Wall clock time and date at job start Wed Apr 1 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47596 * 2 1 4 4 N 1.46499 * 109.47294 * 120.00240 * 2 1 3 5 5 C 1.36939 * 119.99686 * 301.90012 * 4 2 1 6 6 H 1.08004 * 119.99921 * 324.85791 * 5 4 2 7 7 C 1.38809 * 120.00318 * 144.85796 * 5 4 2 8 8 N 1.31625 * 120.00326 * 157.16189 * 7 5 4 9 9 Si 1.86802 * 120.00017 * 337.16665 * 7 5 4 10 10 H 1.48498 * 109.47561 * 95.35022 * 9 7 5 11 11 H 1.48498 * 109.47465 * 215.35572 * 9 7 5 12 12 H 1.48500 * 109.46877 * 335.35319 * 9 7 5 13 13 C 1.46498 * 120.00476 * 121.89726 * 4 2 1 14 14 C 1.53000 * 109.47396 * 90.00134 * 13 4 2 15 15 C 1.52997 * 109.47168 * 180.02562 * 14 13 4 16 16 N 1.46499 * 109.46967 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00127 * 180.02562 * 16 15 14 18 18 O 1.21599 * 120.00052 * 359.97438 * 17 16 15 19 19 C 1.47540 * 119.99919 * 180.02562 * 17 16 15 20 20 C 1.46401 * 120.25733 * 359.97438 * 19 17 16 21 21 C 1.35593 * 119.11073 * 180.02562 * 20 19 17 22 22 C 1.41178 * 119.48098 * 0.28169 * 21 20 19 23 23 N 1.32057 * 132.79366 * 179.67884 * 22 21 20 24 24 N 1.28592 * 109.72277 * 180.02562 * 23 22 21 25 25 C 1.31104 * 110.34725 * 359.36575 * 24 23 22 26 26 O 1.35686 * 126.33192 * 179.97438 * 25 24 23 27 27 N 1.36533 * 107.32865 * 0.72111 * 25 24 23 28 28 C 1.36025 * 133.10687 * 179.17417 * 27 25 24 29 29 H 1.08998 * 109.46749 * 305.33306 * 1 2 3 30 30 H 1.09005 * 109.47137 * 65.32662 * 1 2 3 31 31 H 1.09003 * 109.47183 * 185.32791 * 1 2 3 32 32 H 1.09003 * 109.46883 * 239.99458 * 2 1 3 33 33 H 1.08996 * 109.46961 * 175.19231 * 3 2 1 34 34 H 1.09006 * 109.46339 * 295.18746 * 3 2 1 35 35 H 1.08996 * 109.46909 * 55.18330 * 3 2 1 36 36 H 0.96996 * 120.00027 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46853 * 330.00059 * 13 4 2 38 38 H 1.09005 * 109.47032 * 210.00175 * 13 4 2 39 39 H 1.08997 * 109.46653 * 59.99599 * 14 13 4 40 40 H 1.09003 * 109.46760 * 300.00449 * 14 13 4 41 41 H 1.09000 * 109.46985 * 59.99984 * 15 14 13 42 42 H 1.08989 * 109.47422 * 299.99915 * 15 14 13 43 43 H 0.96999 * 120.00172 * 0.02562 * 16 15 14 44 44 H 1.08003 * 120.44061 * 0.02562 * 20 19 17 45 45 H 1.07998 * 120.26159 * 179.97438 * 21 20 19 46 46 H 0.96705 * 113.99644 * 270.90212 * 26 25 24 47 47 H 1.08003 * 119.79129 * 0.02947 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6557 -0.2459 2.4395 6 1 1.5323 0.8118 2.6199 7 6 1.4467 -1.1544 3.4679 8 7 1.5442 -0.7639 4.7211 9 14 1.0272 -2.9315 3.0735 10 1 2.2671 -3.7485 3.0905 11 1 0.0769 -3.4529 4.0885 12 1 0.4039 -3.0059 1.7277 13 6 2.8946 -1.8570 1.0622 14 6 4.3543 -1.3989 1.0431 15 6 5.2693 -2.6170 0.9026 16 7 6.6669 -2.1783 0.8837 17 6 7.6565 -3.0856 0.7661 18 8 7.3894 -4.2685 0.6761 19 6 9.0641 -2.6438 0.7477 20 6 9.3922 -1.2211 0.8563 21 6 10.6935 -0.8409 0.8363 22 6 11.7017 -1.8205 0.7057 23 7 13.0193 -1.7502 0.6516 24 7 13.5121 -2.9314 0.5266 25 6 12.5535 -3.8255 0.5065 26 8 12.7088 -5.1681 0.3865 27 7 11.3691 -3.1544 0.6116 28 6 10.0703 -3.5581 0.6291 29 1 -0.3633 0.5943 0.8384 30 1 -0.3634 0.4290 -0.9339 31 1 -0.3634 -1.0232 0.0954 32 1 1.8933 -0.5139 -0.8900 33 1 3.1266 1.4435 0.0861 34 1 1.7488 1.9307 -0.9300 35 1 1.6081 1.9806 0.8437 36 1 1.3978 -1.3987 5.4397 37 1 2.6654 -2.3788 0.1330 38 1 2.7358 -2.5295 1.9052 39 1 4.5833 -0.8771 1.9722 40 1 4.5130 -0.7264 0.2001 41 1 5.0399 -3.1384 -0.0268 42 1 5.1107 -3.2898 1.7452 43 1 6.8801 -1.2348 0.9559 44 1 8.6081 -0.4844 0.9510 45 1 10.9566 0.2036 0.9147 46 1 12.7182 -5.4828 -0.5278 47 1 9.8339 -4.6089 0.5489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732013763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:25 Heat of formation + Delta-G solvation = 64.249374 kcal Electronic energy + Delta-G solvation = -29657.142060 eV Core-core repulsion = 25457.540998 eV Total energy + Delta-G solvation = -4199.601062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.05498 -40.24240 -38.37286 -37.98549 -37.19547 -35.43257 -34.29671 -32.71315 -32.11698 -31.52651 -29.48389 -29.39643 -26.39729 -26.15407 -24.64919 -24.24354 -23.29230 -23.04101 -21.47767 -21.23959 -19.86362 -19.49569 -18.66887 -17.74613 -17.55221 -17.09841 -16.61442 -15.92650 -15.80247 -15.44934 -15.35219 -15.16769 -14.89996 -14.30912 -14.09789 -13.94845 -13.44876 -13.13913 -13.08182 -12.95358 -12.71224 -12.43634 -12.27900 -12.19377 -11.99232 -11.90699 -11.67618 -11.46286 -11.29919 -10.98027 -10.90423 -10.81471 -10.56814 -10.50357 -10.30098 -10.08761 -10.00263 -9.75997 -9.45210 -9.21408 -8.68894 -8.54642 -6.93464 -6.04337 -3.43543 -0.09404 0.25837 1.27887 1.78798 2.41019 2.79209 3.03009 3.17128 3.25526 3.43982 3.46850 3.53937 3.89834 3.91535 4.22531 4.30032 4.46643 4.67593 4.76581 4.95591 5.20921 5.25671 5.26916 5.34247 5.38230 5.42058 5.60500 5.68010 5.72556 5.89948 5.92495 5.93555 6.05760 6.10496 6.20837 6.25513 6.34548 6.47521 6.56665 6.63055 6.65373 6.67455 6.79127 7.02050 7.08558 7.23637 7.87359 7.88990 7.99535 8.33438 8.93936 9.67320 10.06139 11.11339 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002085 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.897348 B =13424.210956 C =13982.068874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.601 5.601 5 C -0.260 4.260 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.286 1.286 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.142 3.858 14 C -0.147 4.147 15 C 0.116 3.884 16 N -0.710 5.710 17 C 0.566 3.434 18 O -0.536 6.536 19 C -0.149 4.149 20 C -0.063 4.063 21 C -0.078 4.078 22 C 0.215 3.785 23 N -0.269 5.269 24 N -0.237 5.237 25 C 0.323 3.677 26 O -0.426 6.426 27 N -0.406 5.406 28 C 0.139 3.861 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.263 0.737 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.402 0.598 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.408 0.592 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.875 -2.129 -12.385 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.323 5.323 5 C -0.388 4.388 6 H 0.099 0.901 7 C -0.166 4.166 8 N -0.542 5.542 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.232 1.232 12 H -0.195 1.195 13 C 0.015 3.985 14 C -0.187 4.187 15 C -0.007 4.007 16 N -0.361 5.361 17 C 0.351 3.649 18 O -0.414 6.414 19 C -0.157 4.157 20 C -0.087 4.087 21 C -0.099 4.099 22 C -0.035 4.035 23 N -0.116 5.116 24 N -0.086 5.086 25 C 0.023 3.977 26 O -0.225 6.225 27 N -0.098 5.098 28 C 0.015 3.985 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.238 0.762 44 H 0.176 0.824 45 H 0.187 0.813 46 H 0.265 0.735 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 17.237 -2.653 -11.715 21.009 hybrid contribution -1.444 -1.401 -0.401 2.051 sum 15.792 -4.054 -12.115 20.313 Atomic orbital electron populations 1.22121 0.97629 1.01389 0.99991 1.20400 0.92538 0.92237 0.88847 1.22157 1.00623 0.98328 1.00069 1.44240 1.52320 1.33100 1.02620 1.18675 1.42627 0.93158 0.84356 0.90134 1.25408 0.98486 0.97651 0.95068 1.69865 1.50301 1.35455 0.98567 0.87011 0.77827 0.86756 0.77919 1.21434 1.23199 1.19452 1.21073 0.87873 0.90375 0.99171 1.22458 0.97178 0.96133 1.02979 1.21607 0.78124 0.98638 1.02314 1.45980 1.06919 1.10158 1.73028 1.17547 0.83901 0.85999 0.77407 1.90838 1.84017 1.16429 1.50165 1.20652 0.93916 0.93397 1.07688 1.22345 0.96776 0.93851 0.95771 1.20234 0.89002 0.98853 1.01794 1.22183 0.94507 0.82289 1.04543 1.74975 1.02755 1.13242 1.20649 1.74567 1.23209 0.95009 1.15858 1.21892 0.79998 0.86652 1.09174 1.85034 1.92498 1.11312 1.33666 1.44031 1.06933 1.10034 1.48844 1.21769 0.79469 1.01697 0.95542 0.92068 0.94476 0.93475 0.93282 0.93475 0.94377 0.92455 0.92755 0.94073 0.92737 0.90339 0.92013 0.91397 0.91110 0.76244 0.82446 0.81283 0.73462 0.79657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.04 37.16 0.34 -2.35 16 2 C 0.17 2.96 3.36 -67.93 -0.23 2.73 16 3 C -0.15 -2.47 9.11 37.16 0.34 -2.13 16 4 N -0.60 -12.62 2.06 -165.66 -0.34 -12.96 16 5 C -0.26 -6.57 8.74 -15.06 -0.13 -6.70 16 6 H 0.08 2.23 7.17 -52.48 -0.38 1.85 16 7 C 0.03 0.92 5.31 -17.43 -0.09 0.83 16 8 N -0.90 -26.16 13.97 55.49 0.78 -25.39 16 9 Si 0.87 21.19 24.97 -169.99 -4.24 16.95 16 10 H -0.29 -6.73 6.66 56.52 0.38 -6.35 16 11 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.14 2.68 4.49 -4.04 -0.02 2.67 16 14 C -0.15 -2.23 5.65 -26.73 -0.15 -2.38 16 15 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 16 N -0.71 -7.64 5.52 -61.35 -0.34 -7.98 16 17 C 0.57 6.52 7.77 -12.47 -0.10 6.42 16 18 O -0.54 -8.05 16.30 5.28 0.09 -7.96 16 19 C -0.15 -1.32 5.98 -103.46 -0.62 -1.94 16 20 C -0.06 -0.40 9.73 -37.24 -0.36 -0.76 16 21 C -0.08 -0.54 10.09 -39.41 -0.40 -0.94 16 22 C 0.21 2.18 7.91 -155.70 -1.23 0.95 16 23 N -0.27 -3.34 12.28 31.26 0.38 -2.96 16 24 N -0.24 -2.96 12.19 29.73 0.36 -2.60 16 25 C 0.32 3.30 9.39 -88.49 -0.83 2.47 16 26 O -0.43 -3.14 13.65 -18.76 -0.26 -3.39 16 27 N -0.41 -3.95 2.96 -63.67 -0.19 -4.14 16 28 C 0.14 1.23 10.54 -16.33 -0.17 1.06 16 29 H 0.06 1.17 7.80 -51.93 -0.40 0.77 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.78 7.78 -51.93 -0.40 0.38 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 1.03 7.25 -51.93 -0.38 0.65 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.04 0.70 7.90 -51.93 -0.41 0.29 16 38 H 0.05 1.18 2.98 -51.93 -0.15 1.02 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.10 8.14 -51.94 -0.42 0.68 16 43 H 0.40 3.19 6.57 -40.82 -0.27 2.92 16 44 H 0.16 0.57 6.58 -52.48 -0.35 0.22 16 45 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.41 0.72 9.06 45.56 0.41 1.14 16 47 H 0.19 1.47 7.58 -52.48 -0.40 1.07 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -34.36 389.72 -7.26 -41.62 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.69 Total: 1.47 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.68 Total: 1.47 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.65 Total: -56.02 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.17 Total: -11.35 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.24 Total: 16.95 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.36 -7.26 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732013763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.865 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds