Wall clock time and date at job start Wed Apr 1 2020 05:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46847 * 2 1 4 4 N 1.46501 * 109.47468 * 119.99989 * 2 1 3 5 5 C 1.46492 * 120.00260 * 300.00541 * 4 2 1 6 6 C 1.53003 * 109.46915 * 270.00012 * 5 4 2 7 7 N 1.46898 * 109.47392 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00277 * 66.03672 * 7 6 5 9 9 C 1.46896 * 111.00370 * 189.99517 * 7 6 5 10 10 C 1.50696 * 109.47452 * 169.99856 * 9 7 6 11 11 O 1.21292 * 119.99879 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00137 * 180.02562 * 10 9 7 13 13 C 1.37105 * 119.99968 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99700 * 359.71718 * 13 12 10 15 15 C 1.38942 * 119.99884 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00042 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00016 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47016 * 119.99774 * 17 15 13 20 20 H 1.48500 * 109.47415 * 239.99774 * 17 15 13 21 21 C 1.34777 * 119.99638 * 119.99721 * 4 2 1 22 22 O 1.21283 * 119.99618 * 180.02562 * 21 4 2 23 23 C 1.50701 * 120.00287 * 0.02562 * 21 4 2 24 24 H 1.09003 * 115.54911 * 34.40943 * 23 21 4 25 25 C 1.52997 * 117.49758 * 248.74723 * 23 21 4 26 26 C 1.52994 * 117.50155 * 180.08347 * 23 21 4 27 27 F 1.39895 * 117.50435 * 214.98003 * 26 23 21 28 28 F 1.39905 * 117.49621 * 359.97438 * 26 23 21 29 29 H 1.09002 * 109.47355 * 299.99804 * 1 2 3 30 30 H 1.08999 * 109.47396 * 59.99781 * 1 2 3 31 31 H 1.09003 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47048 * 240.00648 * 2 1 3 33 33 H 1.09002 * 109.46944 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47301 * 300.00277 * 3 2 1 35 35 H 1.09003 * 109.47246 * 60.00705 * 3 2 1 36 36 H 1.08993 * 109.47578 * 149.99452 * 5 4 2 37 37 H 1.09003 * 109.47339 * 29.99021 * 5 4 2 38 38 H 1.08993 * 109.47455 * 59.99364 * 6 5 4 39 39 H 1.09006 * 109.46764 * 299.99821 * 6 5 4 40 40 H 1.08997 * 109.47353 * 183.95632 * 8 7 6 41 41 H 1.09001 * 109.47441 * 303.96065 * 8 7 6 42 42 H 1.09009 * 109.46510 * 63.95688 * 8 7 6 43 43 H 1.09000 * 109.47017 * 49.99894 * 9 7 6 44 44 H 1.08996 * 109.47227 * 290.00215 * 9 7 6 45 45 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 46 46 H 0.97005 * 120.00019 * 180.02562 * 16 15 13 47 47 H 1.09006 * 117.50091 * 359.97438 * 25 23 21 48 48 H 1.09000 * 117.50046 * 145.01853 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7190 0.8169 2.9899 7 7 2.3646 1.3183 4.3244 8 6 2.4403 0.2469 5.3266 9 6 3.2152 2.4545 4.7031 10 6 2.6709 3.0946 5.9541 11 8 1.6728 2.6479 6.4789 12 7 3.2932 4.1634 6.4897 13 6 2.7983 4.7454 7.6282 14 1 1.9072 4.3501 8.0932 15 6 3.4401 5.8469 8.1807 16 7 4.5217 6.3305 7.6123 17 14 2.7654 6.6403 9.7314 18 1 1.5483 5.9118 10.1708 19 1 3.7910 6.5817 10.8038 20 1 2.4211 8.0577 9.4527 21 6 2.7932 -1.7864 1.0724 22 8 3.1972 -2.3584 2.0626 23 6 3.1576 -2.3010 -0.2964 24 1 3.2998 -1.5388 -1.0627 25 6 2.5536 -3.6372 -0.7327 26 6 4.0383 -3.5499 -0.3703 27 9 4.9640 -3.6266 -1.4163 28 9 4.4440 -4.1265 0.8381 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 1.6238 -1.0227 3.2290 37 1 0.6905 0.2973 2.4844 38 1 2.7596 1.6494 2.2876 39 1 3.6931 0.3295 3.0322 40 1 2.1058 0.6277 6.2916 41 1 1.8013 -0.5818 5.0217 42 1 3.4703 -0.1002 5.4102 43 1 3.2248 3.1862 3.8952 44 1 4.2304 2.1029 4.8869 45 1 4.0916 4.5204 6.0702 46 1 4.9700 7.0993 7.9982 47 1 1.8929 -4.1444 -0.0295 48 1 2.2987 -3.7544 -1.7859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755810377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:23 Heat of formation + Delta-G solvation = -142.965983 kcal Electronic energy + Delta-G solvation = -31261.332483 eV Core-core repulsion = 26602.056703 eV Total energy + Delta-G solvation = -4659.275780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.70108 -48.38386 -41.44831 -40.36230 -38.49725 -37.40715 -36.69184 -35.86362 -33.30192 -32.92831 -30.92697 -29.24217 -28.12662 -27.22079 -26.27776 -24.63433 -23.56021 -22.79363 -22.25980 -21.02679 -20.01569 -19.81367 -19.39539 -18.00698 -17.86346 -17.75656 -17.20959 -16.85112 -16.66079 -16.44885 -16.23214 -15.90524 -15.63042 -15.37698 -15.09783 -15.03019 -14.98804 -14.77085 -14.60749 -14.48401 -14.15871 -14.00537 -13.85000 -13.63197 -13.47679 -13.26301 -13.08484 -13.02228 -12.79117 -12.58828 -12.54785 -12.39694 -12.32135 -12.12537 -12.11293 -11.87722 -11.68000 -11.47192 -11.09017 -10.93417 -10.35302 -10.00736 -9.82269 -9.31574 -8.46717 -5.95274 1.14488 1.36275 1.41469 1.55702 1.62754 2.00312 2.04143 2.19757 2.29398 2.78718 3.09870 3.17935 3.19730 3.39288 3.52178 3.65509 3.88124 3.92462 4.04840 4.18838 4.25880 4.27748 4.33748 4.41827 4.47117 4.48674 4.54258 4.57501 4.60057 4.70479 4.74316 4.77208 4.84619 4.94052 5.03228 5.04573 5.14315 5.33764 5.41444 5.42658 5.50537 5.81654 6.01016 6.11302 6.29195 6.60284 7.00336 7.12904 7.55777 8.11521 8.71054 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002012 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.449789 B =13916.497390 C =14382.533540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 C -0.172 4.172 4 N -0.590 5.590 5 C 0.125 3.875 6 C 0.045 3.955 7 N -0.525 5.525 8 C 0.029 3.971 9 C 0.058 3.942 10 C 0.444 3.556 11 O -0.612 6.612 12 N -0.575 5.575 13 C -0.330 4.330 14 H 0.080 0.920 15 C -0.015 4.015 16 N -0.922 5.922 17 Si 0.993 3.007 18 H -0.273 1.273 19 H -0.272 1.272 20 H -0.270 1.270 21 C 0.532 3.468 22 O -0.568 6.568 23 C -0.191 4.191 24 H 0.184 0.816 25 C -0.109 4.109 26 C 0.190 3.810 27 F -0.161 7.161 28 F -0.169 7.169 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.020 0.980 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.016 0.984 43 H 0.114 0.886 44 H 0.059 0.941 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.128 0.872 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 -15.217 -26.408 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 C -0.230 4.230 4 N -0.322 5.322 5 C 0.002 3.998 6 C -0.084 4.084 7 N -0.250 5.250 8 C -0.119 4.119 9 C -0.073 4.073 10 C 0.231 3.769 11 O -0.498 6.498 12 N -0.212 5.212 13 C -0.459 4.459 14 H 0.098 0.902 15 C -0.214 4.214 16 N -0.563 5.563 17 Si 0.817 3.183 18 H -0.198 1.198 19 H -0.198 1.198 20 H -0.195 1.195 21 C 0.320 3.680 22 O -0.447 6.447 23 C -0.213 4.213 24 H 0.201 0.799 25 C -0.146 4.146 26 C 0.153 3.847 27 F -0.141 7.141 28 F -0.149 7.149 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.034 0.966 43 H 0.132 0.868 44 H 0.077 0.923 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.146 0.854 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.442 -15.497 -25.499 30.331 hybrid contribution 1.624 0.415 1.199 2.060 sum -3.818 -15.082 -24.301 28.854 Atomic orbital electron populations 1.22171 0.93529 1.02916 1.03433 1.21629 0.95645 0.93788 0.86837 1.22357 1.01529 0.95459 1.03660 1.48052 1.49604 1.26874 1.07655 1.21251 0.98454 0.96729 0.83377 1.22667 0.96779 0.98899 0.90052 1.61524 1.53539 1.07477 1.02445 1.22423 0.98993 0.93733 0.96787 1.21751 0.94764 0.94561 0.96265 1.20653 0.85869 0.82593 0.87809 1.90459 1.28619 1.65343 1.65330 1.41939 1.27014 1.27360 1.24916 1.19691 1.11131 1.11641 1.03444 0.90249 1.26048 0.96093 0.96979 1.02304 1.69683 1.19275 1.25456 1.41876 0.84866 0.78138 0.78019 0.77279 1.19762 1.19759 1.19475 1.19882 0.78049 0.80368 0.89733 1.90808 1.54252 1.58955 1.40693 1.23779 1.03404 0.95622 0.98493 0.79854 1.24502 0.89483 0.92710 1.07914 1.20052 0.87407 1.01692 0.75545 1.93035 1.68818 1.96739 1.55530 1.93072 1.92184 1.85402 1.44273 0.93095 0.89024 0.91861 0.85940 0.92481 0.88915 0.92691 0.91628 0.88201 0.88401 0.96211 0.91934 0.90551 0.96596 0.86815 0.92300 0.77084 0.91336 0.85397 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.17 71.98 0.66 -0.62 16 2 C 0.12 1.09 3.16 44.99 0.14 1.24 16 3 C -0.17 -1.69 8.14 71.98 0.59 -1.11 16 4 N -0.59 -10.00 2.40 -797.85 -1.91 -11.91 16 5 C 0.13 2.84 4.76 86.38 0.41 3.25 16 6 C 0.04 1.17 5.00 86.30 0.43 1.60 16 7 N -0.53 -17.88 4.50 -927.05 -4.17 -22.05 16 8 C 0.03 1.04 9.01 127.69 1.15 2.19 16 9 C 0.06 2.10 5.45 85.56 0.47 2.57 16 10 C 0.44 21.57 7.51 87.66 0.66 22.22 16 11 O -0.61 -34.12 13.88 -3.07 -0.04 -34.16 16 12 N -0.57 -30.01 5.29 -306.99 -1.62 -31.63 16 13 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 14 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 15 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 16 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 17 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C 0.53 10.91 7.46 87.66 0.65 11.57 16 22 O -0.57 -17.70 14.72 -3.04 -0.04 -17.74 16 23 C -0.19 -2.25 4.99 -11.54 -0.06 -2.31 16 24 H 0.18 0.79 6.65 -2.39 -0.02 0.78 16 25 C -0.11 -0.77 10.21 30.62 0.31 -0.46 16 26 C 0.19 3.19 5.19 30.62 0.16 3.35 16 27 F -0.16 -2.73 17.60 44.97 0.79 -1.94 16 28 F -0.17 -4.45 15.71 44.97 0.71 -3.75 16 29 H 0.05 0.59 6.66 -2.39 -0.02 0.58 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.12 0.37 5.43 -2.39 -0.01 0.35 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.76 6.17 -2.39 -0.01 0.75 16 36 H 0.07 1.80 5.75 -2.39 -0.01 1.79 16 37 H 0.10 2.10 6.43 -2.39 -0.02 2.09 16 38 H 0.10 2.19 5.23 -2.39 -0.01 2.18 16 39 H 0.02 0.58 8.12 -2.38 -0.02 0.56 16 40 H 0.06 2.70 5.88 -2.39 -0.01 2.68 16 41 H 0.08 2.47 6.30 -2.39 -0.02 2.45 16 42 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.11 3.53 7.93 -2.39 -0.02 3.51 16 44 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 45 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 46 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 47 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.18 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: -1.00 -78.37 392.30 3.14 -75.23 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.27 Total: 27.46 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 6.85 Total: 25.06 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -7.43 Total: -115.58 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -0.09 Total: -51.91 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 1.50 Total: -5.68 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -78.37 3.14 -75.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755810377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.734 kcal (2) G-P(sol) polarization free energy of solvation -78.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds