Wall clock time and date at job start Wed Apr 1 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46849 * 2 1 4 4 H 1.09002 * 109.47533 * 305.00098 * 3 2 1 5 5 N 1.46501 * 109.47248 * 65.00578 * 3 2 1 6 6 C 1.34776 * 119.99723 * 275.00185 * 5 3 2 7 7 C 1.50700 * 119.99711 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00167 * 359.97438 * 6 5 3 9 9 C 1.50704 * 109.47091 * 185.00252 * 3 2 1 10 10 O 1.21281 * 120.00076 * 240.00201 * 9 3 2 11 11 N 1.34777 * 119.99645 * 60.00274 * 9 3 2 12 12 C 1.46506 * 119.99662 * 179.97438 * 11 9 3 13 13 C 1.53002 * 109.47036 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.49485 * 54.93619 * 13 12 11 15 15 C 1.52759 * 109.58953 * 294.98472 * 13 12 11 16 16 N 1.46937 * 109.00533 * 185.53521 * 15 13 12 17 17 C 1.36932 * 120.62770 * 233.57820 * 16 15 13 18 18 H 1.08003 * 119.99591 * 152.17104 * 17 16 15 19 19 C 1.38806 * 120.00646 * 331.89770 * 17 16 15 20 20 N 1.31619 * 119.99811 * 343.17168 * 19 17 16 21 21 Si 1.86802 * 120.00042 * 163.16428 * 19 17 16 22 22 H 1.48494 * 109.46808 * 60.00500 * 21 19 17 23 23 H 1.48506 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47230 * 299.99897 * 21 19 17 25 25 C 1.46921 * 118.73798 * 53.31139 * 16 15 13 26 26 C 1.53191 * 108.77377 * 306.64287 * 25 16 15 27 27 C 1.53034 * 109.31527 * 54.63663 * 26 25 16 28 28 F 1.39900 * 109.46219 * 58.65676 * 27 26 25 29 29 F 1.39908 * 109.46150 * 178.61516 * 27 26 25 30 30 H 1.09001 * 109.46763 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46627 * 299.99627 * 1 2 3 32 32 H 1.08997 * 109.47361 * 59.99463 * 1 2 3 33 33 H 1.09002 * 109.47057 * 240.00431 * 2 1 3 34 34 H 1.08997 * 109.47361 * 120.00537 * 2 1 3 35 35 H 0.96996 * 119.99992 * 94.99588 * 5 3 2 36 36 H 1.08996 * 109.47595 * 89.99820 * 7 6 5 37 37 H 1.09002 * 109.46607 * 209.99939 * 7 6 5 38 38 H 1.09002 * 109.46948 * 329.98946 * 7 6 5 39 39 H 0.96995 * 120.00667 * 0.02562 * 11 9 3 40 40 H 1.09004 * 109.47260 * 60.00131 * 12 11 9 41 41 H 1.08997 * 109.47267 * 300.00224 * 12 11 9 42 42 H 1.08994 * 109.51629 * 65.65792 * 15 13 12 43 43 H 1.08995 * 109.43552 * 305.36925 * 15 13 12 44 44 H 0.97005 * 120.00379 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.58944 * 66.42948 * 25 16 15 46 46 H 1.08997 * 109.58684 * 186.71201 * 25 16 15 47 47 H 1.09000 * 109.49821 * 174.59071 * 26 25 16 48 48 H 1.09007 * 109.49760 * 294.64886 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2519 6 6 0.4352 2.6643 1.3671 7 6 0.0368 3.3385 2.6546 8 8 -0.3393 2.6325 0.4343 9 6 3.5419 1.4444 -0.1239 10 8 4.2216 1.9436 0.7477 11 7 4.1296 0.8913 -1.2033 12 6 5.5897 0.8936 -1.3240 13 6 5.9945 0.2089 -2.6311 14 1 5.4878 0.6918 -3.4667 15 6 5.5971 -1.2652 -2.5815 16 7 6.1083 -1.9393 -3.7829 17 6 5.2684 -2.6609 -4.5886 18 1 5.4904 -2.7699 -5.6399 19 6 4.1350 -3.2569 -4.0531 20 7 4.0296 -3.4193 -2.7512 21 14 2.7591 -3.8282 -5.1801 22 1 3.2849 -4.8438 -6.1273 23 1 1.6695 -4.4260 -4.3672 24 1 2.2290 -2.6686 -5.9413 25 6 7.5364 -1.8194 -4.1066 26 6 7.9109 -0.3344 -4.1420 27 6 7.5092 0.3207 -2.8185 28 9 8.1586 -0.3268 -1.7620 29 9 7.8785 1.6700 -2.8353 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2720 2.1231 1.9978 36 1 0.3217 4.3899 2.6176 37 1 -1.0421 3.2589 2.7877 38 1 0.5425 2.8541 3.4900 39 1 3.5860 0.4923 -1.9005 40 1 6.0248 0.3548 -0.4822 41 1 5.9527 1.9213 -1.3242 42 1 4.5108 -1.3487 -2.5501 43 1 6.0270 -1.7270 -1.6927 44 1 3.2373 -3.8354 -2.3768 45 1 8.1277 -2.3272 -3.3446 46 1 7.7296 -2.2704 -5.0798 47 1 8.9866 -0.2338 -4.2860 48 1 7.3867 0.1536 -4.9638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754745140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:54 Heat of formation + Delta-G solvation = -163.916231 kcal Electronic energy + Delta-G solvation = -32692.073841 eV Core-core repulsion = 28031.889590 eV Total energy + Delta-G solvation = -4660.184251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.58243 -46.53360 -40.52742 -39.15112 -37.42288 -35.42764 -34.96330 -32.92830 -32.62093 -31.18429 -29.86605 -29.85262 -27.44236 -25.43125 -25.04835 -22.62329 -22.10061 -21.44389 -20.69824 -20.29152 -19.57866 -17.96384 -17.15216 -16.92724 -16.86150 -16.32801 -15.86518 -15.81688 -15.60056 -15.17530 -14.99498 -14.77433 -14.17710 -14.03669 -13.85646 -13.59596 -13.50214 -13.30124 -13.16093 -12.90687 -12.85540 -12.78021 -12.51388 -12.28404 -12.19028 -11.96329 -11.77120 -11.73899 -11.58088 -11.47569 -11.24303 -10.87750 -10.87349 -10.63957 -10.57640 -10.10812 -10.01621 -9.99380 -9.94644 -9.69458 -9.15995 -8.95837 -8.68079 -6.95563 -5.99611 -3.43976 2.48091 2.59482 2.81406 3.26975 3.34224 3.35069 3.40603 4.17360 4.33042 4.49360 4.59011 4.68055 4.73181 4.87589 4.89654 4.99995 5.03209 5.13138 5.18517 5.27797 5.34634 5.37844 5.46725 5.52543 5.62510 5.75449 5.81681 5.85167 5.94865 6.01567 6.02950 6.08231 6.16371 6.29210 6.31583 6.40939 6.45120 6.46230 6.68450 6.94650 7.30489 7.38472 7.51634 7.60963 8.08856 8.18297 8.20401 8.97375 9.59246 10.15003 11.09211 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.003896 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.518906 B = 7184.866677 C = 9612.585018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.127 3.873 4 H 0.114 0.886 5 N -0.711 5.711 6 C 0.512 3.488 7 C -0.171 4.171 8 O -0.543 6.543 9 C 0.512 3.488 10 O -0.545 6.545 11 N -0.710 5.710 12 C 0.129 3.871 13 C -0.165 4.165 14 H 0.099 0.901 15 C 0.179 3.821 16 N -0.591 5.591 17 C -0.261 4.261 18 H 0.069 0.931 19 C 0.008 3.992 20 N -0.899 5.899 21 Si 0.902 3.098 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.282 1.282 25 C 0.144 3.856 26 C -0.171 4.171 27 C 0.300 3.700 28 F -0.199 7.199 29 F -0.213 7.213 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.410 0.590 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.408 0.592 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.033 0.967 44 H 0.257 0.743 45 H 0.031 0.969 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 9.881 6.302 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.132 0.868 5 N -0.365 5.365 6 C 0.299 3.701 7 C -0.231 4.231 8 O -0.420 6.420 9 C 0.297 3.703 10 O -0.422 6.422 11 N -0.362 5.362 12 C 0.005 3.995 13 C -0.187 4.187 14 H 0.117 0.883 15 C 0.052 3.948 16 N -0.312 5.312 17 C -0.390 4.390 18 H 0.087 0.913 19 C -0.191 4.191 20 N -0.542 5.542 21 Si 0.732 3.268 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.208 1.208 25 C 0.017 3.983 26 C -0.211 4.211 27 C 0.263 3.737 28 F -0.180 7.180 29 F -0.194 7.194 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.246 0.754 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.245 0.755 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.510 10.111 6.364 12.208 hybrid contribution -0.394 -0.414 -0.421 0.710 sum -2.904 9.697 5.943 11.738 Atomic orbital electron populations 1.21776 0.94106 1.01122 1.02826 1.21939 0.97668 0.93480 1.03948 1.20881 0.91453 0.96047 0.89773 0.86847 1.45840 1.17060 1.57448 1.16148 1.20746 0.81101 0.77914 0.90327 1.21867 1.04178 1.02096 0.94947 1.90740 1.51231 1.58975 1.41102 1.20500 0.89906 0.77878 0.81970 1.90676 1.65285 1.46027 1.40251 1.45859 1.08074 1.59221 1.23051 1.21294 0.79698 1.00757 0.97786 1.23132 0.92606 1.04501 0.98433 0.88304 1.20788 1.01519 0.83196 0.89265 1.44058 1.02126 1.57283 1.27780 1.19149 1.03311 1.26187 0.90402 0.91287 1.25059 1.00451 0.97827 0.95782 1.70008 1.28576 1.45602 1.10049 0.86375 0.81767 0.78677 0.80009 1.20753 1.21465 1.20828 1.20914 0.87068 0.90355 0.99976 1.23052 1.02193 1.01281 0.94566 1.21008 0.91656 0.74026 0.86975 1.92968 1.83512 1.81435 1.60090 1.92961 1.93250 1.36149 1.97066 0.92935 0.92691 0.91988 0.89683 0.91028 0.75357 0.88833 0.88863 0.90123 0.75547 0.90615 0.91229 0.88108 0.94885 0.93271 0.95085 0.91249 0.90402 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.52 37.16 0.32 -1.47 16 2 C -0.13 -1.66 5.55 -26.73 -0.15 -1.81 16 3 C 0.13 1.61 2.67 -69.08 -0.18 1.42 16 4 H 0.11 1.46 7.58 -51.93 -0.39 1.07 16 5 N -0.71 -8.02 4.90 -54.93 -0.27 -8.29 16 6 C 0.51 5.76 6.51 -10.99 -0.07 5.69 16 7 C -0.17 -1.21 10.30 36.01 0.37 -0.84 16 8 O -0.54 -7.98 14.24 5.56 0.08 -7.90 16 9 C 0.51 7.50 7.22 -10.98 -0.08 7.42 16 10 O -0.54 -9.27 15.84 5.56 0.09 -9.18 16 11 N -0.71 -10.39 5.19 -60.29 -0.31 -10.70 16 12 C 0.13 2.07 4.84 -4.04 -0.02 2.05 16 13 C -0.17 -2.82 2.02 -90.72 -0.18 -3.00 16 14 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 15 C 0.18 3.72 4.17 -3.93 -0.02 3.70 16 16 N -0.59 -13.20 3.00 -172.59 -0.52 -13.72 16 17 C -0.26 -6.44 9.58 -15.06 -0.14 -6.58 16 18 H 0.07 1.67 7.88 -52.48 -0.41 1.26 16 19 C 0.01 0.20 4.92 -17.43 -0.09 0.12 16 20 N -0.90 -23.39 11.18 55.49 0.62 -22.77 16 21 Si 0.90 19.88 29.59 -169.99 -5.03 14.85 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.14 2.72 6.32 -3.71 -0.02 2.70 16 26 C -0.17 -2.74 5.62 -26.62 -0.15 -2.89 16 27 C 0.30 5.11 1.63 -26.69 -0.04 5.07 16 28 F -0.20 -3.69 15.73 2.25 0.04 -3.65 16 29 F -0.21 -3.57 16.40 2.25 0.04 -3.53 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.70 5.64 -51.93 -0.29 0.41 16 32 H 0.06 0.83 7.85 -51.93 -0.41 0.43 16 33 H 0.08 1.12 7.43 -51.93 -0.39 0.73 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.41 4.24 7.79 -40.82 -0.32 3.92 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.41 5.66 7.06 -40.82 -0.29 5.38 16 40 H 0.08 1.32 7.97 -51.93 -0.41 0.91 16 41 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 42 H 0.10 2.24 5.25 -51.93 -0.27 1.97 16 43 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 44 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 45 H 0.03 0.61 7.92 -51.93 -0.41 0.20 16 46 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 47 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -29.67 386.55 -7.24 -36.91 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.33 Total: 10.58 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -0.46 Total: 11.59 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.48 Total: -55.49 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.17 Total: -17.09 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.07 Total: -7.18 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.67 -7.24 -36.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754745140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.009 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds