Wall clock time and date at job start Wed Apr 1 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46847 * 2 1 4 4 N 1.46501 * 109.47468 * 119.99989 * 2 1 3 5 5 C 1.46492 * 120.00260 * 300.00541 * 4 2 1 6 6 C 1.53003 * 109.46915 * 270.00012 * 5 4 2 7 7 N 1.46898 * 109.47392 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00277 * 66.03672 * 7 6 5 9 9 C 1.46896 * 111.00370 * 189.99517 * 7 6 5 10 10 C 1.50696 * 109.47452 * 169.99856 * 9 7 6 11 11 O 1.21292 * 119.99879 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00137 * 180.02562 * 10 9 7 13 13 C 1.37105 * 119.99968 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99700 * 359.71718 * 13 12 10 15 15 C 1.38942 * 119.99884 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00042 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00016 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47016 * 119.99774 * 17 15 13 20 20 H 1.48500 * 109.47415 * 239.99774 * 17 15 13 21 21 C 1.34777 * 119.99638 * 119.99721 * 4 2 1 22 22 O 1.21283 * 119.99618 * 180.02562 * 21 4 2 23 23 C 1.50701 * 120.00287 * 0.02562 * 21 4 2 24 24 H 1.09003 * 115.54911 * 34.40943 * 23 21 4 25 25 C 1.52997 * 117.49758 * 248.74723 * 23 21 4 26 26 C 1.52994 * 117.50155 * 180.08347 * 23 21 4 27 27 F 1.39895 * 117.50435 * 214.98003 * 26 23 21 28 28 F 1.39905 * 117.49621 * 359.97438 * 26 23 21 29 29 H 1.09002 * 109.47355 * 299.99804 * 1 2 3 30 30 H 1.08999 * 109.47396 * 59.99781 * 1 2 3 31 31 H 1.09003 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47048 * 240.00648 * 2 1 3 33 33 H 1.09002 * 109.46944 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47301 * 300.00277 * 3 2 1 35 35 H 1.09003 * 109.47246 * 60.00705 * 3 2 1 36 36 H 1.08993 * 109.47578 * 149.99452 * 5 4 2 37 37 H 1.09003 * 109.47339 * 29.99021 * 5 4 2 38 38 H 1.08993 * 109.47455 * 59.99364 * 6 5 4 39 39 H 1.09006 * 109.46764 * 299.99821 * 6 5 4 40 40 H 1.08997 * 109.47353 * 183.95632 * 8 7 6 41 41 H 1.09001 * 109.47441 * 303.96065 * 8 7 6 42 42 H 1.09009 * 109.46510 * 63.95688 * 8 7 6 43 43 H 1.09000 * 109.47017 * 49.99894 * 9 7 6 44 44 H 1.08996 * 109.47227 * 290.00215 * 9 7 6 45 45 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 46 46 H 0.97005 * 120.00019 * 180.02562 * 16 15 13 47 47 H 1.09006 * 117.50091 * 359.97438 * 25 23 21 48 48 H 1.09000 * 117.50046 * 145.01853 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7190 0.8169 2.9899 7 7 2.3646 1.3183 4.3244 8 6 2.4403 0.2469 5.3266 9 6 3.2152 2.4545 4.7031 10 6 2.6709 3.0946 5.9541 11 8 1.6728 2.6479 6.4789 12 7 3.2932 4.1634 6.4897 13 6 2.7983 4.7454 7.6282 14 1 1.9072 4.3501 8.0932 15 6 3.4401 5.8469 8.1807 16 7 4.5217 6.3305 7.6123 17 14 2.7654 6.6403 9.7314 18 1 1.5483 5.9118 10.1708 19 1 3.7910 6.5817 10.8038 20 1 2.4211 8.0577 9.4527 21 6 2.7932 -1.7864 1.0724 22 8 3.1972 -2.3584 2.0626 23 6 3.1576 -2.3010 -0.2964 24 1 3.2998 -1.5388 -1.0627 25 6 2.5536 -3.6372 -0.7327 26 6 4.0383 -3.5499 -0.3703 27 9 4.9640 -3.6266 -1.4163 28 9 4.4440 -4.1265 0.8381 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 1.6238 -1.0227 3.2290 37 1 0.6905 0.2973 2.4844 38 1 2.7596 1.6494 2.2876 39 1 3.6931 0.3295 3.0322 40 1 2.1058 0.6277 6.2916 41 1 1.8013 -0.5818 5.0217 42 1 3.4703 -0.1002 5.4102 43 1 3.2248 3.1862 3.8952 44 1 4.2304 2.1029 4.8869 45 1 4.0916 4.5204 6.0702 46 1 4.9700 7.0993 7.9982 47 1 1.8929 -4.1444 -0.0295 48 1 2.2987 -3.7544 -1.7859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755810377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:24 Heat of formation + Delta-G solvation = -119.005476 kcal Electronic energy + Delta-G solvation = -31260.293477 eV Core-core repulsion = 26602.056703 eV Total energy + Delta-G solvation = -4658.236774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.01842 -47.65372 -40.64164 -38.60822 -37.47050 -36.24871 -35.95902 -33.84368 -32.20394 -31.22534 -29.84241 -27.79785 -27.55808 -25.91714 -24.77005 -23.55458 -22.95439 -22.16503 -21.05928 -19.37481 -19.06296 -18.71382 -17.81065 -17.31795 -17.00461 -16.46154 -16.22697 -15.81745 -15.39604 -15.18854 -14.65433 -14.59941 -14.46898 -14.37824 -14.28478 -14.02054 -13.92054 -13.79707 -13.43342 -13.42269 -13.39691 -13.14400 -12.81036 -12.63771 -12.25342 -12.19984 -12.03030 -11.69693 -11.60931 -11.48803 -11.36629 -11.26809 -11.14060 -10.91265 -10.69303 -10.49473 -10.32914 -10.21072 -10.11966 -9.46960 -9.06951 -8.41199 -7.95976 -7.82784 -6.40021 -3.80661 1.86740 2.33481 2.57941 2.86187 3.17412 3.27835 3.35132 3.66877 3.69200 3.92875 4.06066 4.13248 4.18139 4.29823 4.41421 4.64763 4.71829 4.81646 4.91930 5.03568 5.13556 5.16311 5.21592 5.24759 5.26537 5.28385 5.37715 5.46660 5.55888 5.69256 5.71300 5.76011 5.83896 5.88538 5.98289 6.03557 6.09632 6.23426 6.31215 6.63564 7.01767 7.28537 7.40262 7.57151 7.79371 8.08689 8.63997 9.20210 9.56704 10.08657 10.77905 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002012 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.449789 B =13916.497390 C =14382.533540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 C -0.172 4.172 4 N -0.597 5.597 5 C 0.118 3.882 6 C 0.035 3.965 7 N -0.515 5.515 8 C 0.020 3.980 9 C 0.047 3.953 10 C 0.446 3.554 11 O -0.577 6.577 12 N -0.566 5.566 13 C -0.297 4.297 14 H 0.104 0.896 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.539 3.461 22 O -0.515 6.515 23 C -0.198 4.198 24 H 0.150 0.850 25 C -0.147 4.147 26 C 0.229 3.771 27 F -0.156 7.156 28 F -0.137 7.137 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.129 0.871 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -15.649 -23.550 28.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.230 4.230 4 N -0.330 5.330 5 C -0.004 4.004 6 C -0.094 4.094 7 N -0.240 5.240 8 C -0.128 4.128 9 C -0.084 4.084 10 C 0.231 3.769 11 O -0.461 6.461 12 N -0.202 5.202 13 C -0.426 4.426 14 H 0.121 0.879 15 C -0.181 4.181 16 N -0.544 5.544 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.325 3.675 22 O -0.389 6.389 23 C -0.220 4.220 24 H 0.167 0.833 25 C -0.185 4.185 26 C 0.192 3.808 27 F -0.137 7.137 28 F -0.117 7.117 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.147 0.853 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.741 -15.945 -22.586 28.051 hybrid contribution 1.421 0.568 0.364 1.573 sum -3.319 -15.377 -22.222 27.227 Atomic orbital electron populations 1.22184 0.94246 1.02651 1.03252 1.21305 0.95102 0.93890 0.87380 1.22358 1.01797 0.95373 1.03492 1.47973 1.50239 1.27217 1.07597 1.21493 0.98679 0.98027 0.82215 1.22639 0.96932 0.97985 0.91828 1.61552 1.53467 1.07826 1.01111 1.22593 0.98846 0.93270 0.98052 1.21858 0.94564 0.93712 0.98301 1.19716 0.86722 0.83574 0.86878 1.90479 1.27019 1.64613 1.63959 1.41877 1.26649 1.26660 1.25056 1.19745 1.10883 1.10190 1.01798 0.87858 1.25260 0.96029 0.97130 0.99637 1.69623 1.18810 1.25169 1.40813 0.85806 0.78897 0.78768 0.80905 1.19220 1.20801 1.20777 1.19235 0.78793 0.80642 0.88804 1.90826 1.52218 1.57305 1.38590 1.23712 1.03813 0.94518 0.99974 0.83282 1.24293 0.93063 0.95534 1.05625 1.19481 0.85597 0.99499 0.76232 1.93054 1.68311 1.96586 1.55733 1.93147 1.91683 1.84730 1.42148 0.91361 0.91125 0.92148 0.89069 0.92065 0.91130 0.90805 0.89422 0.89051 0.90317 0.94868 0.88520 0.92108 0.96566 0.89551 0.93489 0.77524 0.91965 0.85318 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 9.17 37.16 0.34 -0.57 16 2 C 0.13 0.77 3.16 -67.93 -0.21 0.56 16 3 C -0.17 -1.11 8.14 37.16 0.30 -0.81 16 4 N -0.60 -5.55 2.40 -166.11 -0.40 -5.95 16 5 C 0.12 1.37 4.76 -4.04 -0.02 1.35 16 6 C 0.04 0.48 5.00 -3.82 -0.02 0.46 16 7 N -0.52 -8.76 4.50 -244.37 -1.10 -9.86 16 8 C 0.02 0.35 9.01 60.07 0.54 0.89 16 9 C 0.05 0.86 5.45 -4.98 -0.03 0.84 16 10 C 0.45 10.61 7.51 -10.99 -0.08 10.52 16 11 O -0.58 -15.53 13.88 5.55 0.08 -15.46 16 12 N -0.57 -14.45 5.29 -10.96 -0.06 -14.51 16 13 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 14 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 15 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 16 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 17 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.54 5.83 7.46 -10.98 -0.08 5.75 16 22 O -0.51 -7.82 14.72 5.55 0.08 -7.74 16 23 C -0.20 -1.44 4.99 -91.78 -0.46 -1.89 16 24 H 0.15 0.67 6.65 -51.93 -0.35 0.32 16 25 C -0.15 -0.77 10.21 -26.69 -0.27 -1.04 16 26 C 0.23 2.07 5.19 -26.69 -0.14 1.93 16 27 F -0.16 -1.44 17.60 2.25 0.04 -1.40 16 28 F -0.14 -1.74 15.71 2.25 0.04 -1.71 16 29 H 0.07 0.47 6.66 -51.93 -0.35 0.12 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.37 5.43 -51.93 -0.28 0.08 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 36 H 0.09 1.18 5.75 -51.93 -0.30 0.88 16 37 H 0.09 1.00 6.43 -51.93 -0.33 0.66 16 38 H 0.08 0.95 5.23 -51.93 -0.27 0.68 16 39 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.10 1.99 5.88 -51.93 -0.31 1.68 16 41 H 0.06 0.95 6.30 -51.93 -0.33 0.62 16 42 H 0.02 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 44 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 45 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 47 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -34.11 392.30 -6.96 -41.07 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.88 Total: 7.49 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -0.37 Total: 10.01 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.83 Total: -54.33 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.16 Total: -23.19 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.11 -6.96 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755810377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.935 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds