Wall clock time and date at job start Wed Apr 1 2020 05:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47318 * 2 1 4 4 H 1.09004 * 109.46537 * 54.36956 * 3 2 1 5 5 C 1.52998 * 109.47267 * 294.36895 * 3 2 1 6 6 N 1.46493 * 109.47095 * 184.99707 * 5 3 2 7 7 C 1.34780 * 120.00003 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99733 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00285 * 180.02562 * 7 6 5 10 10 H 1.09004 * 110.01261 * 59.29839 * 9 7 6 11 11 C 1.54271 * 110.02963 * 297.90802 * 9 7 6 12 12 C 1.54959 * 104.15795 * 217.13175 * 11 9 7 13 13 C 1.54894 * 102.77670 * 37.89479 * 12 11 9 14 14 F 1.39904 * 110.48400 * 203.40432 * 13 12 11 15 15 F 1.39896 * 110.49088 * 80.75963 * 13 12 11 16 16 C 1.53874 * 110.03379 * 180.69098 * 9 7 6 17 17 N 1.46897 * 109.47383 * 174.36641 * 3 2 1 18 18 C 1.46905 * 111.00239 * 273.39202 * 17 3 2 19 19 C 1.50699 * 109.47030 * 174.78306 * 18 17 3 20 20 O 1.21287 * 120.00239 * 359.97438 * 19 18 17 21 21 N 1.34784 * 119.99541 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99503 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00082 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99428 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00604 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99810 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47258 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47369 * 119.99543 * 26 24 22 29 29 H 1.48501 * 109.47369 * 239.99769 * 26 24 22 30 30 H 1.08999 * 109.46966 * 65.80810 * 1 2 3 31 31 H 1.09000 * 109.46784 * 185.80669 * 1 2 3 32 32 H 1.09000 * 109.46712 * 305.80765 * 1 2 3 33 33 H 1.09003 * 109.47477 * 240.00093 * 2 1 3 34 34 H 1.08997 * 109.47286 * 119.99985 * 2 1 3 35 35 H 1.08996 * 109.47110 * 305.00100 * 5 3 2 36 36 H 1.08997 * 109.47013 * 64.99443 * 5 3 2 37 37 H 0.97002 * 120.00557 * 359.97438 * 6 5 3 38 38 H 1.08997 * 110.48791 * 335.78323 * 11 9 7 39 39 H 1.09006 * 110.48015 * 98.42798 * 11 9 7 40 40 H 1.09002 * 110.72712 * 279.57562 * 12 11 9 41 41 H 1.09004 * 110.92017 * 156.29609 * 12 11 9 42 42 H 1.09001 * 110.03094 * 238.57019 * 16 9 7 43 43 H 1.09001 * 110.03083 * 359.94985 * 16 9 7 44 44 H 1.00896 * 111.00330 * 149.43172 * 17 3 2 45 45 H 1.09001 * 109.46363 * 294.78237 * 18 17 3 46 46 H 1.08998 * 109.47143 * 54.77419 * 18 17 3 47 47 H 0.96999 * 120.00246 * 0.02562 * 21 19 18 48 48 H 0.97001 * 120.00387 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 0.8353 5 6 1.6490 2.1218 -1.3140 6 7 2.2383 3.4620 -1.3651 7 6 2.0274 4.2504 -2.4377 8 8 1.3492 3.8505 -3.3603 9 6 2.6341 5.6289 -2.4907 10 1 3.7197 5.5616 -2.4190 11 6 2.0810 6.4942 -1.3396 12 6 1.9370 7.9060 -1.9621 13 6 1.4520 7.5982 -3.4006 14 9 1.7638 8.6576 -4.2595 15 9 0.0757 7.3473 -3.4101 16 6 2.2348 6.3306 -3.8006 17 7 3.5027 1.4448 0.1360 18 6 3.9002 1.4093 1.5498 19 6 5.3987 1.2834 1.6473 20 8 6.0696 1.2282 0.6384 21 7 5.9934 1.2322 2.8558 22 6 7.3567 1.1172 2.9445 23 1 7.9540 1.0681 2.0461 24 6 7.9696 1.0639 4.1903 25 7 7.2429 1.1242 5.2834 26 14 9.8272 0.9079 4.3113 27 1 10.4099 0.8605 2.9463 28 1 10.3755 2.0776 5.0437 29 1 10.1728 -0.3389 5.0401 30 1 -0.3633 0.4211 -0.9374 31 1 -0.3633 -1.0224 0.1040 32 1 -0.3633 0.6013 0.8334 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0173 1.5306 -2.1523 36 1 0.5634 2.1997 -1.3736 37 1 2.7804 3.7820 -0.6271 38 1 1.1104 6.1204 -1.0136 39 1 2.7830 6.5138 -0.5059 40 1 2.8984 8.4195 -1.9801 41 1 1.1959 8.4956 -1.4224 42 1 3.1266 6.6047 -4.3642 43 1 1.6029 5.6737 -4.3984 44 1 3.9084 2.2402 -0.3338 45 1 3.5800 2.3285 2.0402 46 1 3.4312 0.5549 2.0377 47 1 5.4568 1.2760 3.6626 48 1 7.6708 1.0874 6.1531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732201282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:57 Heat of formation + Delta-G solvation = -213.879717 kcal Electronic energy + Delta-G solvation = -30835.244762 eV Core-core repulsion = 26172.893932 eV Total energy + Delta-G solvation = -4662.350830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.90745 -48.06099 -41.28873 -40.17892 -38.69856 -37.51384 -35.96335 -35.08499 -33.76235 -33.17775 -30.63109 -29.93792 -28.88042 -27.47037 -25.70699 -24.75709 -23.13801 -22.22418 -21.45117 -21.12282 -20.74649 -19.88835 -18.93682 -18.42557 -17.89695 -17.62538 -17.26029 -16.86012 -16.75423 -16.69988 -16.36143 -15.93070 -15.58695 -15.53554 -15.11400 -15.03882 -14.99205 -14.56773 -14.43302 -14.39127 -14.22362 -13.94570 -13.62612 -13.46508 -13.28677 -13.16960 -12.95955 -12.87215 -12.72599 -12.63826 -12.48356 -12.41828 -12.36165 -12.10470 -12.04183 -11.94233 -11.61288 -11.50187 -11.46973 -10.91424 -10.31038 -10.18840 -9.98313 -9.33320 -8.44760 -5.92704 1.37893 1.43972 1.52542 1.57193 2.02707 2.09124 2.30355 2.73969 2.85311 2.91305 3.04767 3.23232 3.41075 3.49834 3.66729 3.80687 3.91188 4.08007 4.10992 4.17104 4.22346 4.29224 4.32767 4.42760 4.43604 4.48971 4.60486 4.62002 4.71540 4.73209 4.82310 4.84845 4.89481 4.97241 5.01652 5.08923 5.24157 5.29372 5.33666 5.43720 5.49510 5.90025 6.11032 6.38368 6.39566 6.63215 7.11923 7.16032 7.60218 8.15733 8.72686 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.002296 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.367196 B =12192.698415 C =14104.802113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.086 3.914 4 H 0.072 0.928 5 C 0.122 3.878 6 N -0.719 5.719 7 C 0.518 3.482 8 O -0.577 6.577 9 C -0.109 4.109 10 H 0.139 0.861 11 C -0.111 4.111 12 C -0.148 4.148 13 C 0.266 3.734 14 F -0.206 7.206 15 F -0.210 7.210 16 C -0.157 4.157 17 N -0.680 5.680 18 C 0.065 3.935 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.330 4.330 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.410 0.590 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.345 0.655 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.677 11.273 -8.294 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.024 4.024 4 H 0.090 0.910 5 C -0.002 4.002 6 N -0.371 5.371 7 C 0.305 3.695 8 O -0.457 6.457 9 C -0.130 4.130 10 H 0.157 0.843 11 C -0.149 4.149 12 C -0.185 4.185 13 C 0.230 3.770 14 F -0.187 7.187 15 F -0.192 7.192 16 C -0.195 4.195 17 N -0.315 5.315 18 C -0.068 4.068 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.459 4.459 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.199 1.199 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.247 0.753 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.166 0.834 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.632 10.276 -9.522 20.257 hybrid contribution 0.563 0.712 0.794 1.206 sum -14.069 10.987 -8.728 19.871 Atomic orbital electron populations 1.21796 0.94115 1.02518 1.02254 1.21484 0.96182 0.94772 1.02544 1.21854 0.86812 0.97367 0.96340 0.91046 1.21568 0.98870 0.82107 0.97661 1.45943 1.53618 1.16185 1.21385 1.20865 0.79735 0.87567 0.81285 1.90682 1.41208 1.75654 1.38138 1.21937 1.03965 0.90775 0.96307 0.84311 1.22421 1.03149 0.92160 0.97126 1.23511 1.05419 0.99362 0.90255 1.22329 0.76749 0.85769 0.92172 1.92985 1.92577 1.59656 1.73517 1.92988 1.34377 1.94559 1.97241 1.23113 1.02662 0.94808 0.98944 1.59962 1.08741 1.50612 1.12203 1.21603 0.91055 1.03346 0.90750 1.20900 0.91120 0.82197 0.83131 1.90506 1.67090 1.56538 1.36711 1.41938 1.07234 1.64776 1.07182 1.19659 0.83503 1.49148 0.93632 0.90436 1.25969 1.04516 0.96508 0.94172 1.69663 1.37702 1.50481 0.98267 0.84925 0.77343 0.78240 0.78180 1.19868 1.19560 1.19919 0.92407 0.91957 0.91778 0.92288 0.91869 0.92248 0.89845 0.75348 0.90739 0.86125 0.85736 0.87776 0.86396 0.89239 0.83428 0.90587 0.87921 0.76953 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.54 71.98 0.69 -1.55 16 2 C -0.11 -2.18 5.65 30.60 0.17 -2.01 16 3 C 0.09 1.67 2.26 44.92 0.10 1.77 16 4 H 0.07 1.15 7.83 -2.38 -0.02 1.13 16 5 C 0.12 2.41 4.95 86.38 0.43 2.84 16 6 N -0.72 -12.77 4.91 -463.08 -2.27 -15.05 16 7 C 0.52 10.78 7.00 87.66 0.61 11.39 16 8 O -0.58 -16.98 15.21 -3.03 -0.05 -17.02 16 9 C -0.11 -1.51 3.29 -10.81 -0.04 -1.54 16 10 H 0.14 1.33 8.14 -2.38 -0.02 1.31 16 11 C -0.11 -1.07 6.30 31.69 0.20 -0.87 16 12 C -0.15 -1.49 6.49 31.91 0.21 -1.29 16 13 C 0.27 4.61 2.49 31.67 0.08 4.69 16 14 F -0.21 -4.07 17.16 44.97 0.77 -3.30 16 15 F -0.21 -4.84 17.17 44.97 0.77 -4.07 16 16 C -0.16 -2.64 6.01 31.32 0.19 -2.45 16 17 N -0.68 -18.35 5.84 -495.56 -2.89 -21.24 16 18 C 0.06 1.91 5.93 85.56 0.51 2.42 16 19 C 0.44 19.32 7.83 87.66 0.69 20.01 16 20 O -0.62 -32.67 15.89 -3.05 -0.05 -32.72 16 21 N -0.57 -27.71 5.29 -306.99 -1.62 -29.34 16 22 C -0.33 -18.00 9.68 84.04 0.81 -17.19 16 23 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 25 N -0.92 -47.90 13.05 21.66 0.28 -47.62 16 26 Si 0.99 41.64 29.55 68.60 2.03 43.67 16 27 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 28 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 30 H 0.06 0.85 6.99 -2.39 -0.02 0.83 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.34 7.41 -2.39 -0.02 1.32 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.57 6.97 -2.39 -0.02 1.55 16 37 H 0.41 5.72 7.39 -92.71 -0.69 5.03 16 38 H 0.07 0.86 7.85 -2.39 -0.02 0.84 16 39 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.12 1.55 8.11 -2.39 -0.02 1.53 16 43 H 0.09 2.04 6.37 -2.39 -0.02 2.03 16 44 H 0.34 9.35 6.61 -89.70 -0.59 8.76 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.10 2.79 7.38 -2.39 -0.02 2.77 16 47 H 0.40 18.09 7.90 -92.71 -0.73 17.36 16 48 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -73.14 397.87 1.09 -72.05 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -1.00 Total: 38.56 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 5.12 Total: 16.07 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -6.51 Total: -113.24 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.09 Total: -49.74 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 1.54 Total: -7.37 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -73.14 1.09 -72.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732201282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.833 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds