Wall clock time and date at job start Wed Apr 1 2020 05:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46821 * 2 1 4 4 N 1.46508 * 109.47118 * 119.99428 * 2 1 3 5 5 C 1.46498 * 120.00007 * 294.77691 * 4 2 1 6 6 C 1.53002 * 109.46950 * 262.30852 * 5 4 2 7 7 N 1.46496 * 109.46900 * 174.30072 * 6 5 4 8 8 C 1.46506 * 120.00479 * 98.23033 * 7 6 5 9 9 C 1.36937 * 120.00070 * 278.23219 * 7 6 5 10 10 H 1.08000 * 119.99823 * 29.31783 * 9 7 6 11 11 C 1.38811 * 120.00490 * 209.32298 * 9 7 6 12 12 N 1.31624 * 119.99432 * 7.45428 * 11 9 7 13 13 Si 1.86794 * 120.00473 * 187.45532 * 11 9 7 14 14 H 1.48505 * 109.47220 * 89.99546 * 13 11 9 15 15 H 1.48496 * 109.47345 * 209.99769 * 13 11 9 16 16 H 1.48497 * 109.47182 * 329.99810 * 13 11 9 17 17 C 1.34776 * 119.99627 * 114.77370 * 4 2 1 18 18 O 1.21560 * 119.99897 * 5.77630 * 17 4 2 19 19 C 1.47852 * 119.99845 * 185.77141 * 17 4 2 20 20 C 1.39717 * 119.43826 * 176.88920 * 19 17 4 21 21 C 1.36996 * 119.58974 * 180.27317 * 20 19 17 22 22 C 1.39885 * 118.37260 * 359.47345 * 21 20 19 23 23 N 1.35421 * 133.68901 * 180.25425 * 22 21 20 24 24 C 1.30930 * 109.57521 * 179.97438 * 23 22 21 25 25 O 1.35172 * 125.00163 * 180.02562 * 24 23 22 26 26 N 1.36392 * 110.00053 * 0.02562 * 24 23 22 27 27 H 0.96997 * 126.31835 * 179.97438 * 26 24 23 28 28 C 1.38249 * 107.36252 * 359.97438 * 26 24 23 29 29 N 1.31768 * 133.71605 * 179.97438 * 28 26 24 30 30 H 1.08999 * 109.47348 * 299.99646 * 1 2 3 31 31 H 1.08997 * 109.46959 * 60.00865 * 1 2 3 32 32 H 1.09005 * 109.46409 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47471 * 239.99596 * 2 1 3 34 34 H 1.08998 * 109.46920 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46987 * 299.99610 * 3 2 1 36 36 H 1.09004 * 109.47216 * 59.99764 * 3 2 1 37 37 H 1.09004 * 109.47191 * 22.30531 * 5 4 2 38 38 H 1.08997 * 109.46930 * 142.30377 * 5 4 2 39 39 H 1.09001 * 109.46423 * 294.29524 * 6 5 4 40 40 H 1.08991 * 109.47333 * 54.29475 * 6 5 4 41 41 H 1.08997 * 109.46991 * 95.58322 * 8 7 6 42 42 H 1.08997 * 109.47112 * 215.58493 * 8 7 6 43 43 H 1.08997 * 109.46595 * 335.58756 * 8 7 6 44 44 H 0.97004 * 119.99314 * 180.02562 * 12 11 9 45 45 H 1.08001 * 120.20477 * 0.02562 * 20 19 17 46 46 H 1.07998 * 120.81334 * 179.74237 * 21 20 19 47 47 H 0.96701 * 114.00369 * 269.97850 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.7613 -0.1267 2.5238 6 6 2.9894 0.6567 2.9917 7 7 2.6851 1.3326 4.2553 8 6 3.1012 0.7329 5.5256 9 6 2.0116 2.5249 4.2492 10 1 1.3119 2.7458 3.4568 11 6 2.2284 3.4498 5.2614 12 7 3.1839 3.2477 6.1438 13 14 1.1641 4.9810 5.3712 14 1 -0.0210 4.7002 6.2209 15 1 1.9511 6.0889 5.9698 16 1 0.7161 5.3711 4.0103 17 6 2.7041 -1.8445 1.0755 18 8 3.0086 -2.2581 -0.0263 19 6 3.0862 -2.6073 2.2830 20 6 3.7393 -3.8343 2.1421 21 6 4.0897 -4.5463 3.2588 22 6 3.7868 -4.0068 4.5133 23 7 3.9873 -4.4264 5.7852 24 6 3.5089 -3.5389 6.6205 25 8 3.5438 -3.6441 7.9677 26 7 2.9700 -2.4925 5.9313 27 1 2.5512 -1.7064 6.3154 28 6 3.1309 -2.7591 4.5843 29 7 2.8076 -2.1119 3.4830 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 0.9013 0.5413 2.4745 38 1 1.5550 -0.9333 3.2273 39 1 3.8237 -0.0293 3.1383 40 1 3.2564 1.3977 2.2383 41 1 4.0534 1.1632 5.8358 42 1 2.3468 0.9335 6.2864 43 1 3.2129 -0.3439 5.3996 44 1 3.3351 3.8938 6.8513 45 1 3.9630 -4.2210 1.1588 46 1 4.5915 -5.4988 3.1727 47 1 2.7717 -4.0850 8.3480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725731800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:31 Heat of formation + Delta-G solvation = 71.085976 kcal Electronic energy + Delta-G solvation = -32285.157651 eV Core-core repulsion = 28085.853047 eV Total energy + Delta-G solvation = -4199.304604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.51724 -40.26412 -38.59536 -37.04991 -36.66922 -35.24508 -33.95433 -32.49774 -31.38895 -31.03731 -29.41007 -28.08431 -26.97952 -25.90502 -24.73027 -23.60185 -23.48148 -21.86566 -21.60520 -20.64470 -19.52813 -19.10361 -17.96250 -17.63022 -17.15953 -16.72519 -16.26834 -15.93302 -15.20320 -15.08526 -14.92516 -14.50096 -14.12230 -13.94389 -13.73470 -13.43919 -13.31800 -13.03816 -12.98967 -12.63229 -12.37605 -12.27416 -12.20337 -11.96325 -11.86766 -11.51050 -11.44040 -11.12049 -10.94038 -10.90777 -10.84118 -10.66532 -10.50504 -10.20766 -10.04182 -9.93859 -9.79429 -9.05090 -8.86613 -8.67277 -8.51693 -8.26453 -6.66255 -5.76839 -3.30350 0.31016 1.11061 1.98102 2.25982 2.93633 3.12259 3.32211 3.38863 3.40375 3.41077 3.85155 4.10781 4.35320 4.47152 4.70882 4.75631 4.94348 5.09080 5.26418 5.38976 5.40977 5.46076 5.56079 5.65351 5.69274 5.77325 5.86432 5.91956 5.93714 6.00155 6.09931 6.24624 6.33826 6.34425 6.39205 6.48097 6.55278 6.60160 6.63013 6.97163 7.06067 7.19381 7.25347 7.42397 7.58343 7.64360 7.70934 7.76110 8.31054 8.39854 9.20133 9.82066 10.35230 11.26530 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007953 B = 0.005216 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.741047 B = 5366.968281 C = 8437.031233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 C -0.162 4.162 4 N -0.577 5.577 5 C 0.069 3.931 6 C 0.151 3.849 7 N -0.593 5.593 8 C 0.164 3.836 9 C -0.254 4.254 10 H 0.065 0.935 11 C 0.007 3.993 12 N -0.907 5.907 13 Si 0.902 3.098 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.571 3.429 18 O -0.547 6.547 19 C 0.116 3.884 20 C -0.121 4.121 21 C -0.031 4.031 22 C 0.034 3.966 23 N -0.485 5.485 24 C 0.476 3.524 25 O -0.436 6.436 26 N -0.579 5.579 27 H 0.436 0.564 28 C 0.247 3.753 29 N -0.417 5.417 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.117 0.883 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.032 0.968 42 H 0.032 0.968 43 H -0.005 1.005 44 H 0.252 0.748 45 H 0.156 0.844 46 H 0.149 0.851 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 -14.367 -3.943 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 C -0.220 4.220 4 N -0.308 5.308 5 C -0.055 4.055 6 C 0.022 3.978 7 N -0.316 5.316 8 C 0.019 3.981 9 C -0.384 4.384 10 H 0.083 0.917 11 C -0.192 4.192 12 N -0.551 5.551 13 Si 0.732 3.268 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.358 3.642 18 O -0.425 6.425 19 C -0.032 4.032 20 C -0.145 4.145 21 C -0.059 4.059 22 C -0.088 4.088 23 N -0.218 5.218 24 C 0.170 3.830 25 O -0.238 6.238 26 N -0.208 5.208 27 H 0.280 0.720 28 C 0.009 3.991 29 N -0.132 5.132 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.014 0.986 44 H 0.063 0.937 45 H 0.174 0.826 46 H 0.166 0.834 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.636 -14.145 -3.941 14.919 hybrid contribution -1.178 1.322 0.668 1.892 sum -3.814 -12.823 -3.273 13.773 Atomic orbital electron populations 1.22140 0.95124 1.01992 1.02511 1.21104 0.93946 0.93623 0.88577 1.22197 1.01810 0.95177 1.02782 1.48093 1.52401 1.21458 1.08805 1.23292 1.00957 0.99925 0.81310 1.21023 0.93683 0.93992 0.89055 1.43640 1.66672 1.21801 0.99531 1.20877 0.99500 0.90190 0.87580 1.19103 1.16750 0.92573 1.09974 0.91739 1.25181 0.97233 0.97546 0.99252 1.70015 1.31439 1.36237 1.17446 0.86295 0.79613 0.83058 0.77790 1.21550 1.21715 1.20407 1.17716 0.78548 0.80963 0.87006 1.90748 1.56007 1.69774 1.25968 1.20986 0.98262 0.93951 0.89952 1.21504 0.98401 0.94268 1.00282 1.20374 0.97506 1.00073 0.87926 1.19683 1.02088 0.94349 0.92670 1.70618 1.25211 1.26956 0.98993 1.20263 0.93668 0.84243 0.84797 1.84841 1.47468 1.80756 1.10706 1.43524 1.50669 1.22290 1.04358 0.71963 1.18712 1.01512 0.93646 0.85214 1.67185 1.17981 1.31981 0.96098 0.91871 0.91636 0.92674 0.88558 0.92188 0.91932 0.90986 0.91346 0.86592 0.94580 0.94208 0.95018 0.94953 0.98635 0.93748 0.82614 0.83368 0.72747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.26 37.16 0.34 -1.59 16 2 C 0.13 1.82 3.22 -67.92 -0.22 1.61 16 3 C -0.16 -2.26 8.07 37.16 0.30 -1.96 16 4 N -0.58 -9.12 2.39 -167.20 -0.40 -9.52 16 5 C 0.07 1.21 4.36 -4.04 -0.02 1.19 16 6 C 0.15 3.08 5.32 -4.04 -0.02 3.06 16 7 N -0.59 -14.12 2.93 -181.12 -0.53 -14.65 16 8 C 0.16 3.75 8.81 59.85 0.53 4.27 16 9 C -0.25 -6.62 9.55 -15.06 -0.14 -6.76 16 10 H 0.06 1.64 7.84 -52.49 -0.41 1.23 16 11 C 0.01 0.18 5.21 -17.43 -0.09 0.09 16 12 N -0.91 -25.68 10.81 55.49 0.60 -25.08 16 13 Si 0.90 21.17 29.56 -169.99 -5.02 16.15 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.57 9.29 7.57 -12.33 -0.09 9.20 16 18 O -0.55 -9.58 15.64 5.31 0.08 -9.50 16 19 C 0.12 1.76 6.55 -82.97 -0.54 1.22 16 20 C -0.12 -1.52 9.55 -39.48 -0.38 -1.89 16 21 C -0.03 -0.37 10.16 -39.42 -0.40 -0.77 16 22 C 0.03 0.48 7.24 -84.57 -0.61 -0.13 16 23 N -0.49 -6.74 11.30 -12.11 -0.14 -6.87 16 24 C 0.48 5.86 9.39 -88.77 -0.83 5.02 16 25 O -0.44 -3.99 13.62 -17.21 -0.23 -4.23 16 26 N -0.58 -7.70 5.48 -13.33 -0.07 -7.78 16 27 H 0.44 5.66 7.20 -40.82 -0.29 5.36 16 28 C 0.25 3.69 7.69 -155.52 -1.20 2.49 16 29 N -0.42 -6.57 4.31 -8.77 -0.04 -6.61 16 30 H 0.06 0.81 6.93 -51.93 -0.36 0.45 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.38 6.91 -51.93 -0.36 1.02 16 34 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.14 6.79 -51.93 -0.35 0.79 16 37 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 38 H 0.12 2.06 4.95 -61.14 -0.30 1.75 16 39 H 0.04 0.76 6.79 -51.93 -0.35 0.40 16 40 H 0.04 0.86 6.22 -51.93 -0.32 0.53 16 41 H 0.03 0.83 7.20 -51.93 -0.37 0.46 16 42 H 0.03 0.77 7.64 -51.93 -0.40 0.37 16 43 H 0.00 -0.09 4.12 -51.93 -0.21 -0.30 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.16 1.70 7.61 -52.49 -0.40 1.30 16 46 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.41 1.31 9.06 45.56 0.41 1.72 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -32.72 373.67 -8.80 -41.51 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.30 Total: 5.91 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: -3.38 Total: 15.04 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -0.58 Total: -70.51 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.15 Total: -13.73 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.72 -8.80 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725731800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.596 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds