Wall clock time and date at job start Wed Apr 1 2020 04:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46932 * 2 1 4 4 C 1.52988 * 109.47446 * 239.99717 * 2 1 3 5 5 C 1.53006 * 109.47190 * 119.99256 * 2 1 3 6 6 H 1.08994 * 109.47174 * 180.02562 * 5 2 1 7 7 C 1.52994 * 109.47312 * 300.00866 * 5 2 1 8 8 N 1.46499 * 109.47044 * 174.99943 * 7 5 2 9 9 C 1.36942 * 119.99847 * 179.97438 * 8 7 5 10 10 H 1.07993 * 120.00343 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99529 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00399 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99439 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47218 * 59.99803 * 13 11 9 15 15 H 1.48497 * 109.46716 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46969 * 299.99382 * 13 11 9 17 17 N 1.46507 * 109.46550 * 60.00276 * 5 2 1 18 18 C 1.34773 * 119.99777 * 84.99944 * 17 5 2 19 19 O 1.21648 * 120.00127 * 359.97438 * 18 17 5 20 20 C 1.47205 * 120.00034 * 179.97438 * 18 17 5 21 21 C 1.38840 * 120.90029 * 359.97438 * 20 18 17 22 22 C 1.39930 * 119.43192 * 180.02562 * 21 20 18 23 23 C 1.35016 * 121.27269 * 359.94006 * 22 21 20 24 24 N 1.36265 * 121.57676 * 0.03814 * 23 22 21 25 25 C 1.36369 * 133.87803 * 180.02562 * 24 23 22 26 26 O 1.35711 * 126.33239 * 0.02562 * 25 24 23 27 27 N 1.31100 * 107.33436 * 179.97438 * 25 24 23 28 28 N 1.28699 * 110.30847 * 0.02562 * 27 25 24 29 29 C 1.31486 * 109.67057 * 359.97438 * 28 27 25 30 30 H 1.08998 * 109.46940 * 299.99829 * 1 2 3 31 31 H 1.08997 * 109.47086 * 60.00353 * 1 2 3 32 32 H 1.09001 * 109.46728 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47031 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46947 * 299.99732 * 3 2 1 35 35 H 1.08994 * 109.47248 * 59.99805 * 3 2 1 36 36 H 1.09001 * 109.47405 * 300.00258 * 4 2 1 37 37 H 1.09006 * 109.47080 * 59.99719 * 4 2 1 38 38 H 1.09002 * 109.47539 * 179.97438 * 4 2 1 39 39 H 1.09007 * 109.46535 * 294.99377 * 7 5 2 40 40 H 1.08990 * 109.47632 * 54.99308 * 7 5 2 41 41 H 0.97002 * 120.00079 * 359.97438 * 8 7 5 42 42 H 0.96999 * 119.99894 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99980 * 264.99507 * 17 5 2 44 44 H 1.08004 * 120.28479 * 0.02604 * 21 20 18 45 45 H 1.07999 * 119.36621 * 179.97438 * 22 21 20 46 46 H 1.07994 * 119.21557 * 180.31327 * 23 22 21 47 47 H 0.96700 * 114.00280 * 90.00170 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0401 -0.7211 1.2494 6 1 3.1300 -0.7207 1.2496 7 6 1.5300 0.0001 2.4985 8 7 1.9176 -0.7564 3.6917 9 6 1.5688 -0.3002 4.9349 10 1 1.0084 0.6174 5.0358 11 6 1.9366 -1.0168 6.0654 12 7 2.6200 -2.1349 5.9425 13 14 1.4614 -0.3941 7.7614 14 1 -0.0175 -0.3038 7.8591 15 1 1.9689 -1.3333 8.7935 16 1 2.0550 0.9495 7.9795 17 7 1.5517 -2.1024 1.2494 18 6 2.2286 -3.0564 0.5800 19 8 3.2447 -2.7705 -0.0246 20 6 1.7382 -4.4444 0.5804 21 6 0.5811 -4.7916 1.2646 22 6 0.1431 -6.1204 1.2449 23 6 0.8236 -7.0728 0.5719 24 7 1.9642 -6.7837 -0.1154 25 6 2.8309 -7.5251 -0.8628 26 8 2.7404 -8.8555 -1.1151 27 7 3.7672 -6.7148 -1.2935 28 7 3.5519 -5.5185 -0.8705 29 6 2.4581 -5.4971 -0.1412 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1301 -0.7209 -1.2493 39 1 1.9646 0.9987 2.5444 40 1 0.4438 0.0783 2.4548 41 1 2.4212 -1.5804 3.6011 42 1 2.8766 -2.6357 6.7326 43 1 0.7413 -2.3303 1.7313 44 1 0.0237 -4.0424 1.8073 45 1 -0.7570 -6.3894 1.7778 46 1 0.4528 -8.0870 0.5748 47 1 2.2358 -9.0714 -1.9113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755836215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:59 Heat of formation + Delta-G solvation = 29.497445 kcal Electronic energy + Delta-G solvation = -31440.806944 eV Core-core repulsion = 27239.698925 eV Total energy + Delta-G solvation = -4201.108018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.64595 -41.37723 -39.31428 -38.74061 -38.46888 -36.15756 -35.15241 -34.24062 -32.91778 -32.17131 -30.26189 -29.20579 -28.10141 -27.84211 -26.22641 -25.46934 -24.53668 -24.04242 -23.01006 -22.03801 -20.36169 -19.84709 -19.26354 -19.06064 -18.44038 -18.18149 -17.59080 -16.88051 -16.84846 -16.41702 -16.32767 -15.81335 -15.53381 -15.25650 -15.22084 -14.80407 -14.55649 -14.17432 -14.04550 -13.72735 -13.71651 -13.61828 -13.26758 -13.06032 -12.98404 -12.90849 -12.87690 -12.68301 -12.50330 -12.35370 -12.22654 -12.05887 -11.98069 -11.71697 -11.60300 -11.56151 -11.25879 -10.96842 -10.82111 -10.73724 -9.90974 -9.23692 -8.94342 -7.89119 -5.18325 -0.86361 -0.09332 0.70237 1.40451 1.51544 1.54163 1.59768 1.60782 2.10309 2.46391 2.54266 2.60055 2.97715 3.17873 3.45235 3.56042 3.68933 3.73132 3.77525 3.89728 4.07566 4.27687 4.31024 4.39394 4.42959 4.51505 4.67369 4.69140 4.73715 4.84991 4.85227 4.88368 4.95365 5.00506 5.10755 5.11783 5.13613 5.20966 5.28743 5.35425 5.46654 5.55768 5.56468 5.59564 5.67800 6.30766 6.30861 6.58331 7.27954 7.30290 7.38678 8.12645 8.36394 9.33433 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.003606 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.944399 B = 7762.699333 C = 9769.363062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.120 4.120 5 C 0.160 3.840 6 H 0.051 0.949 7 C 0.146 3.854 8 N -0.742 5.742 9 C -0.240 4.240 10 H 0.080 0.920 11 C -0.070 4.070 12 N -0.968 5.968 13 Si 0.969 3.031 14 H -0.272 1.272 15 H -0.302 1.302 16 H -0.284 1.284 17 N -0.693 5.693 18 C 0.559 3.441 19 O -0.551 6.551 20 C -0.134 4.134 21 C -0.004 4.004 22 C -0.137 4.137 23 C 0.095 3.905 24 N -0.406 5.406 25 C 0.328 3.672 26 O -0.420 6.420 27 N -0.288 5.288 28 N -0.303 5.303 29 C 0.226 3.774 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.373 0.627 42 H 0.248 0.752 43 H 0.409 0.591 44 H 0.178 0.822 45 H 0.216 0.784 46 H 0.222 0.778 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 -9.080 -14.389 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.178 4.178 5 C 0.055 3.945 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.372 4.372 10 H 0.098 0.902 11 C -0.263 4.263 12 N -0.619 5.619 13 Si 0.799 3.201 14 H -0.198 1.198 15 H -0.228 1.228 16 H -0.211 1.211 17 N -0.345 5.345 18 C 0.346 3.654 19 O -0.430 6.430 20 C -0.141 4.141 21 C -0.029 4.029 22 C -0.158 4.158 23 C -0.026 4.026 24 N -0.099 5.099 25 C 0.026 3.974 26 O -0.223 6.223 27 N -0.137 5.137 28 N -0.148 5.148 29 C -0.028 4.028 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.246 0.754 44 H 0.195 0.805 45 H 0.232 0.768 46 H 0.238 0.762 47 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -12.507 -8.585 -15.088 21.396 hybrid contribution -0.790 -0.759 1.423 1.796 sum -13.297 -9.344 -13.666 21.234 Atomic orbital electron populations 1.21876 0.92559 1.02223 1.02671 1.20853 0.97378 0.95589 0.93264 1.21887 1.00570 0.94386 1.02904 1.21767 1.00012 0.99201 0.96785 1.21111 0.97947 0.80346 0.95071 0.93059 1.21232 0.98443 0.94203 0.84202 1.42547 1.66878 1.27711 1.01405 1.19581 1.27682 1.05259 0.84652 0.90215 1.25476 1.01664 0.97893 1.01239 1.69827 1.45141 1.17992 1.28900 0.85281 0.78156 0.76791 0.79903 1.19759 1.22826 1.21085 1.45612 1.28988 1.07940 1.51918 1.17721 0.83695 0.84584 0.79422 1.90867 1.25346 1.82472 1.44269 1.20058 0.98182 0.91231 1.04627 1.22394 0.90913 0.99194 0.90362 1.21438 1.03356 0.90279 1.00690 1.22776 0.83305 1.04408 0.92132 1.44196 1.20159 1.09358 1.36203 1.21712 0.89751 0.87005 0.98894 1.85005 1.76476 1.09310 1.51521 1.74527 1.21324 0.97130 1.20706 1.74888 1.13732 1.11269 1.14924 1.22762 0.94551 0.84370 1.01113 0.91622 0.91343 0.92472 0.93808 0.90709 0.91697 0.94261 0.91992 0.94650 0.94587 0.92980 0.79535 0.94290 0.75367 0.80496 0.76758 0.76179 0.70783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.97 71.98 0.57 -2.25 16 2 C -0.07 -1.82 0.62 -52.18 -0.03 -1.85 16 3 C -0.14 -3.37 8.12 71.98 0.58 -2.79 16 4 C -0.12 -3.50 6.99 71.98 0.50 -2.99 16 5 C 0.16 5.28 1.69 44.99 0.08 5.36 16 6 H 0.05 2.09 7.58 -2.39 -0.02 2.08 16 7 C 0.15 5.23 5.10 86.38 0.44 5.67 16 8 N -0.74 -35.08 5.43 -343.47 -1.87 -36.95 16 9 C -0.24 -12.52 9.99 84.03 0.84 -11.68 16 10 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 11 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 12 N -0.97 -57.44 13.06 21.65 0.28 -57.15 16 13 Si 0.97 44.20 29.55 68.60 2.03 46.22 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 17 N -0.69 -21.23 3.59 -445.99 -1.60 -22.83 16 18 C 0.56 19.56 6.12 86.60 0.53 20.09 16 19 O -0.55 -23.97 13.40 -4.18 -0.06 -24.03 16 20 C -0.13 -3.89 6.06 -18.61 -0.11 -4.00 16 21 C 0.00 -0.07 9.63 22.82 0.22 0.15 16 22 C -0.14 -1.37 9.91 21.94 0.22 -1.15 16 23 C 0.09 1.12 10.94 83.26 0.91 2.03 16 24 N -0.41 -9.40 2.97 -462.37 -1.37 -10.77 16 25 C 0.33 8.28 9.41 179.66 1.69 9.97 16 26 O -0.42 -6.47 13.65 -90.32 -1.23 -7.71 16 27 N -0.29 -10.16 12.20 -173.36 -2.12 -12.28 16 28 N -0.30 -12.12 11.76 -51.51 -0.61 -12.73 16 29 C 0.23 7.38 7.75 135.68 1.05 8.43 16 30 H 0.06 1.34 6.32 -2.39 -0.02 1.32 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.13 7.60 -2.39 -0.02 1.11 16 33 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.53 6.54 -2.39 -0.02 1.52 16 36 H 0.04 1.23 5.77 -2.39 -0.01 1.22 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.03 1.21 7.53 -2.39 -0.02 1.19 16 39 H 0.04 1.33 6.71 -2.38 -0.02 1.31 16 40 H 0.05 1.68 6.17 -2.39 -0.01 1.67 16 41 H 0.37 19.47 7.33 -92.71 -0.68 18.79 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.41 10.69 6.70 -92.71 -0.62 10.07 16 44 H 0.18 2.38 6.48 -2.91 -0.02 2.36 16 45 H 0.22 0.03 8.06 -2.91 -0.02 0.01 16 46 H 0.22 0.36 8.06 -2.91 -0.02 0.34 16 47 H 0.43 1.27 9.06 -74.06 -0.67 0.60 16 Total: -1.00 -87.03 381.36 0.50 -86.53 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.92 Total: 30.08 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 7.96 Total: 21.60 kcal Atomic # 7 Polarization: -145.42 SS G_CDS: -7.28 Total: -152.70 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -1.29 Total: -31.73 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -87.03 0.50 -86.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755836215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.027 kcal (2) G-P(sol) polarization free energy of solvation -87.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds