Wall clock time and date at job start Wed Apr 1 2020 04:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39902 * 109.47353 * 2 1 4 4 F 1.39908 * 109.46946 * 240.00337 * 2 1 3 5 5 C 1.53001 * 109.47432 * 120.00394 * 2 1 3 6 6 C 1.50695 * 109.47261 * 179.97438 * 5 2 1 7 7 O 1.21286 * 119.99921 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00085 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00025 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.47077 * 176.03430 * 9 8 6 11 11 N 1.46898 * 110.01508 * 303.76166 * 10 9 8 12 12 C 1.46898 * 110.99806 * 305.54597 * 11 10 9 13 13 C 1.50695 * 109.46914 * 185.17149 * 12 11 10 14 14 O 1.21296 * 120.00290 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00208 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00252 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99886 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99944 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46962 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46931 * 119.99826 * 20 18 16 23 23 H 1.48500 * 109.47062 * 240.00116 * 20 18 16 24 24 C 1.54263 * 110.02930 * 182.31402 * 10 9 8 25 25 C 1.54887 * 104.19615 * 217.10415 * 24 10 9 26 26 C 1.54892 * 102.75013 * 37.94767 * 25 24 10 27 27 C 1.53882 * 110.03099 * 65.15077 * 10 9 8 28 28 H 1.09004 * 109.47032 * 299.99550 * 1 2 3 29 29 H 1.08999 * 109.47406 * 59.99488 * 1 2 3 30 30 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46693 * 59.99970 * 5 2 1 32 32 H 1.09004 * 109.47057 * 300.00040 * 5 2 1 33 33 H 0.97003 * 120.00144 * 359.97438 * 8 6 5 34 34 H 1.08992 * 109.47583 * 56.03299 * 9 8 6 35 35 H 1.09007 * 109.46845 * 296.03008 * 9 8 6 36 36 H 1.00896 * 111.00361 * 69.50588 * 11 10 9 37 37 H 1.08994 * 109.47559 * 305.17352 * 12 11 10 38 38 H 1.09006 * 109.46908 * 65.17333 * 12 11 10 39 39 H 0.97001 * 119.99877 * 0.02562 * 15 13 12 40 40 H 0.97007 * 119.99667 * 180.02562 * 19 18 16 41 41 H 1.08995 * 110.49367 * 335.78490 * 24 10 9 42 42 H 1.09007 * 110.48049 * 98.43043 * 24 10 9 43 43 H 1.09008 * 110.75970 * 279.63544 * 25 24 10 44 44 H 1.09004 * 110.75773 * 156.26357 * 25 24 10 45 45 H 1.09002 * 110.48752 * 203.38225 * 26 25 24 46 46 H 1.09001 * 110.48395 * 80.73526 * 26 25 24 47 47 H 1.08991 * 110.03244 * 238.56899 * 27 10 9 48 48 H 1.09003 * 110.02934 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0400 -0.7213 1.2492 6 6 3.5470 -0.7219 1.2488 7 8 4.1534 -0.1974 0.3387 8 7 4.2209 -1.3051 2.2598 9 6 5.6859 -1.3052 2.2597 10 6 6.1960 -1.9379 3.5561 11 7 5.6404 -1.2268 4.7152 12 6 5.9233 0.2125 4.6349 13 6 5.4519 0.8882 5.8966 14 8 4.9319 0.2350 6.7766 15 7 5.6081 2.2183 6.0475 16 6 5.1797 2.8330 7.1957 17 1 4.7167 2.2513 7.9791 18 6 5.3403 4.2044 7.3510 19 7 5.9022 4.9124 6.3971 20 14 4.7560 5.0421 8.9151 21 1 4.1609 4.0309 9.8255 22 1 5.9078 5.6962 9.5863 23 1 3.7340 6.0650 8.5767 24 6 7.7374 -1.8921 3.5955 25 6 8.1401 -3.2290 4.2660 26 6 7.1129 -4.2288 3.6792 27 6 5.7988 -3.4237 3.6092 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6767 -1.7490 1.2491 32 1 1.6767 -0.2075 2.1392 33 1 3.7359 -1.7243 2.9878 34 1 6.0493 -0.2801 2.1883 35 1 6.0491 -1.8797 1.4075 36 1 4.6497 -1.3963 4.8026 37 1 6.9962 0.3661 4.5195 38 1 5.4011 0.6381 3.7779 39 1 6.0236 2.7408 5.3438 40 1 6.0146 5.8698 6.5057 41 1 8.1434 -1.8344 2.5857 42 1 8.0787 -1.0472 4.1938 43 1 8.0397 -3.1634 5.3495 44 1 9.1557 -3.5104 3.9875 45 1 6.9984 -5.0892 4.3385 46 1 7.4181 -4.5484 2.6828 47 1 5.1947 -3.6172 4.4955 48 1 5.2432 -3.6939 2.7113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:29 Heat of formation + Delta-G solvation = -182.917548 kcal Electronic energy + Delta-G solvation = -31871.339985 eV Core-core repulsion = 27210.331775 eV Total energy + Delta-G solvation = -4661.008210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.99094 -46.97303 -40.36050 -38.98421 -37.89325 -34.88471 -34.06324 -33.58633 -33.20352 -31.21314 -29.76941 -28.90853 -28.40093 -26.38097 -24.75699 -23.78591 -22.29634 -21.09177 -20.35784 -19.29951 -19.01722 -17.88667 -17.84297 -17.76195 -17.01113 -16.59676 -16.01841 -15.68431 -15.57541 -15.33536 -14.96032 -14.78048 -14.49398 -14.15414 -13.96077 -13.82182 -13.54074 -13.49142 -13.31379 -13.15960 -13.07175 -13.00113 -12.84541 -12.43237 -12.37326 -12.18566 -11.65878 -11.58252 -11.42916 -11.25674 -11.21466 -11.15823 -11.09797 -10.87071 -10.80397 -10.58027 -10.35026 -10.22629 -10.06214 -9.52032 -9.26194 -8.51663 -8.08705 -7.96241 -6.41547 -3.82702 2.42734 2.80083 3.15867 3.26462 3.33228 3.51992 3.79268 3.89817 4.01905 4.15085 4.17083 4.27040 4.43057 4.46568 4.70510 4.75508 4.80544 4.93240 5.06981 5.12947 5.19895 5.23309 5.24794 5.39259 5.41024 5.42645 5.46856 5.60524 5.65083 5.68511 5.78842 5.81459 5.84680 5.95888 5.99953 6.06637 6.13383 6.23620 6.29262 6.37045 7.15170 7.21822 7.54469 7.54984 7.99159 8.05962 8.60857 9.17715 9.54345 10.05420 10.76106 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007121 B = 0.003571 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3931.338492 B = 7839.443385 C =10952.822485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.307 3.693 3 F -0.190 7.190 4 F -0.194 7.194 5 C -0.192 4.192 6 C 0.514 3.486 7 O -0.520 6.520 8 N -0.725 5.725 9 C 0.091 3.909 10 C 0.101 3.899 11 N -0.645 5.645 12 C 0.044 3.956 13 C 0.442 3.558 14 O -0.584 6.584 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.900 5.900 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.117 4.117 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.399 0.601 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.343 0.657 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 -15.886 -12.216 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.270 3.730 3 F -0.171 7.171 4 F -0.175 7.175 5 C -0.233 4.233 6 C 0.299 3.701 7 O -0.395 6.395 8 N -0.378 5.378 9 C -0.035 4.035 10 C 0.009 3.991 11 N -0.277 5.277 12 C -0.089 4.089 13 C 0.227 3.773 14 O -0.468 6.468 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.541 5.541 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.155 4.155 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.234 0.766 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.163 0.837 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.839 -15.841 -11.906 20.399 hybrid contribution -0.778 1.086 -0.108 1.340 sum -5.616 -14.755 -12.014 19.839 Atomic orbital electron populations 1.22804 0.91192 1.05460 1.05843 1.20590 0.93081 0.76208 0.83120 1.93073 1.90525 1.36754 1.96734 1.93037 1.90619 1.80802 1.53089 1.22875 0.95024 1.05120 1.00238 1.20153 0.89186 0.78461 0.82336 1.90802 1.69904 1.43549 1.35293 1.45879 1.07672 1.59102 1.25178 1.22256 0.79304 1.02566 0.99363 1.21955 0.96128 0.93887 0.87107 1.60323 1.20283 1.08318 1.38753 1.21774 1.01888 0.88308 0.96886 1.19770 0.85540 0.82974 0.89001 1.90517 1.48402 1.64185 1.43678 1.41879 1.53584 1.05872 1.18655 1.19736 1.36402 0.90884 0.95902 0.87898 1.25266 0.97269 0.96458 0.98920 1.69627 1.43619 1.07820 1.33051 0.85815 0.78312 0.79097 0.81201 1.19233 1.20727 1.20779 1.22405 0.92484 0.99244 1.00780 1.22411 0.97973 0.94090 1.00972 1.22285 0.94893 0.97945 1.00576 1.22287 0.98425 0.92647 1.02154 0.88939 0.89637 0.89201 0.85921 0.85558 0.76600 0.90648 0.91141 0.83723 0.89349 0.93605 0.77505 0.91896 0.91334 0.90249 0.90634 0.91902 0.91669 0.91977 0.90378 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 9.38 37.15 0.35 -0.91 16 2 C 0.31 3.28 1.85 -26.73 -0.05 3.23 16 3 F -0.19 -2.76 16.15 2.25 0.04 -2.72 16 4 F -0.19 -2.55 16.14 2.25 0.04 -2.51 16 5 C -0.19 -1.67 5.30 -27.88 -0.15 -1.82 16 6 C 0.51 6.49 7.60 -10.99 -0.08 6.40 16 7 O -0.52 -8.93 14.83 5.55 0.08 -8.85 16 8 N -0.73 -7.74 5.06 -60.29 -0.31 -8.05 16 9 C 0.09 1.05 3.56 -4.04 -0.01 1.04 16 10 C 0.10 1.13 0.55 -130.48 -0.07 1.06 16 11 N -0.64 -9.28 5.47 -100.08 -0.55 -9.82 16 12 C 0.04 0.75 5.28 -4.98 -0.03 0.72 16 13 C 0.44 10.20 7.83 -10.99 -0.09 10.11 16 14 O -0.58 -15.35 15.89 5.54 0.09 -15.26 16 15 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 16 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 20 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.11 -1.22 5.83 -25.07 -0.15 -1.37 16 25 C -0.12 -1.17 6.91 -24.74 -0.17 -1.34 16 26 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 27 C -0.12 -1.09 5.74 -25.61 -0.15 -1.24 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.40 3.41 7.17 -40.82 -0.29 3.12 16 34 H 0.08 1.04 6.73 -51.93 -0.35 0.69 16 35 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.34 4.86 7.34 -39.29 -0.29 4.57 16 37 H 0.09 1.44 6.24 -51.93 -0.32 1.11 16 38 H 0.05 0.76 6.66 -51.93 -0.35 0.42 16 39 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.07 0.67 7.85 -51.93 -0.41 0.27 16 42 H 0.08 1.00 6.18 -51.93 -0.32 0.68 16 43 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.76 7.85 -51.93 -0.41 0.36 16 48 H 0.06 0.54 7.54 -51.93 -0.39 0.15 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -35.02 392.94 -7.24 -42.26 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -7.19 Total: 14.59 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -1.01 Total: 6.70 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.19 Total: -56.12 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.17 Total: -24.11 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.02 -7.24 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.657 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds