Wall clock time and date at job start Wed Apr 1 2020 05:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47318 * 2 1 4 4 H 1.09004 * 109.46537 * 54.36956 * 3 2 1 5 5 C 1.52998 * 109.47267 * 294.36895 * 3 2 1 6 6 N 1.46493 * 109.47095 * 184.99707 * 5 3 2 7 7 C 1.34780 * 120.00003 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99733 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00285 * 180.02562 * 7 6 5 10 10 H 1.09004 * 110.01261 * 59.29839 * 9 7 6 11 11 C 1.54271 * 110.02963 * 297.90802 * 9 7 6 12 12 C 1.54959 * 104.15795 * 217.13175 * 11 9 7 13 13 C 1.54894 * 102.77670 * 37.89479 * 12 11 9 14 14 F 1.39904 * 110.48400 * 203.40432 * 13 12 11 15 15 F 1.39896 * 110.49088 * 80.75963 * 13 12 11 16 16 C 1.53874 * 110.03379 * 180.69098 * 9 7 6 17 17 N 1.46897 * 109.47383 * 174.36641 * 3 2 1 18 18 C 1.46905 * 111.00239 * 273.39202 * 17 3 2 19 19 C 1.50699 * 109.47030 * 174.78306 * 18 17 3 20 20 O 1.21287 * 120.00239 * 359.97438 * 19 18 17 21 21 N 1.34784 * 119.99541 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99503 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00082 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99428 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00604 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99810 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47258 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47369 * 119.99543 * 26 24 22 29 29 H 1.48501 * 109.47369 * 239.99769 * 26 24 22 30 30 H 1.08999 * 109.46966 * 65.80810 * 1 2 3 31 31 H 1.09000 * 109.46784 * 185.80669 * 1 2 3 32 32 H 1.09000 * 109.46712 * 305.80765 * 1 2 3 33 33 H 1.09003 * 109.47477 * 240.00093 * 2 1 3 34 34 H 1.08997 * 109.47286 * 119.99985 * 2 1 3 35 35 H 1.08996 * 109.47110 * 305.00100 * 5 3 2 36 36 H 1.08997 * 109.47013 * 64.99443 * 5 3 2 37 37 H 0.97002 * 120.00557 * 359.97438 * 6 5 3 38 38 H 1.08997 * 110.48791 * 335.78323 * 11 9 7 39 39 H 1.09006 * 110.48015 * 98.42798 * 11 9 7 40 40 H 1.09002 * 110.72712 * 279.57562 * 12 11 9 41 41 H 1.09004 * 110.92017 * 156.29609 * 12 11 9 42 42 H 1.09001 * 110.03094 * 238.57019 * 16 9 7 43 43 H 1.09001 * 110.03083 * 359.94985 * 16 9 7 44 44 H 1.00896 * 111.00330 * 149.43172 * 17 3 2 45 45 H 1.09001 * 109.46363 * 294.78237 * 18 17 3 46 46 H 1.08998 * 109.47143 * 54.77419 * 18 17 3 47 47 H 0.96999 * 120.00246 * 0.02562 * 21 19 18 48 48 H 0.97001 * 120.00387 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 0.8353 5 6 1.6490 2.1218 -1.3140 6 7 2.2383 3.4620 -1.3651 7 6 2.0274 4.2504 -2.4377 8 8 1.3492 3.8505 -3.3603 9 6 2.6341 5.6289 -2.4907 10 1 3.7197 5.5616 -2.4190 11 6 2.0810 6.4942 -1.3396 12 6 1.9370 7.9060 -1.9621 13 6 1.4520 7.5982 -3.4006 14 9 1.7638 8.6576 -4.2595 15 9 0.0757 7.3473 -3.4101 16 6 2.2348 6.3306 -3.8006 17 7 3.5027 1.4448 0.1360 18 6 3.9002 1.4093 1.5498 19 6 5.3987 1.2834 1.6473 20 8 6.0696 1.2282 0.6384 21 7 5.9934 1.2322 2.8558 22 6 7.3567 1.1172 2.9445 23 1 7.9540 1.0681 2.0461 24 6 7.9696 1.0639 4.1903 25 7 7.2429 1.1242 5.2834 26 14 9.8272 0.9079 4.3113 27 1 10.4099 0.8605 2.9463 28 1 10.3755 2.0776 5.0437 29 1 10.1728 -0.3389 5.0401 30 1 -0.3633 0.4211 -0.9374 31 1 -0.3633 -1.0224 0.1040 32 1 -0.3633 0.6013 0.8334 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0173 1.5306 -2.1523 36 1 0.5634 2.1997 -1.3736 37 1 2.7804 3.7820 -0.6271 38 1 1.1104 6.1204 -1.0136 39 1 2.7830 6.5138 -0.5059 40 1 2.8984 8.4195 -1.9801 41 1 1.1959 8.4956 -1.4224 42 1 3.1266 6.6047 -4.3642 43 1 1.6029 5.6737 -4.3984 44 1 3.9084 2.2402 -0.3338 45 1 3.5800 2.3285 2.0402 46 1 3.4312 0.5549 2.0377 47 1 5.4568 1.2760 3.6626 48 1 7.6708 1.0874 6.1531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732201282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:58 Heat of formation + Delta-G solvation = -190.102535 kcal Electronic energy + Delta-G solvation = -30834.213706 eV Core-core repulsion = 26172.893932 eV Total energy + Delta-G solvation = -4661.319774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.14854 -47.28184 -40.45103 -38.63774 -37.56670 -36.74721 -34.26724 -33.94647 -32.67825 -31.25797 -29.96712 -29.19428 -27.93341 -26.06934 -24.34792 -23.68689 -22.43453 -21.59946 -20.57288 -20.02338 -19.33962 -18.21024 -17.96642 -17.61883 -17.00834 -16.63346 -16.15213 -16.02458 -15.71782 -15.40012 -14.91583 -14.65961 -14.53227 -14.40105 -14.28716 -13.97827 -13.78989 -13.60062 -13.58032 -13.46216 -13.37404 -12.68894 -12.57734 -12.46295 -12.29982 -12.14316 -11.93399 -11.89616 -11.74258 -11.60360 -11.41720 -11.36542 -11.22873 -11.10675 -10.96827 -10.64005 -10.38650 -10.27633 -10.05660 -9.57349 -9.32367 -8.55913 -8.16762 -8.01968 -6.47262 -3.88182 2.34721 2.80880 3.12192 3.23430 3.30323 3.37271 3.52385 3.66661 3.83752 3.95436 4.03797 4.21273 4.44279 4.48167 4.59434 4.69496 4.72873 4.81240 4.84067 4.99954 5.05238 5.13229 5.19171 5.22938 5.23697 5.30099 5.37630 5.46998 5.51072 5.56287 5.62350 5.65965 5.67989 5.78113 5.82662 5.97908 6.09254 6.12938 6.18777 6.32670 7.06911 7.16423 7.48544 7.50243 7.92320 8.00748 8.55341 9.12649 9.48356 9.99591 10.70432 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.002296 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.367196 B =12192.698415 C =14104.802113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C 0.076 3.924 4 H 0.050 0.950 5 C 0.116 3.884 6 N -0.728 5.728 7 C 0.522 3.478 8 O -0.534 6.534 9 C -0.114 4.114 10 H 0.117 0.883 11 C -0.116 4.116 12 C -0.157 4.157 13 C 0.278 3.722 14 F -0.198 7.198 15 F -0.192 7.192 16 C -0.157 4.157 17 N -0.663 5.663 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.581 6.581 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.400 0.600 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.346 0.654 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.584 10.352 -9.770 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.034 4.034 4 H 0.068 0.932 5 C -0.007 4.007 6 N -0.380 5.380 7 C 0.308 3.692 8 O -0.411 6.411 9 C -0.135 4.135 10 H 0.135 0.865 11 C -0.154 4.154 12 C -0.195 4.195 13 C 0.242 3.758 14 F -0.179 7.179 15 F -0.173 7.173 16 C -0.195 4.195 17 N -0.298 5.298 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.465 6.465 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.520 9.349 -11.034 20.494 hybrid contribution 0.579 1.029 1.337 1.784 sum -13.941 10.378 -9.697 19.902 Atomic orbital electron populations 1.21846 0.95876 1.01876 1.01688 1.21487 0.94680 0.95180 1.03604 1.21856 0.88983 0.96924 0.95626 0.93202 1.21688 0.98551 0.81935 0.98561 1.46008 1.53979 1.16687 1.21321 1.20313 0.80422 0.86571 0.81903 1.90695 1.39195 1.74573 1.36590 1.21879 1.02926 0.92621 0.96099 0.86541 1.22382 1.02927 0.92907 0.97183 1.23470 1.04324 0.99017 0.92651 1.21897 0.77636 0.85804 0.90470 1.93008 1.92615 1.59294 1.72933 1.93028 1.32782 1.94417 1.97080 1.23126 1.02613 0.95291 0.98447 1.60010 1.06484 1.50158 1.13129 1.21756 0.96181 1.01136 0.89240 1.19781 0.88470 0.84739 0.84496 1.90533 1.65173 1.55320 1.35461 1.41879 1.07961 1.63967 1.06241 1.19744 0.82013 1.47070 0.94018 0.87869 1.25260 1.00572 0.97309 0.94783 1.69612 1.36239 1.50513 0.97920 0.85809 0.82240 0.77779 0.78582 1.19199 1.20754 1.20719 0.92635 0.92457 0.92835 0.90878 0.91121 0.90236 0.90541 0.76500 0.89982 0.88751 0.87732 0.88628 0.87893 0.86526 0.83312 0.93876 0.89394 0.77500 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.54 37.16 0.35 -0.96 16 2 C -0.11 -1.17 5.65 -26.73 -0.15 -1.32 16 3 C 0.08 0.82 2.26 -67.71 -0.15 0.67 16 4 H 0.05 0.49 7.83 -51.93 -0.41 0.09 16 5 C 0.12 1.21 4.95 -4.05 -0.02 1.19 16 6 N -0.73 -6.99 4.91 -60.30 -0.30 -7.29 16 7 C 0.52 5.61 7.00 -10.98 -0.08 5.53 16 8 O -0.53 -7.69 15.21 5.56 0.08 -7.60 16 9 C -0.11 -0.88 3.29 -90.65 -0.30 -1.18 16 10 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.12 -0.71 6.30 -25.03 -0.16 -0.87 16 12 C -0.16 -0.98 6.49 -24.70 -0.16 -1.14 16 13 C 0.28 2.51 2.49 -25.07 -0.06 2.45 16 14 F -0.20 -2.01 17.16 2.25 0.04 -1.97 16 15 F -0.19 -2.19 17.17 2.25 0.04 -2.15 16 16 C -0.16 -1.35 6.01 -25.61 -0.15 -1.51 16 17 N -0.66 -9.48 5.84 -107.99 -0.63 -10.11 16 18 C 0.05 0.79 5.93 -4.97 -0.03 0.76 16 19 C 0.44 9.79 7.83 -10.98 -0.09 9.70 16 20 O -0.58 -15.12 15.89 5.55 0.09 -15.03 16 21 N -0.56 -13.65 5.29 -10.96 -0.06 -13.70 16 22 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -23.85 13.05 55.50 0.72 -23.12 16 26 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 30 H 0.05 0.45 6.99 -51.93 -0.36 0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.81 7.41 -51.93 -0.38 0.42 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.77 6.97 -51.93 -0.36 0.41 16 37 H 0.40 3.27 7.39 -40.82 -0.30 2.97 16 38 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.12 1.27 6.37 -51.93 -0.33 0.94 16 44 H 0.35 4.95 6.61 -39.29 -0.26 4.69 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.31 7.38 -51.93 -0.38 0.93 16 47 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 48 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 397.87 15.07 6.00 6.00 Total: -1.00 -32.99 397.87 -7.53 -40.52 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.26 Total: 13.37 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.24 Total: 5.60 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.26 Total: -54.22 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.17 Total: -22.63 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.99 -7.53 -40.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732201282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.584 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds