Wall clock time and date at job start Wed Apr 1 2020 04:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46932 * 2 1 4 4 C 1.52988 * 109.47446 * 239.99717 * 2 1 3 5 5 C 1.53006 * 109.47190 * 119.99256 * 2 1 3 6 6 H 1.08994 * 109.47174 * 180.02562 * 5 2 1 7 7 C 1.52994 * 109.47312 * 300.00866 * 5 2 1 8 8 N 1.46499 * 109.47044 * 174.99943 * 7 5 2 9 9 C 1.36942 * 119.99847 * 179.97438 * 8 7 5 10 10 H 1.07993 * 120.00343 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99529 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00399 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99439 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47218 * 59.99803 * 13 11 9 15 15 H 1.48497 * 109.46716 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46969 * 299.99382 * 13 11 9 17 17 N 1.46507 * 109.46550 * 60.00276 * 5 2 1 18 18 C 1.34773 * 119.99777 * 84.99944 * 17 5 2 19 19 O 1.21648 * 120.00127 * 359.97438 * 18 17 5 20 20 C 1.47205 * 120.00034 * 179.97438 * 18 17 5 21 21 C 1.38840 * 120.90029 * 359.97438 * 20 18 17 22 22 C 1.39930 * 119.43192 * 180.02562 * 21 20 18 23 23 C 1.35016 * 121.27269 * 359.94006 * 22 21 20 24 24 N 1.36265 * 121.57676 * 0.03814 * 23 22 21 25 25 C 1.36369 * 133.87803 * 180.02562 * 24 23 22 26 26 O 1.35711 * 126.33239 * 0.02562 * 25 24 23 27 27 N 1.31100 * 107.33436 * 179.97438 * 25 24 23 28 28 N 1.28699 * 110.30847 * 0.02562 * 27 25 24 29 29 C 1.31486 * 109.67057 * 359.97438 * 28 27 25 30 30 H 1.08998 * 109.46940 * 299.99829 * 1 2 3 31 31 H 1.08997 * 109.47086 * 60.00353 * 1 2 3 32 32 H 1.09001 * 109.46728 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47031 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46947 * 299.99732 * 3 2 1 35 35 H 1.08994 * 109.47248 * 59.99805 * 3 2 1 36 36 H 1.09001 * 109.47405 * 300.00258 * 4 2 1 37 37 H 1.09006 * 109.47080 * 59.99719 * 4 2 1 38 38 H 1.09002 * 109.47539 * 179.97438 * 4 2 1 39 39 H 1.09007 * 109.46535 * 294.99377 * 7 5 2 40 40 H 1.08990 * 109.47632 * 54.99308 * 7 5 2 41 41 H 0.97002 * 120.00079 * 359.97438 * 8 7 5 42 42 H 0.96999 * 119.99894 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99980 * 264.99507 * 17 5 2 44 44 H 1.08004 * 120.28479 * 0.02604 * 21 20 18 45 45 H 1.07999 * 119.36621 * 179.97438 * 22 21 20 46 46 H 1.07994 * 119.21557 * 180.31327 * 23 22 21 47 47 H 0.96700 * 114.00280 * 90.00170 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0401 -0.7211 1.2494 6 1 3.1300 -0.7207 1.2496 7 6 1.5300 0.0001 2.4985 8 7 1.9176 -0.7564 3.6917 9 6 1.5688 -0.3002 4.9349 10 1 1.0084 0.6174 5.0358 11 6 1.9366 -1.0168 6.0654 12 7 2.6200 -2.1349 5.9425 13 14 1.4614 -0.3941 7.7614 14 1 -0.0175 -0.3038 7.8591 15 1 1.9689 -1.3333 8.7935 16 1 2.0550 0.9495 7.9795 17 7 1.5517 -2.1024 1.2494 18 6 2.2286 -3.0564 0.5800 19 8 3.2447 -2.7705 -0.0246 20 6 1.7382 -4.4444 0.5804 21 6 0.5811 -4.7916 1.2646 22 6 0.1431 -6.1204 1.2449 23 6 0.8236 -7.0728 0.5719 24 7 1.9642 -6.7837 -0.1154 25 6 2.8309 -7.5251 -0.8628 26 8 2.7404 -8.8555 -1.1151 27 7 3.7672 -6.7148 -1.2935 28 7 3.5519 -5.5185 -0.8705 29 6 2.4581 -5.4971 -0.1412 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1301 -0.7209 -1.2493 39 1 1.9646 0.9987 2.5444 40 1 0.4438 0.0783 2.4548 41 1 2.4212 -1.5804 3.6011 42 1 2.8766 -2.6357 6.7326 43 1 0.7413 -2.3303 1.7313 44 1 0.0237 -4.0424 1.8073 45 1 -0.7570 -6.3894 1.7778 46 1 0.4528 -8.0870 0.5748 47 1 2.2358 -9.0714 -1.9113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755836215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:00 Heat of formation + Delta-G solvation = 58.650080 kcal Electronic energy + Delta-G solvation = -31439.542790 eV Core-core repulsion = 27239.698925 eV Total energy + Delta-G solvation = -4199.843865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.66983 -40.15690 -38.40870 -37.93019 -37.26653 -34.48082 -34.03012 -33.02633 -31.35797 -31.02045 -29.20311 -27.71830 -27.12693 -26.71763 -25.14152 -23.88077 -23.54918 -22.95229 -21.54955 -20.96075 -19.42230 -18.60881 -18.31232 -17.52832 -17.45401 -16.99570 -16.49613 -15.73308 -15.57547 -15.48718 -15.00020 -14.73255 -14.24657 -13.92643 -13.80133 -13.44276 -13.18827 -13.13477 -12.92806 -12.80282 -12.71573 -12.45857 -12.17442 -11.95061 -11.86827 -11.79558 -11.35510 -11.27319 -11.19612 -11.01764 -10.82662 -10.74377 -10.58218 -10.48680 -10.26589 -9.95410 -9.80533 -9.76769 -9.66005 -8.92432 -8.63860 -8.30931 -6.98237 -5.80938 -3.10880 -0.01949 0.76949 1.59663 2.32712 2.61728 3.22430 3.38316 3.39836 3.45268 3.45995 3.55220 3.78151 4.04209 4.35008 4.48831 4.53220 4.67688 4.95135 5.05376 5.13817 5.15931 5.21615 5.47833 5.50992 5.54164 5.57866 5.60209 5.72380 5.79446 5.84935 5.91936 5.93318 6.05520 6.08785 6.14546 6.18910 6.24480 6.32347 6.45638 6.48099 6.50119 6.66273 6.73804 6.93012 6.94015 7.64556 7.76723 8.33084 8.36648 8.46874 9.48569 10.04731 10.39931 11.41001 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.003606 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.944399 B = 7762.699333 C = 9769.363062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.130 4.130 5 C 0.151 3.849 6 H 0.090 0.910 7 C 0.142 3.858 8 N -0.732 5.732 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.701 5.701 18 C 0.560 3.440 19 O -0.502 6.502 20 C -0.078 4.078 21 C -0.041 4.041 22 C -0.138 4.138 23 C 0.083 3.917 24 N -0.406 5.406 25 C 0.309 3.691 26 O -0.428 6.428 27 N -0.241 5.241 28 N -0.238 5.238 29 C 0.236 3.764 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.029 0.971 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.400 0.600 44 H 0.158 0.842 45 H 0.164 0.836 46 H 0.172 0.828 47 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 -8.236 -14.904 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.188 4.188 5 C 0.047 3.953 6 H 0.108 0.892 7 C 0.014 3.986 8 N -0.377 5.377 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.352 5.352 18 C 0.345 3.655 19 O -0.378 6.378 20 C -0.085 4.085 21 C -0.066 4.066 22 C -0.159 4.159 23 C -0.039 4.039 24 N -0.099 5.099 25 C 0.009 3.991 26 O -0.226 6.226 27 N -0.090 5.090 28 N -0.084 5.084 29 C -0.016 4.016 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.236 0.764 44 H 0.176 0.824 45 H 0.182 0.818 46 H 0.189 0.811 47 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.285 -7.765 -15.559 19.262 hybrid contribution -1.974 -0.903 1.610 2.702 sum -10.258 -8.668 -13.950 19.364 Atomic orbital electron populations 1.21914 0.94762 1.01503 1.01662 1.20908 0.95773 0.95687 0.95415 1.21885 1.01320 0.94893 1.01756 1.21893 1.01911 0.99509 0.95446 1.21329 1.00100 0.79402 0.94499 0.89181 1.21106 0.97393 0.94791 0.85335 1.42368 1.67044 1.27755 1.00488 1.19154 1.29136 1.05534 0.83606 0.91219 1.24731 1.00764 0.97386 0.97756 1.69655 1.43075 1.16461 1.28630 0.86296 0.77891 0.77818 0.84308 1.21306 1.21749 1.21260 1.45760 1.28940 1.08489 1.52055 1.17322 0.84400 0.83409 0.80392 1.90899 1.23229 1.81530 1.42108 1.20280 0.95332 0.92670 1.00201 1.21929 0.93524 0.97115 0.93984 1.20834 1.02037 0.92146 1.00903 1.21713 0.85604 1.01865 0.94718 1.44057 1.19186 1.10790 1.35885 1.21768 0.90701 0.86242 1.00349 1.85028 1.75735 1.12108 1.49742 1.74716 1.18996 0.96729 1.18606 1.75038 1.11168 1.09977 1.12170 1.22610 0.94870 0.82650 1.01485 0.91878 0.93176 0.93002 0.92459 0.92884 0.91909 0.93017 0.94000 0.91749 0.94553 0.95322 0.78032 0.93442 0.76379 0.82411 0.81831 0.81117 0.74083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.97 37.16 0.30 -1.33 16 2 C -0.08 -1.01 0.62 -154.51 -0.10 -1.11 16 3 C -0.14 -1.74 8.12 37.16 0.30 -1.44 16 4 C -0.13 -1.83 6.99 37.15 0.26 -1.57 16 5 C 0.15 2.42 1.69 -67.93 -0.11 2.30 16 6 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 7 C 0.14 2.57 5.10 -4.05 -0.02 2.55 16 8 N -0.73 -17.22 5.43 -59.91 -0.33 -17.54 16 9 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 10 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 13 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 N -0.70 -10.48 3.59 -54.95 -0.20 -10.67 16 18 C 0.56 9.21 6.12 -12.62 -0.08 9.14 16 19 O -0.50 -9.93 13.40 5.24 0.07 -9.86 16 20 C -0.08 -1.10 6.06 -102.69 -0.62 -1.73 16 21 C -0.04 -0.41 9.63 -38.73 -0.37 -0.79 16 22 C -0.14 -1.01 9.91 -40.09 -0.40 -1.40 16 23 C 0.08 0.66 10.94 -16.73 -0.18 0.48 16 24 N -0.41 -4.96 2.97 -62.51 -0.19 -5.15 16 25 C 0.31 3.98 9.41 -88.65 -0.83 3.14 16 26 O -0.43 -3.77 13.65 -18.84 -0.26 -4.03 16 27 N -0.24 -4.01 12.20 29.70 0.36 -3.64 16 28 N -0.24 -4.39 11.76 32.37 0.38 -4.01 16 29 C 0.24 3.71 7.75 -153.91 -1.19 2.52 16 30 H 0.06 0.74 6.32 -51.93 -0.33 0.41 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.57 7.60 -51.93 -0.39 0.18 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 36 H 0.05 0.78 5.77 -51.93 -0.30 0.48 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 39 H 0.04 0.68 6.71 -51.92 -0.35 0.33 16 40 H 0.03 0.50 6.17 -51.93 -0.32 0.18 16 41 H 0.39 9.81 7.33 -40.82 -0.30 9.51 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.40 5.36 6.70 -40.82 -0.27 5.08 16 44 H 0.16 1.30 6.48 -52.48 -0.34 0.96 16 45 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.40 1.18 9.06 45.56 0.41 1.59 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -36.60 381.36 -7.40 -44.00 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.40 Total: 11.21 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -3.30 Total: 3.82 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: 0.76 Total: -67.50 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.19 Total: -13.89 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.60 -7.40 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755836215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.653 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds