Wall clock time and date at job start Wed Apr 1 2020 05:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46821 * 2 1 4 4 N 1.46508 * 109.47118 * 119.99428 * 2 1 3 5 5 C 1.46498 * 120.00007 * 294.77691 * 4 2 1 6 6 C 1.53002 * 109.46950 * 262.30852 * 5 4 2 7 7 N 1.46496 * 109.46900 * 174.30072 * 6 5 4 8 8 C 1.46506 * 120.00479 * 98.23033 * 7 6 5 9 9 C 1.36937 * 120.00070 * 278.23219 * 7 6 5 10 10 H 1.08000 * 119.99823 * 29.31783 * 9 7 6 11 11 C 1.38811 * 120.00490 * 209.32298 * 9 7 6 12 12 N 1.31624 * 119.99432 * 7.45428 * 11 9 7 13 13 Si 1.86794 * 120.00473 * 187.45532 * 11 9 7 14 14 H 1.48505 * 109.47220 * 89.99546 * 13 11 9 15 15 H 1.48496 * 109.47345 * 209.99769 * 13 11 9 16 16 H 1.48497 * 109.47182 * 329.99810 * 13 11 9 17 17 C 1.34776 * 119.99627 * 114.77370 * 4 2 1 18 18 O 1.21560 * 119.99897 * 5.77630 * 17 4 2 19 19 C 1.47852 * 119.99845 * 185.77141 * 17 4 2 20 20 C 1.39717 * 119.43826 * 176.88920 * 19 17 4 21 21 C 1.36996 * 119.58974 * 180.27317 * 20 19 17 22 22 C 1.39885 * 118.37260 * 359.47345 * 21 20 19 23 23 N 1.35421 * 133.68901 * 180.25425 * 22 21 20 24 24 C 1.30930 * 109.57521 * 179.97438 * 23 22 21 25 25 O 1.35172 * 125.00163 * 180.02562 * 24 23 22 26 26 N 1.36392 * 110.00053 * 0.02562 * 24 23 22 27 27 H 0.96997 * 126.31835 * 179.97438 * 26 24 23 28 28 C 1.38249 * 107.36252 * 359.97438 * 26 24 23 29 29 N 1.31768 * 133.71605 * 179.97438 * 28 26 24 30 30 H 1.08999 * 109.47348 * 299.99646 * 1 2 3 31 31 H 1.08997 * 109.46959 * 60.00865 * 1 2 3 32 32 H 1.09005 * 109.46409 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47471 * 239.99596 * 2 1 3 34 34 H 1.08998 * 109.46920 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46987 * 299.99610 * 3 2 1 36 36 H 1.09004 * 109.47216 * 59.99764 * 3 2 1 37 37 H 1.09004 * 109.47191 * 22.30531 * 5 4 2 38 38 H 1.08997 * 109.46930 * 142.30377 * 5 4 2 39 39 H 1.09001 * 109.46423 * 294.29524 * 6 5 4 40 40 H 1.08991 * 109.47333 * 54.29475 * 6 5 4 41 41 H 1.08997 * 109.46991 * 95.58322 * 8 7 6 42 42 H 1.08997 * 109.47112 * 215.58493 * 8 7 6 43 43 H 1.08997 * 109.46595 * 335.58756 * 8 7 6 44 44 H 0.97004 * 119.99314 * 180.02562 * 12 11 9 45 45 H 1.08001 * 120.20477 * 0.02562 * 20 19 17 46 46 H 1.07998 * 120.81334 * 179.74237 * 21 20 19 47 47 H 0.96701 * 114.00369 * 269.97850 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.7613 -0.1267 2.5238 6 6 2.9894 0.6567 2.9917 7 7 2.6851 1.3326 4.2553 8 6 3.1012 0.7329 5.5256 9 6 2.0116 2.5249 4.2492 10 1 1.3119 2.7458 3.4568 11 6 2.2284 3.4498 5.2614 12 7 3.1839 3.2477 6.1438 13 14 1.1641 4.9810 5.3712 14 1 -0.0210 4.7002 6.2209 15 1 1.9511 6.0889 5.9698 16 1 0.7161 5.3711 4.0103 17 6 2.7041 -1.8445 1.0755 18 8 3.0086 -2.2581 -0.0263 19 6 3.0862 -2.6073 2.2830 20 6 3.7393 -3.8343 2.1421 21 6 4.0897 -4.5463 3.2588 22 6 3.7868 -4.0068 4.5133 23 7 3.9873 -4.4264 5.7852 24 6 3.5089 -3.5389 6.6205 25 8 3.5438 -3.6441 7.9677 26 7 2.9700 -2.4925 5.9313 27 1 2.5512 -1.7064 6.3154 28 6 3.1309 -2.7591 4.5843 29 7 2.8076 -2.1119 3.4830 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 0.9013 0.5413 2.4745 38 1 1.5550 -0.9333 3.2273 39 1 3.8237 -0.0293 3.1383 40 1 3.2564 1.3977 2.2383 41 1 4.0534 1.1632 5.8358 42 1 2.3468 0.9335 6.2864 43 1 3.2129 -0.3439 5.3996 44 1 3.3351 3.8938 6.8513 45 1 3.9630 -4.2210 1.1588 46 1 4.5915 -5.4988 3.1727 47 1 2.7717 -4.0850 8.3480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725731800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:30 Heat of formation + Delta-G solvation = 47.757820 kcal Electronic energy + Delta-G solvation = -32286.169236 eV Core-core repulsion = 28085.853047 eV Total energy + Delta-G solvation = -4200.316189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.54578 -41.47287 -39.60298 -38.22222 -37.87896 -36.90030 -35.02769 -33.85959 -33.00159 -32.25879 -30.50717 -29.68511 -28.05629 -27.88067 -25.85388 -25.21588 -24.54267 -22.89335 -22.76515 -22.38229 -20.54719 -20.24656 -19.04353 -18.75573 -18.50947 -18.32317 -17.43983 -17.14908 -16.81376 -16.30990 -16.14852 -15.73073 -15.49639 -15.25300 -15.18245 -14.73540 -14.63172 -14.34412 -14.25679 -14.08787 -13.72641 -13.31036 -13.25616 -13.20376 -13.05989 -12.91153 -12.81254 -12.76991 -12.57687 -12.34358 -12.27767 -12.17219 -11.98101 -11.79806 -11.68137 -11.47326 -11.24403 -10.67066 -10.08847 -10.07069 -9.68571 -9.51788 -8.62151 -7.80636 -5.36967 -0.73448 0.09972 1.00718 1.19852 1.46367 1.47653 1.55924 1.78800 1.92747 2.43641 2.52017 2.74745 3.03764 3.28114 3.32952 3.62327 3.79038 3.89662 3.97540 3.99272 4.17514 4.24450 4.36869 4.47457 4.54328 4.67137 4.70964 4.76438 4.81975 4.85924 4.89165 4.94832 4.97355 4.98681 5.09928 5.17977 5.26567 5.34503 5.38352 5.57100 5.61546 5.64027 5.67303 5.74906 6.31222 6.36463 6.40784 6.45156 6.61258 7.06067 7.17942 7.86791 8.35458 9.20715 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007953 B = 0.005216 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.741047 B = 5366.968281 C = 8437.031233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 C -0.155 4.155 4 N -0.579 5.579 5 C 0.093 3.907 6 C 0.160 3.840 7 N -0.606 5.606 8 C 0.182 3.818 9 C -0.255 4.255 10 H 0.069 0.931 11 C -0.047 4.047 12 N -0.939 5.939 13 Si 0.964 3.036 14 H -0.284 1.284 15 H -0.299 1.299 16 H -0.268 1.268 17 C 0.570 3.430 18 O -0.561 6.561 19 C 0.095 3.905 20 C -0.112 4.112 21 C -0.020 4.020 22 C 0.029 3.971 23 N -0.502 5.502 24 C 0.491 3.509 25 O -0.435 6.435 26 N -0.583 5.583 27 H 0.435 0.565 28 C 0.225 3.775 29 N -0.437 5.437 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.029 0.971 40 H 0.026 0.974 41 H -0.005 1.005 42 H 0.016 0.984 43 H 0.030 0.970 44 H 0.247 0.753 45 H 0.174 0.826 46 H 0.182 0.818 47 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -15.624 -4.638 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.024 3.976 3 C -0.212 4.212 4 N -0.309 5.309 5 C -0.032 4.032 6 C 0.033 3.967 7 N -0.330 5.330 8 C 0.036 3.964 9 C -0.386 4.386 10 H 0.087 0.913 11 C -0.242 4.242 12 N -0.585 5.585 13 Si 0.793 3.207 14 H -0.211 1.211 15 H -0.226 1.226 16 H -0.193 1.193 17 C 0.357 3.643 18 O -0.440 6.440 19 C -0.051 4.051 20 C -0.135 4.135 21 C -0.047 4.047 22 C -0.093 4.093 23 N -0.235 5.235 24 C 0.186 3.814 25 O -0.241 6.241 26 N -0.212 5.212 27 H 0.279 0.721 28 C -0.013 4.013 29 N -0.154 5.154 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.136 0.864 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.191 0.809 46 H 0.200 0.800 47 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -3.500 -15.433 -4.660 16.497 hybrid contribution -0.864 1.614 0.912 2.046 sum -4.364 -13.819 -3.748 14.969 Atomic orbital electron populations 1.22079 0.93381 1.02305 1.03202 1.21276 0.95317 0.93229 0.87783 1.22131 1.00782 0.95336 1.02999 1.48110 1.52556 1.21614 1.08649 1.22812 0.98676 0.99364 0.82315 1.20998 0.94900 0.93414 0.87394 1.43851 1.66570 1.21831 1.00771 1.20588 0.96915 0.91900 0.86955 1.19410 1.16407 0.93124 1.09616 0.91302 1.25893 0.98620 1.00342 0.99357 1.70197 1.33203 1.37034 1.18086 0.85312 0.77925 0.79448 0.78038 1.21098 1.22578 1.19268 1.17938 0.78071 0.80933 0.87332 1.90729 1.56564 1.70146 1.26602 1.20982 0.99749 0.95049 0.89356 1.21670 0.97330 0.93162 1.01385 1.20731 0.96449 1.00902 0.86663 1.20022 1.01717 0.94022 0.93537 1.70657 1.26290 1.27513 0.99057 1.20387 0.92009 0.83368 0.85678 1.84813 1.49241 1.81155 1.08922 1.43544 1.51006 1.22580 1.04106 0.72134 1.18886 1.02511 0.94471 0.85443 1.66949 1.18927 1.32866 0.96608 0.92806 0.89268 0.92535 0.88494 0.93673 0.89260 0.93114 0.91968 0.86386 0.95256 0.95550 0.98698 0.96522 0.95193 0.94389 0.80875 0.80032 0.69557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.26 71.98 0.67 -2.76 16 2 C 0.13 3.41 3.22 44.99 0.15 3.56 16 3 C -0.15 -4.22 8.07 71.98 0.58 -3.64 16 4 N -0.58 -18.11 2.39 -801.17 -1.91 -20.02 16 5 C 0.09 3.24 4.36 86.38 0.38 3.62 16 6 C 0.16 6.66 5.32 86.38 0.46 7.12 16 7 N -0.61 -29.41 2.93 -726.95 -2.13 -31.53 16 8 C 0.18 8.54 8.81 127.77 1.13 9.66 16 9 C -0.26 -13.42 9.55 84.03 0.80 -12.62 16 10 H 0.07 3.51 7.84 -2.91 -0.02 3.48 16 11 C -0.05 -2.55 5.21 84.86 0.44 -2.10 16 12 N -0.94 -54.43 10.81 21.65 0.23 -54.20 16 13 Si 0.96 43.79 29.56 68.60 2.03 45.82 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 C 0.57 18.21 7.57 86.79 0.66 18.87 16 18 O -0.56 -19.14 15.64 -3.90 -0.06 -19.21 16 19 C 0.10 2.81 6.55 41.91 0.27 3.09 16 20 C -0.11 -2.60 9.55 22.34 0.21 -2.39 16 21 C -0.02 -0.43 10.16 22.38 0.23 -0.20 16 22 C 0.03 0.77 7.24 39.70 0.29 1.06 16 23 N -0.50 -13.10 11.30 -306.05 -3.46 -16.55 16 24 C 0.49 11.40 9.39 179.70 1.69 13.09 16 25 O -0.44 -7.14 13.62 -84.51 -1.15 -8.29 16 26 N -0.58 -15.14 5.48 -307.04 -1.68 -16.83 16 27 H 0.43 11.20 7.20 -92.71 -0.67 10.53 16 28 C 0.22 6.56 7.69 134.00 1.03 7.59 16 29 N -0.44 -13.64 4.31 -181.67 -0.78 -14.42 16 30 H 0.05 1.32 6.93 -2.39 -0.02 1.30 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.10 2.65 6.91 -2.39 -0.02 2.64 16 34 H 0.04 1.34 7.89 -2.39 -0.02 1.32 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.60 6.79 -2.38 -0.02 1.58 16 37 H 0.06 2.25 6.43 -2.38 -0.02 2.24 16 38 H 0.12 4.18 4.95 -20.56 -0.10 4.08 16 39 H 0.03 1.25 6.79 -2.39 -0.02 1.23 16 40 H 0.03 1.16 6.22 -2.39 -0.01 1.14 16 41 H -0.01 -0.29 7.20 -2.39 -0.02 -0.30 16 42 H 0.02 0.80 7.64 -2.39 -0.02 0.78 16 43 H 0.03 1.18 4.12 -2.39 -0.01 1.17 16 44 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.17 3.37 7.61 -2.91 -0.02 3.35 16 46 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 47 H 0.44 1.75 9.06 -74.06 -0.67 1.08 16 Total: -1.00 -70.84 373.67 -0.31 -71.15 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.38 Total: 20.15 kcal Atomic # 6 Polarization: 34.97 SS G_CDS: 8.98 Total: 43.94 kcal Atomic # 7 Polarization: -143.83 SS G_CDS: -9.73 Total: -153.56 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.21 Total: -27.50 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.84 -0.31 -71.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725731800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.908 kcal (2) G-P(sol) polarization free energy of solvation -70.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds