10.21469 -10.05523 -9.96943 -9.02429 -8.44080 -5.92122 1.40396 1.42073 1.52666 1.59361 2.05621 2.09771 2.30063 2.80797 2.85375 3.19437 3.22931 3.39355 3.50528 3.52483 3.69904 3.86636 4.03640 4.09076 4.16358 4.18865 4.37827 4.38499 4.44672 4.47071 4.50161 4.54376 4.62781 4.68150 4.73538 4.78444 4.80055 4.87085 5.01040 5.05478 5.07247 5.17509 5.24526 5.36315 5.41347 5.44870 5.54310 5.94227 6.12622 6.44501 6.54076 6.64705 7.16463 7.24623 7.60770 8.17263 8.72995 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.001811 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.195878 B =15455.557650 C =15744.480495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.284 3.716 3 F -0.219 7.219 4 F -0.217 7.217 5 C -0.182 4.182 6 C 0.502 3.498 7 O -0.577 6.577 8 N -0.712 5.712 9 C 0.161 3.839 10 H 0.066 0.934 11 C -0.110 4.110 12 C -0.106 4.106 13 C 0.064 3.936 14 N -0.536 5.536 15 C 0.062 3.938 16 C 0.441 3.559 17 O -0.613 6.613 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.065 3.935 28 C -0.117 4.117 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.417 0.583 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.116 0.884 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.047 0.953 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.401 -4.260 14.838 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.248 3.752 3 F -0.201 7.201 4 F -0.198 7.198 5 C -0.221 4.221 6 C 0.289 3.711 7 O -0.456 6.456 8 N -0.364 5.364 9 C 0.056 3.944 10 H 0.084 0.916 11 C -0.148 4.148 12 C -0.144 4.144 13 C -0.063 4.063 14 N -0.261 5.261 15 C -0.069 4.069 16 C 0.228 3.772 17 O -0.499 6.499 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.064 4.064 28 C -0.155 4.155 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.097 0.903 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.255 0.745 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.564 -3.205 14.984 28.108 hybrid contribution 1.607 0.159 -0.353 1.653 sum -21.957 -3.045 14.631 26.560 Atomic orbital electron populations 1.22822 0.87700 1.07378 1.06474 1.21427 0.95525 0.74924 0.83320 1.92999 1.91165 1.39017 1.96870 1.92993 1.91145 1.81101 1.54570 1.22981 0.91699 1.07512 0.99957 1.20971 0.90958 0.77509 0.81642 1.90782 1.71309 1.45887 1.37608 1.46056 1.07011 1.58160 1.25130 1.19833 0.79598 0.95229 0.99738 0.91608 1.21551 0.95086 0.97077 1.01121 1.21217 0.94709 1.00865 0.97649 1.22441 0.95468 0.91321 0.97114 1.60235 1.34616 1.03519 1.27748 1.21851 0.94249 0.97663 0.93162 1.20860 0.81971 0.88111 0.86240 1.90449 1.54677 1.28283 1.76454 1.41935 1.32226 1.23305 1.23906 1.19595 1.17526 1.05292 1.03598 0.90399 1.25999 0.95783 0.98025 1.01528 1.69665 1.23752 1.23203 1.39567 0.85020 0.78015 0.77946 0.77545 1.19947 1.19577 1.19689 1.21809 0.94557 0.96579 0.93422 1.20677 0.95839 0.97551 1.01435 0.87028 0.86701 0.90257 0.82120 0.82742 0.74541 0.91694 0.93404 0.91807 0.91745 0.96097 0.91829 0.91926 0.86613 0.77082 0.91410 0.93452 0.88792 0.88980 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.11 9.38 71.98 0.68 -0.43 16 2 C 0.28 4.46 1.85 30.59 0.06 4.52 16 3 F -0.22 -5.27 16.14 44.97 0.73 -4.54 16 4 F -0.22 -4.96 16.15 44.97 0.73 -4.23 16 5 C -0.18 -1.77 5.30 29.85 0.16 -1.62 16 6 C 0.50 10.08 7.44 87.66 0.65 10.73 16 7 O -0.58 -18.02 14.48 -3.05 -0.04 -18.06 16 8 N -0.71 -11.58 5.03 -450.53 -2.27 -13.84 16 9 C 0.16 3.43 2.01 43.32 0.09 3.51 16 10 H 0.07 1.65 7.00 -2.39 -0.02 1.63 16 11 C -0.11 -2.93 5.20 30.33 0.16 -2.77 16 12 C -0.11 -2.99 5.28 30.13 0.16 -2.84 16 13 C 0.06 2.13 4.87 86.41 0.42 2.55 16 14 N -0.54 -16.40 3.79 -900.81 -3.41 -19.82 16 15 C 0.06 2.05 5.29 85.56 0.45 2.50 16 16 C 0.44 20.58 7.53 87.66 0.66 21.24 16 17 O -0.61 -33.16 13.64 -3.07 -0.04 -33.20 16 18 N -0.58 -29.24 5.29 -306.98 -1.62 -30.87 16 19 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.92 -49.52 13.05 21.66 0.28 -49.24 16 23 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.06 1.42 5.41 87.12 0.47 1.89 16 28 C -0.12 -2.14 4.73 28.74 0.14 -2.00 16 29 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.42 3.82 8.57 -92.71 -0.79 3.02 16 35 H 0.06 1.96 7.78 -2.39 -0.02 1.94 16 36 H 0.05 1.38 8.02 -2.39 -0.02 1.36 16 37 H 0.06 1.66 6.66 -2.39 -0.02 1.65 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.02 0.69 7.95 -2.38 -0.02 0.67 16 40 H 0.06 2.69 5.85 -2.39 -0.01 2.67 16 41 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 42 H 0.12 3.25 7.79 -2.39 -0.02 3.23 16 43 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 44 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 45 H 0.05 1.02 6.79 -2.39 -0.02 1.00 16 46 H 0.09 1.68 7.41 -2.38 -0.02 1.66 16 47 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 Total: -1.00 -80.11 388.20 1.21 -78.89 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.53 Total: 30.75 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 5.37 Total: 19.17 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -7.02 Total: -113.76 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.09 Total: -51.26 kcal Atomic # 9 Polarization: -10.22 SS G_CDS: 1.45 Total: -8.77 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -80.11 1.21 -78.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724840987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.034 kcal (2) G-P(sol) polarization free energy of solvation -80.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds