Wall clock time and date at job start Wed Apr 1 2020 05:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47596 * 2 1 4 4 N 1.46499 * 109.47294 * 120.00240 * 2 1 3 5 5 C 1.36939 * 119.99686 * 301.90012 * 4 2 1 6 6 H 1.08004 * 119.99921 * 324.85791 * 5 4 2 7 7 C 1.38809 * 120.00318 * 144.85796 * 5 4 2 8 8 N 1.31625 * 120.00326 * 157.16189 * 7 5 4 9 9 Si 1.86802 * 120.00017 * 337.16665 * 7 5 4 10 10 H 1.48498 * 109.47561 * 95.35022 * 9 7 5 11 11 H 1.48498 * 109.47465 * 215.35572 * 9 7 5 12 12 H 1.48500 * 109.46877 * 335.35319 * 9 7 5 13 13 C 1.46498 * 120.00476 * 121.89726 * 4 2 1 14 14 C 1.53000 * 109.47396 * 90.00134 * 13 4 2 15 15 C 1.52997 * 109.47168 * 180.02562 * 14 13 4 16 16 N 1.46499 * 109.46967 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00127 * 180.02562 * 16 15 14 18 18 O 1.21599 * 120.00052 * 359.97438 * 17 16 15 19 19 C 1.47540 * 119.99919 * 180.02562 * 17 16 15 20 20 C 1.46401 * 120.25733 * 359.97438 * 19 17 16 21 21 C 1.35593 * 119.11073 * 180.02562 * 20 19 17 22 22 C 1.41178 * 119.48098 * 0.28169 * 21 20 19 23 23 N 1.32057 * 132.79366 * 179.67884 * 22 21 20 24 24 N 1.28592 * 109.72277 * 180.02562 * 23 22 21 25 25 C 1.31104 * 110.34725 * 359.36575 * 24 23 22 26 26 O 1.35686 * 126.33192 * 179.97438 * 25 24 23 27 27 N 1.36533 * 107.32865 * 0.72111 * 25 24 23 28 28 C 1.36025 * 133.10687 * 179.17417 * 27 25 24 29 29 H 1.08998 * 109.46749 * 305.33306 * 1 2 3 30 30 H 1.09005 * 109.47137 * 65.32662 * 1 2 3 31 31 H 1.09003 * 109.47183 * 185.32791 * 1 2 3 32 32 H 1.09003 * 109.46883 * 239.99458 * 2 1 3 33 33 H 1.08996 * 109.46961 * 175.19231 * 3 2 1 34 34 H 1.09006 * 109.46339 * 295.18746 * 3 2 1 35 35 H 1.08996 * 109.46909 * 55.18330 * 3 2 1 36 36 H 0.96996 * 120.00027 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46853 * 330.00059 * 13 4 2 38 38 H 1.09005 * 109.47032 * 210.00175 * 13 4 2 39 39 H 1.08997 * 109.46653 * 59.99599 * 14 13 4 40 40 H 1.09003 * 109.46760 * 300.00449 * 14 13 4 41 41 H 1.09000 * 109.46985 * 59.99984 * 15 14 13 42 42 H 1.08989 * 109.47422 * 299.99915 * 15 14 13 43 43 H 0.96999 * 120.00172 * 0.02562 * 16 15 14 44 44 H 1.08003 * 120.44061 * 0.02562 * 20 19 17 45 45 H 1.07998 * 120.26159 * 179.97438 * 21 20 19 46 46 H 0.96705 * 113.99644 * 270.90212 * 26 25 24 47 47 H 1.08003 * 119.79129 * 0.02947 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6557 -0.2459 2.4395 6 1 1.5323 0.8118 2.6199 7 6 1.4467 -1.1544 3.4679 8 7 1.5442 -0.7639 4.7211 9 14 1.0272 -2.9315 3.0735 10 1 2.2671 -3.7485 3.0905 11 1 0.0769 -3.4529 4.0885 12 1 0.4039 -3.0059 1.7277 13 6 2.8946 -1.8570 1.0622 14 6 4.3543 -1.3989 1.0431 15 6 5.2693 -2.6170 0.9026 16 7 6.6669 -2.1783 0.8837 17 6 7.6565 -3.0856 0.7661 18 8 7.3894 -4.2685 0.6761 19 6 9.0641 -2.6438 0.7477 20 6 9.3922 -1.2211 0.8563 21 6 10.6935 -0.8409 0.8363 22 6 11.7017 -1.8205 0.7057 23 7 13.0193 -1.7502 0.6516 24 7 13.5121 -2.9314 0.5266 25 6 12.5535 -3.8255 0.5065 26 8 12.7088 -5.1681 0.3865 27 7 11.3691 -3.1544 0.6116 28 6 10.0703 -3.5581 0.6291 29 1 -0.3633 0.5943 0.8384 30 1 -0.3634 0.4290 -0.9339 31 1 -0.3634 -1.0232 0.0954 32 1 1.8933 -0.5139 -0.8900 33 1 3.1266 1.4435 0.0861 34 1 1.7488 1.9307 -0.9300 35 1 1.6081 1.9806 0.8437 36 1 1.3978 -1.3987 5.4397 37 1 2.6654 -2.3788 0.1330 38 1 2.7358 -2.5295 1.9052 39 1 4.5833 -0.8771 1.9722 40 1 4.5130 -0.7264 0.2001 41 1 5.0399 -3.1384 -0.0268 42 1 5.1107 -3.2898 1.7452 43 1 6.8801 -1.2348 0.9559 44 1 8.6081 -0.4844 0.9510 45 1 10.9566 0.2036 0.9147 46 1 12.7182 -5.4828 -0.5278 47 1 9.8339 -4.6089 0.5489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732013763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:24 Heat of formation + Delta-G solvation = 37.980192 kcal Electronic energy + Delta-G solvation = -29658.281177 eV Core-core repulsion = 25457.540998 eV Total energy + Delta-G solvation = -4200.740179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.78911 -41.14415 -39.05614 -38.81708 -38.59419 -36.53088 -34.98982 -34.27381 -33.54607 -32.49903 -30.85338 -30.19506 -27.74467 -27.43164 -25.92440 -24.92368 -24.67913 -23.74657 -22.70691 -22.14452 -21.12568 -20.55093 -19.43021 -18.51387 -18.36561 -18.27213 -17.80220 -17.28664 -16.89421 -16.59805 -16.41462 -16.05877 -15.92327 -15.45839 -15.17417 -14.88589 -14.73842 -14.67386 -14.07509 -13.99206 -13.73692 -13.69046 -13.49124 -13.44616 -13.27651 -12.87139 -12.85502 -12.61555 -12.55166 -12.31297 -12.27656 -12.13958 -11.97378 -11.71400 -11.65206 -11.41017 -11.30194 -11.14619 -10.85597 -10.51509 -10.19069 -9.36662 -8.70756 -8.11694 -5.44397 -0.79076 -0.35464 0.57738 1.03891 1.31885 1.44879 1.52757 1.63951 1.93618 2.27989 2.46761 2.50721 2.90483 3.10606 3.22158 3.31556 3.38464 3.52864 3.63102 4.01524 4.11528 4.23149 4.33964 4.35144 4.43189 4.56544 4.60073 4.63050 4.71383 4.75764 4.79232 4.82289 4.88466 4.99820 5.09390 5.13301 5.19533 5.24009 5.27362 5.32096 5.34713 5.49116 5.62087 5.68983 6.04432 6.21336 6.30021 6.38435 7.01436 7.09838 7.12456 7.76513 8.15500 9.08510 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002085 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.897348 B =13424.210956 C =13982.068874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 C -0.144 4.144 4 N -0.611 5.611 5 C -0.225 4.225 6 H 0.049 0.951 7 C -0.023 4.023 8 N -0.952 5.952 9 Si 0.930 3.070 10 H -0.278 1.278 11 H -0.323 1.323 12 H -0.259 1.259 13 C 0.131 3.869 14 C -0.128 4.128 15 C 0.126 3.874 16 N -0.700 5.700 17 C 0.570 3.430 18 O -0.574 6.574 19 C -0.150 4.150 20 C -0.047 4.047 21 C -0.078 4.078 22 C 0.210 3.790 23 N -0.304 5.304 24 N -0.271 5.271 25 C 0.328 3.672 26 O -0.429 6.429 27 N -0.409 5.409 28 C 0.139 3.861 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.257 0.743 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.418 0.582 44 H 0.192 0.808 45 H 0.198 0.802 46 H 0.431 0.569 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.225 -1.768 -15.202 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.052 3.948 3 C -0.203 4.203 4 N -0.334 5.334 5 C -0.355 4.355 6 H 0.066 0.934 7 C -0.219 4.219 8 N -0.598 5.598 9 Si 0.761 3.239 10 H -0.206 1.206 11 H -0.253 1.253 12 H -0.183 1.183 13 C 0.005 3.995 14 C -0.169 4.169 15 C 0.002 3.998 16 N -0.351 5.351 17 C 0.357 3.643 18 O -0.455 6.455 19 C -0.157 4.157 20 C -0.072 4.072 21 C -0.099 4.099 22 C -0.040 4.040 23 N -0.150 5.150 24 N -0.120 5.120 25 C 0.027 3.973 26 O -0.231 6.231 27 N -0.101 5.101 28 C 0.015 3.985 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.256 0.744 44 H 0.209 0.791 45 H 0.215 0.785 46 H 0.293 0.707 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 17.625 -2.277 -14.610 23.006 hybrid contribution -1.577 -1.481 0.368 2.195 sum 16.048 -3.758 -14.243 21.783 Atomic orbital electron populations 1.22089 0.97689 1.00247 1.00767 1.20699 0.92600 0.93125 0.88396 1.22050 1.00679 0.97051 1.00532 1.44407 1.53252 1.33644 1.02125 1.18516 1.39419 0.91610 0.85976 0.93384 1.25900 1.00043 1.00964 0.94949 1.69986 1.53796 1.36502 0.99519 0.86090 0.77332 0.83135 0.77329 1.20602 1.25253 1.18294 1.21189 0.89725 0.89335 0.99228 1.22151 0.94994 0.96784 1.02925 1.21315 0.79287 0.97397 1.01817 1.45761 1.05763 1.11040 1.72575 1.17786 0.84776 0.85381 0.76398 1.90827 1.84695 1.18093 1.51907 1.20489 0.92229 0.94746 1.08274 1.22641 0.97404 0.93005 0.94105 1.20620 0.88309 0.99551 1.01419 1.22724 0.94487 0.83053 1.03726 1.74875 1.04059 1.13513 1.22524 1.74467 1.24401 0.95634 1.17497 1.21943 0.79938 0.87286 1.08154 1.84993 1.92345 1.09810 1.35993 1.44070 1.06999 1.10021 1.48996 1.21874 0.79198 1.02163 0.95282 0.94788 0.90904 0.94863 0.90065 0.92953 0.91144 0.95335 0.93367 0.91404 0.95555 0.92601 0.89336 0.90440 0.93528 0.74364 0.79134 0.78458 0.70673 0.79174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.04 71.98 0.65 -4.25 16 2 C 0.16 5.07 3.36 44.99 0.15 5.22 16 3 C -0.14 -4.22 9.11 71.98 0.66 -3.57 16 4 N -0.61 -24.57 2.06 -678.03 -1.40 -25.96 16 5 C -0.22 -11.46 8.74 84.03 0.73 -10.73 16 6 H 0.05 2.75 7.17 -2.91 -0.02 2.72 16 7 C -0.02 -1.28 5.31 84.86 0.45 -0.83 16 8 N -0.95 -57.33 13.97 21.65 0.30 -57.03 16 9 Si 0.93 44.54 24.97 68.60 1.71 46.26 16 10 H -0.28 -12.78 6.66 99.48 0.66 -12.12 16 11 H -0.32 -16.29 7.11 99.48 0.71 -15.58 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.13 4.63 4.49 86.38 0.39 5.01 16 14 C -0.13 -3.53 5.65 30.59 0.17 -3.36 16 15 C 0.13 3.09 5.67 86.38 0.49 3.58 16 16 N -0.70 -12.97 5.52 -466.28 -2.57 -15.54 16 17 C 0.57 11.83 7.77 86.70 0.67 12.50 16 18 O -0.57 -16.46 16.30 -4.03 -0.07 -16.52 16 19 C -0.15 -2.28 5.98 -19.11 -0.11 -2.39 16 20 C -0.05 -0.44 9.73 23.78 0.23 -0.20 16 21 C -0.08 -0.86 10.09 22.38 0.23 -0.64 16 22 C 0.21 3.99 7.91 134.08 1.06 5.05 16 23 N -0.30 -7.44 12.28 -55.01 -0.68 -8.12 16 24 N -0.27 -6.80 12.19 -173.28 -2.11 -8.91 16 25 C 0.33 6.53 9.39 179.61 1.69 8.21 16 26 O -0.43 -5.91 13.65 -90.04 -1.23 -7.14 16 27 N -0.41 -7.48 2.96 -465.96 -1.38 -8.85 16 28 C 0.14 2.24 10.54 83.63 0.88 3.12 16 29 H 0.03 1.27 7.80 -2.39 -0.02 1.25 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 2.16 7.78 -2.39 -0.02 2.15 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.03 0.98 7.25 -2.39 -0.02 0.96 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.07 2.05 7.90 -2.39 -0.02 2.03 16 38 H 0.03 1.10 2.98 -2.38 -0.01 1.09 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.42 4.98 6.57 -92.71 -0.61 4.37 16 44 H 0.19 0.43 6.58 -2.91 -0.02 0.41 16 45 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.43 0.99 9.06 -74.05 -0.67 0.32 16 47 H 0.19 2.80 7.58 -2.91 -0.02 2.78 16 Total: -1.00 -78.26 389.72 0.63 -77.63 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -0.30 Total: 7.45 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 8.34 Total: 16.74 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -7.83 Total: -124.42 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.29 Total: -23.67 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.71 Total: 46.26 kcal Total: -78.26 0.63 -77.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732013763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.615 kcal (2) G-P(sol) polarization free energy of solvation -78.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds