Wall clock time and date at job start Wed Apr 1 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46849 * 2 1 4 4 H 1.09002 * 109.47533 * 305.00098 * 3 2 1 5 5 N 1.46501 * 109.47248 * 65.00578 * 3 2 1 6 6 C 1.34776 * 119.99723 * 275.00185 * 5 3 2 7 7 C 1.50700 * 119.99711 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00167 * 359.97438 * 6 5 3 9 9 C 1.50704 * 109.47091 * 185.00252 * 3 2 1 10 10 O 1.21281 * 120.00076 * 240.00201 * 9 3 2 11 11 N 1.34777 * 119.99645 * 60.00274 * 9 3 2 12 12 C 1.46506 * 119.99662 * 179.97438 * 11 9 3 13 13 C 1.53002 * 109.47036 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.49485 * 54.93619 * 13 12 11 15 15 C 1.52759 * 109.58953 * 294.98472 * 13 12 11 16 16 N 1.46937 * 109.00533 * 185.53521 * 15 13 12 17 17 C 1.36932 * 120.62770 * 233.57820 * 16 15 13 18 18 H 1.08003 * 119.99591 * 152.17104 * 17 16 15 19 19 C 1.38806 * 120.00646 * 331.89770 * 17 16 15 20 20 N 1.31619 * 119.99811 * 343.17168 * 19 17 16 21 21 Si 1.86802 * 120.00042 * 163.16428 * 19 17 16 22 22 H 1.48494 * 109.46808 * 60.00500 * 21 19 17 23 23 H 1.48506 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47230 * 299.99897 * 21 19 17 25 25 C 1.46921 * 118.73798 * 53.31139 * 16 15 13 26 26 C 1.53191 * 108.77377 * 306.64287 * 25 16 15 27 27 C 1.53034 * 109.31527 * 54.63663 * 26 25 16 28 28 F 1.39900 * 109.46219 * 58.65676 * 27 26 25 29 29 F 1.39908 * 109.46150 * 178.61516 * 27 26 25 30 30 H 1.09001 * 109.46763 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46627 * 299.99627 * 1 2 3 32 32 H 1.08997 * 109.47361 * 59.99463 * 1 2 3 33 33 H 1.09002 * 109.47057 * 240.00431 * 2 1 3 34 34 H 1.08997 * 109.47361 * 120.00537 * 2 1 3 35 35 H 0.96996 * 119.99992 * 94.99588 * 5 3 2 36 36 H 1.08996 * 109.47595 * 89.99820 * 7 6 5 37 37 H 1.09002 * 109.46607 * 209.99939 * 7 6 5 38 38 H 1.09002 * 109.46948 * 329.98946 * 7 6 5 39 39 H 0.96995 * 120.00667 * 0.02562 * 11 9 3 40 40 H 1.09004 * 109.47260 * 60.00131 * 12 11 9 41 41 H 1.08997 * 109.47267 * 300.00224 * 12 11 9 42 42 H 1.08994 * 109.51629 * 65.65792 * 15 13 12 43 43 H 1.08995 * 109.43552 * 305.36925 * 15 13 12 44 44 H 0.97005 * 120.00379 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.58944 * 66.42948 * 25 16 15 46 46 H 1.08997 * 109.58684 * 186.71201 * 25 16 15 47 47 H 1.09000 * 109.49821 * 174.59071 * 26 25 16 48 48 H 1.09007 * 109.49760 * 294.64886 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2519 6 6 0.4352 2.6643 1.3671 7 6 0.0368 3.3385 2.6546 8 8 -0.3393 2.6325 0.4343 9 6 3.5419 1.4444 -0.1239 10 8 4.2216 1.9436 0.7477 11 7 4.1296 0.8913 -1.2033 12 6 5.5897 0.8936 -1.3240 13 6 5.9945 0.2089 -2.6311 14 1 5.4878 0.6918 -3.4667 15 6 5.5971 -1.2652 -2.5815 16 7 6.1083 -1.9393 -3.7829 17 6 5.2684 -2.6609 -4.5886 18 1 5.4904 -2.7699 -5.6399 19 6 4.1350 -3.2569 -4.0531 20 7 4.0296 -3.4193 -2.7512 21 14 2.7591 -3.8282 -5.1801 22 1 3.2849 -4.8438 -6.1273 23 1 1.6695 -4.4260 -4.3672 24 1 2.2290 -2.6686 -5.9413 25 6 7.5364 -1.8194 -4.1066 26 6 7.9109 -0.3344 -4.1420 27 6 7.5092 0.3207 -2.8185 28 9 8.1586 -0.3268 -1.7620 29 9 7.8785 1.6700 -2.8353 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2720 2.1231 1.9978 36 1 0.3217 4.3899 2.6176 37 1 -1.0421 3.2589 2.7877 38 1 0.5425 2.8541 3.4900 39 1 3.5860 0.4923 -1.9005 40 1 6.0248 0.3548 -0.4822 41 1 5.9527 1.9213 -1.3242 42 1 4.5108 -1.3487 -2.5501 43 1 6.0270 -1.7270 -1.6927 44 1 3.2373 -3.8354 -2.3768 45 1 8.1277 -2.3272 -3.3446 46 1 7.7296 -2.2704 -5.0798 47 1 8.9866 -0.2338 -4.2860 48 1 7.3867 0.1536 -4.9638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754745140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:52 Heat of formation + Delta-G solvation = -183.145589 kcal Electronic energy + Delta-G solvation = -32692.907689 eV Core-core repulsion = 28031.889590 eV Total energy + Delta-G solvation = -4661.018099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.98340 -47.93803 -41.62282 -40.25517 -38.95489 -36.54192 -36.30632 -34.54648 -33.71169 -32.56761 -31.52608 -30.61855 -28.57112 -27.11705 -26.43847 -24.13992 -23.28276 -22.83990 -21.75614 -21.41107 -21.04939 -19.21709 -18.66453 -18.29233 -18.04583 -17.55323 -17.21253 -16.90638 -16.86323 -16.73003 -16.23603 -16.13164 -15.58391 -15.39058 -15.11317 -14.94919 -14.75009 -14.57954 -14.50770 -14.26165 -14.21398 -13.81814 -13.59389 -13.32746 -13.30491 -13.21970 -13.13344 -13.05479 -12.96772 -12.87830 -12.57791 -12.51742 -12.27193 -12.13840 -11.93645 -11.86017 -11.64884 -11.35233 -11.02968 -10.93079 -10.55682 -10.26614 -10.14071 -8.77173 -7.88641 -5.34734 1.36896 1.52084 1.55309 1.59349 1.60311 1.76722 2.37464 2.51471 2.81404 3.14700 3.23548 3.29362 3.45468 3.55718 3.63094 3.80539 3.89560 3.95537 3.98972 4.07988 4.30456 4.32598 4.45637 4.46829 4.54783 4.56316 4.67237 4.68099 4.73979 4.76841 4.89590 4.97183 4.98660 5.02666 5.10101 5.13035 5.20922 5.27567 5.31412 5.36794 5.58960 5.68489 6.30354 6.36273 6.51568 6.96323 7.11801 7.21654 7.78301 8.31220 9.18456 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.003896 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.518906 B = 7184.866677 C = 9612.585018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.135 3.865 4 H 0.113 0.887 5 N -0.708 5.708 6 C 0.507 3.493 7 C -0.164 4.164 8 O -0.581 6.581 9 C 0.515 3.485 10 O -0.567 6.567 11 N -0.707 5.707 12 C 0.137 3.863 13 C -0.152 4.152 14 H 0.111 0.889 15 C 0.192 3.808 16 N -0.607 5.607 17 C -0.268 4.268 18 H 0.073 0.927 19 C -0.035 4.035 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.282 1.282 23 H -0.297 1.297 24 H -0.275 1.275 25 C 0.140 3.860 26 C -0.160 4.160 27 C 0.298 3.702 28 F -0.209 7.209 29 F -0.207 7.207 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.413 0.587 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.000 1.000 44 H 0.252 0.748 45 H 0.019 0.981 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 11.061 5.926 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.026 3.974 4 H 0.131 0.869 5 N -0.362 5.362 6 C 0.297 3.703 7 C -0.223 4.223 8 O -0.461 6.461 9 C 0.301 3.699 10 O -0.447 6.447 11 N -0.359 5.359 12 C 0.013 3.987 13 C -0.173 4.173 14 H 0.129 0.871 15 C 0.066 3.934 16 N -0.330 5.330 17 C -0.397 4.397 18 H 0.090 0.910 19 C -0.231 4.231 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.201 1.201 25 C 0.014 3.986 26 C -0.199 4.199 27 C 0.261 3.739 28 F -0.191 7.191 29 F -0.188 7.188 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.253 0.747 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.250 0.750 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.018 0.982 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.097 0.903 47 H 0.123 0.877 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.503 11.306 5.986 13.035 hybrid contribution -0.315 -0.803 -0.292 0.911 sum -2.818 10.503 5.694 12.275 Atomic orbital electron populations 1.21692 0.93857 1.01201 1.02303 1.21876 0.97707 0.93380 1.03542 1.20735 0.89758 0.96191 0.90708 0.86942 1.45886 1.17433 1.57219 1.15676 1.21542 0.80315 0.77177 0.91278 1.21902 1.04759 1.02596 0.93060 1.90725 1.52155 1.60430 1.42773 1.20796 0.90610 0.77095 0.81355 1.90662 1.65989 1.47045 1.40956 1.45829 1.07576 1.59149 1.23335 1.21124 0.80475 1.00518 0.96619 1.22919 0.93208 1.01854 0.99355 0.87057 1.20472 1.00215 0.85094 0.87639 1.44304 1.03488 1.57460 1.27722 1.19449 1.03630 1.25736 0.90905 0.90959 1.25652 1.02246 0.98496 0.96738 1.70141 1.28783 1.46797 1.11351 0.85485 0.79231 0.78222 0.78314 1.20757 1.22327 1.20093 1.21021 0.85060 0.92545 0.99977 1.22952 1.04134 0.98709 0.94155 1.21089 0.91234 0.74299 0.87238 1.92954 1.83651 1.81709 1.60754 1.92971 1.93141 1.35654 1.97047 0.92487 0.92759 0.92920 0.90441 0.91093 0.74661 0.87297 0.88285 0.87906 0.75047 0.92291 0.90670 0.89700 0.98180 0.93830 0.96278 0.90282 0.87658 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.52 71.98 0.61 -2.74 16 2 C -0.13 -3.19 5.55 30.59 0.17 -3.02 16 3 C 0.14 3.38 2.67 44.25 0.12 3.50 16 4 H 0.11 2.89 7.58 -2.39 -0.02 2.87 16 5 N -0.71 -15.37 4.90 -446.09 -2.19 -17.56 16 6 C 0.51 10.86 6.51 87.66 0.57 11.44 16 7 C -0.16 -1.94 10.30 71.24 0.73 -1.21 16 8 O -0.58 -16.80 14.24 -3.04 -0.04 -16.84 16 9 C 0.52 14.97 7.22 87.66 0.63 15.60 16 10 O -0.57 -19.08 15.84 -3.03 -0.05 -19.13 16 11 N -0.71 -20.64 5.19 -463.04 -2.40 -23.05 16 12 C 0.14 4.38 4.84 86.38 0.42 4.80 16 13 C -0.15 -5.08 2.02 -10.86 -0.02 -5.10 16 14 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 15 C 0.19 8.08 4.17 86.22 0.36 8.44 16 16 N -0.61 -26.96 3.00 -699.94 -2.10 -29.06 16 17 C -0.27 -13.06 9.58 84.03 0.81 -12.25 16 18 H 0.07 3.42 7.88 -2.91 -0.02 3.40 16 19 C -0.03 -1.73 4.92 84.86 0.42 -1.31 16 20 N -0.93 -48.96 11.18 21.65 0.24 -48.71 16 21 Si 0.96 40.78 29.59 68.60 2.03 42.81 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.14 5.14 6.32 86.36 0.55 5.68 16 26 C -0.16 -4.74 5.62 30.67 0.17 -4.56 16 27 C 0.30 9.69 1.63 30.62 0.05 9.74 16 28 F -0.21 -7.63 15.73 44.97 0.71 -6.92 16 29 F -0.21 -6.45 16.40 44.97 0.74 -5.71 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.37 5.64 -2.39 -0.01 1.35 16 32 H 0.05 1.42 7.85 -2.39 -0.02 1.40 16 33 H 0.08 2.08 7.43 -2.39 -0.02 2.06 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 8.13 7.79 -92.71 -0.72 7.41 16 36 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.41 11.48 7.06 -92.71 -0.65 10.82 16 40 H 0.06 2.09 7.97 -2.39 -0.02 2.07 16 41 H 0.08 2.34 7.63 -2.39 -0.02 2.33 16 42 H 0.08 3.84 5.25 -2.39 -0.01 3.83 16 43 H 0.00 0.00 7.92 -2.39 -0.02 -0.01 16 44 H 0.25 13.10 8.31 -92.70 -0.77 12.33 16 45 H 0.02 0.75 7.92 -2.39 -0.02 0.73 16 46 H 0.08 2.72 7.93 -2.39 -0.02 2.70 16 47 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -63.22 386.55 2.14 -61.08 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.38 Total: 34.11 kcal Atomic # 6 Polarization: 23.41 SS G_CDS: 5.58 Total: 29.00 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -6.45 Total: -118.38 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.09 Total: -35.97 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 1.45 Total: -12.64 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -63.22 2.14 -61.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754745140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.061 kcal (2) G-P(sol) polarization free energy of solvation -63.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds