Wall clock time and date at job start Wed Apr 1 2020 04:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00302 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99816 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46776 * 90.00420 * 15 13 11 17 17 H 1.48495 * 109.47232 * 210.00549 * 15 13 11 18 18 H 1.48502 * 109.46976 * 330.00692 * 15 13 11 19 19 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 20 20 C 1.34775 * 120.00290 * 275.00553 * 19 2 1 21 21 O 1.21284 * 120.00239 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99766 * 179.97438 * 20 19 2 23 23 C 1.53000 * 112.84987 * 48.80575 * 22 20 19 24 24 F 1.39903 * 109.46902 * 309.66288 * 23 22 20 25 25 F 1.39899 * 109.47346 * 69.66318 * 23 22 20 26 26 C 1.53781 * 113.61495 * 277.49306 * 22 20 19 27 27 C 1.53782 * 87.08129 * 220.02033 * 26 22 20 28 28 C 1.53776 * 87.07969 * 25.43699 * 27 26 22 29 29 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.00908 * 110.99847 * 56.04959 * 6 5 4 37 37 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 38 38 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 39 39 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 40 40 H 0.96996 * 120.00205 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99849 * 95.00425 * 19 2 1 42 42 H 1.09002 * 109.46605 * 189.66699 * 23 22 20 43 43 H 1.08999 * 113.61343 * 334.57241 * 26 22 20 44 44 H 1.09002 * 113.60829 * 105.46882 * 26 22 20 45 45 H 1.08993 * 113.61508 * 270.88140 * 27 26 22 46 46 H 1.09001 * 113.60776 * 139.98460 * 27 26 22 47 47 H 1.09005 * 113.61117 * 220.01723 * 28 27 26 48 48 H 1.09003 * 113.61806 * 89.11290 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0547 -1.3061 -2.5127 7 6 5.5183 -1.2225 -2.6081 8 6 5.9826 -1.9423 -3.8479 9 8 5.1740 -2.4724 -4.5802 10 7 7.2966 -1.9971 -4.1430 11 6 7.7191 -2.6514 -5.2712 12 1 6.9991 -3.1235 -5.9233 13 6 9.0737 -2.7084 -5.5751 14 7 9.4787 -3.3352 -6.6568 15 14 10.3192 -1.8926 -4.4469 16 1 10.7637 -2.8642 -3.4156 17 1 11.4902 -1.4455 -5.2432 18 1 9.6937 -0.7196 -3.7850 19 7 2.0183 -0.6905 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8588 1.1587 2.4115 22 6 2.6487 -0.7288 3.5878 23 6 3.9193 -1.5407 3.3285 24 9 3.7314 -2.3550 2.2065 25 9 4.9902 -0.6703 3.0989 26 6 1.5566 -1.5120 4.3352 27 6 2.2035 -1.0160 5.6392 28 6 2.7382 0.1760 4.8281 29 1 -0.3635 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.6169 -0.9412 -3.3454 37 1 5.8197 -0.1764 -2.6613 38 1 5.9666 -1.6856 -1.7291 39 1 7.9433 -1.5734 -3.5572 40 1 10.4243 -3.3746 -6.8692 41 1 2.2490 -1.6317 1.1527 42 1 4.1364 -2.1628 4.1968 43 1 0.5513 -1.1240 4.1713 44 1 1.6223 -2.5914 4.1983 45 1 2.9863 -1.6741 6.0161 46 1 1.4810 -0.7340 6.4052 47 1 3.7579 0.4595 5.0891 48 1 2.0559 1.0256 4.7989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268390441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:18 Heat of formation + Delta-G solvation = -155.312893 kcal Electronic energy + Delta-G solvation = -31326.160670 eV Core-core repulsion = 26666.349488 eV Total energy + Delta-G solvation = -4659.811182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.52057 -47.49011 -40.89135 -38.72959 -38.37880 -36.80230 -35.04629 -33.85870 -31.99552 -31.62127 -29.46550 -28.78661 -26.42022 -26.31385 -25.27621 -23.93689 -22.47872 -21.78854 -20.88991 -19.83254 -19.33959 -18.51814 -18.26433 -17.65519 -17.56329 -16.59755 -16.46805 -16.09198 -15.60543 -15.33991 -15.05873 -14.93351 -14.77282 -14.37211 -14.22209 -13.90539 -13.82341 -13.71814 -13.56902 -13.18788 -13.09240 -13.00529 -12.87384 -12.60176 -12.42380 -12.35963 -12.22050 -12.12463 -11.80851 -11.69178 -11.31051 -11.27839 -11.13560 -11.10237 -11.01453 -10.92878 -10.57396 -10.03707 -9.95645 -9.55193 -9.35670 -8.56853 -8.17226 -8.11046 -6.29250 -3.80486 2.15254 2.76065 3.04857 3.09122 3.09789 3.16753 3.48088 3.67173 3.73222 3.76668 4.01990 4.06524 4.12396 4.18294 4.41546 4.58447 4.67384 4.76160 4.79905 4.93505 4.97562 5.03634 5.12569 5.22121 5.25790 5.26499 5.31532 5.33095 5.41780 5.48597 5.56252 5.61500 5.68909 5.70117 5.83801 5.90067 5.92323 5.96682 6.07337 6.26823 7.11896 7.21049 7.59828 7.61775 7.87773 8.16570 8.62060 8.96956 9.44660 9.85190 10.83898 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.002309 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.824249 B =12125.594154 C =13392.100730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.059 3.941 6 N -0.668 5.668 7 C 0.048 3.952 8 C 0.451 3.549 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.717 5.717 20 C 0.532 3.468 21 O -0.532 6.532 22 C -0.175 4.175 23 C 0.289 3.711 24 F -0.194 7.194 25 F -0.193 7.193 26 C -0.110 4.110 27 C -0.145 4.145 28 C -0.103 4.103 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.350 0.650 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.371 0.629 40 H 0.273 0.727 41 H 0.406 0.594 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.944 6.154 27.894 32.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.163 4.163 5 C -0.071 4.071 6 N -0.300 5.300 7 C -0.085 4.085 8 C 0.237 3.763 9 O -0.447 6.447 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.372 5.372 20 C 0.316 3.684 21 O -0.408 6.408 22 C -0.179 4.179 23 C 0.235 3.765 24 F -0.175 7.175 25 F -0.174 7.174 26 C -0.148 4.148 27 C -0.183 4.183 28 C -0.141 4.141 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.169 0.831 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.246 0.754 42 H 0.141 0.859 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.483 5.936 27.509 32.614 hybrid contribution 1.595 1.061 0.266 1.934 sum -14.887 6.997 27.775 32.281 Atomic orbital electron populations 1.22147 0.94929 1.02301 1.02539 1.21015 0.94112 0.97533 0.83739 0.89442 1.21865 0.95633 1.02074 0.96756 1.21970 0.94597 0.96099 0.94431 1.60079 1.04639 1.59982 1.05335 1.21701 0.89380 0.98736 0.98683 1.19713 0.82929 0.85749 0.87945 1.90557 1.53000 1.49240 1.51871 1.42212 1.06005 1.50603 1.24259 1.19432 0.93484 1.30223 1.00165 0.86280 1.25039 0.96985 0.97483 0.96686 1.69620 1.16241 1.41861 1.24479 0.86672 0.81936 0.79795 0.80998 1.19581 1.20190 1.19519 1.46470 1.66437 1.15064 1.09273 1.19829 0.77867 0.86961 0.83699 1.90698 1.50210 1.15394 1.84537 1.23410 0.97212 1.00725 0.96536 1.21526 0.83646 0.84168 0.87183 1.92896 1.95031 1.73575 1.55977 1.93041 1.57587 1.71201 1.95601 1.22868 0.97285 1.00161 0.94474 1.22969 1.00852 0.97725 0.96733 1.22816 1.03723 0.97299 0.90256 0.92261 0.91368 0.92247 0.90068 0.90111 0.91031 0.95567 0.83104 0.93825 0.89529 0.79681 0.91635 0.75411 0.85927 0.88308 0.89710 0.89474 0.89932 0.89998 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 2 C 0.14 1.34 2.57 -67.94 -0.17 1.17 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 4 C -0.13 -1.25 5.01 -26.74 -0.13 -1.38 16 5 C 0.06 0.73 5.57 -3.83 -0.02 0.71 16 6 N -0.67 -10.67 6.13 -115.06 -0.70 -11.37 16 7 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 8 C 0.45 10.54 7.82 -10.99 -0.09 10.45 16 9 O -0.56 -15.46 15.78 5.55 0.09 -15.37 16 10 N -0.59 -14.46 5.09 -10.97 -0.06 -14.52 16 11 C -0.30 -8.76 10.16 -14.94 -0.15 -8.91 16 12 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 13 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 14 N -0.88 -26.06 13.96 55.50 0.77 -25.29 16 15 Si 0.88 19.73 27.74 -169.99 -4.71 15.01 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 19 N -0.72 -6.73 4.26 -53.81 -0.23 -6.95 16 20 C 0.53 5.46 6.87 -10.98 -0.08 5.39 16 21 O -0.53 -7.19 15.56 5.55 0.09 -7.10 16 22 C -0.17 -1.23 0.92 -154.84 -0.14 -1.37 16 23 C 0.29 2.02 4.57 37.16 0.17 2.19 16 24 F -0.19 -1.66 14.50 2.25 0.03 -1.62 16 25 F -0.19 -1.93 17.06 2.25 0.04 -1.89 16 26 C -0.11 -0.49 7.20 -25.92 -0.19 -0.68 16 27 C -0.15 -0.51 7.73 -25.92 -0.20 -0.71 16 28 C -0.10 -0.63 6.93 -25.92 -0.18 -0.81 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.35 5.70 8.43 -39.29 -0.33 5.36 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.37 8.00 5.76 -40.82 -0.24 7.76 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.41 3.52 6.08 -40.82 -0.25 3.27 16 42 H 0.12 0.42 7.34 -51.93 -0.38 0.04 16 43 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16 44 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 45 H 0.09 0.18 7.64 -51.93 -0.40 -0.21 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.08 0.49 7.94 -51.93 -0.41 0.07 16 48 H 0.11 0.80 7.43 -51.93 -0.39 0.42 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -35.43 398.43 -7.03 -42.46 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.39 Total: 13.73 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.96 Total: 6.91 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.22 Total: -58.13 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.17 Total: -22.47 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.07 Total: -3.52 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.01 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.43 -7.03 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268390441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.856 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds