Wall clock time and date at job start Wed Apr 1 2020 04:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.48069 * 2 1 4 4 C 1.53002 * 109.47217 * 239.99763 * 2 1 3 5 5 C 1.50695 * 109.46770 * 65.00495 * 4 2 1 6 6 H 1.07998 * 120.00137 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99788 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00451 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00047 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47052 * 89.99867 * 9 7 5 11 11 H 1.48500 * 109.47274 * 209.99739 * 9 7 5 12 12 H 1.48503 * 109.47279 * 329.99788 * 9 7 5 13 13 C 1.50702 * 109.47144 * 120.00270 * 2 1 3 14 14 N 1.30302 * 126.34511 * 60.01518 * 13 2 1 15 15 N 1.28534 * 110.04959 * 179.97438 * 14 13 2 16 16 C 1.31216 * 109.86207 * 0.02562 * 15 14 13 17 17 N 1.38577 * 126.46995 * 180.02562 * 16 15 14 18 18 C 1.48516 * 111.00104 * 115.37444 * 17 16 15 19 19 C 1.54295 * 104.71145 * 200.72759 * 18 17 16 20 20 H 1.09003 * 113.14966 * 260.56262 * 19 18 17 21 21 C 1.51215 * 109.21104 * 134.18084 * 19 18 17 22 22 O 1.21220 * 125.31261 * 68.81343 * 21 19 18 23 23 N 1.33814 * 109.37490 * 248.77514 * 21 19 18 24 24 C 1.46498 * 122.73301 * 180.02562 * 23 21 19 25 25 C 1.35311 * 114.74422 * 359.71454 * 23 21 19 26 26 O 1.21233 * 126.13448 * 180.35880 * 25 23 21 27 27 C 1.51216 * 108.55589 * 0.45411 * 25 23 21 28 28 H 1.08997 * 112.68243 * 237.06450 * 27 25 23 29 29 C 1.48512 * 111.00103 * 359.96975 * 17 16 15 30 30 N 1.36447 * 107.05417 * 359.97438 * 16 15 14 31 31 C 1.46508 * 127.13445 * 179.97438 * 30 16 15 32 32 H 1.09003 * 109.47029 * 59.99559 * 1 2 3 33 33 H 1.08995 * 109.47612 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46843 * 300.00346 * 1 2 3 35 35 H 1.09000 * 109.47623 * 185.00666 * 4 2 1 36 36 H 1.09006 * 109.46964 * 305.00524 * 4 2 1 37 37 H 0.96993 * 120.00758 * 179.97438 * 8 7 5 38 38 H 1.09000 * 110.38967 * 319.52842 * 18 17 16 39 39 H 1.08996 * 110.39706 * 81.91824 * 18 17 16 40 40 H 1.08998 * 109.47462 * 90.00622 * 24 23 21 41 41 H 1.09003 * 109.46957 * 210.00231 * 24 23 21 42 42 H 1.08997 * 109.47553 * 329.99998 * 24 23 21 43 43 H 1.09003 * 110.38815 * 278.07973 * 29 17 16 44 44 H 1.08996 * 110.39195 * 40.46784 * 29 17 16 45 45 H 1.08995 * 109.46788 * 89.97773 * 31 30 16 46 46 H 1.08999 * 109.46620 * 209.97523 * 31 30 16 47 47 H 1.08997 * 109.47091 * 329.97905 * 31 30 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9742 -2.3756 7 6 1.9924 -0.4023 -3.7282 8 7 2.6746 -1.5199 -3.8512 9 14 1.4977 0.5621 -5.2496 10 1 2.5631 1.5416 -5.5829 11 1 1.3104 -0.3720 -6.3887 12 1 0.2266 1.2835 -4.9869 13 6 2.0323 -0.7105 1.2304 14 7 1.7952 -1.9492 1.5578 15 7 2.3768 -2.2304 2.6690 16 6 3.0209 -1.1774 3.1140 17 7 3.7642 -1.0988 4.2809 18 6 5.1996 -0.8612 3.9827 19 6 5.9450 -1.3208 5.2530 20 1 6.2219 -0.4959 5.9095 21 6 7.1297 -2.1718 4.8543 22 8 8.1226 -1.7690 4.2874 23 7 6.9114 -3.4387 5.2256 24 6 7.8765 -4.5134 4.9812 25 6 5.7305 -3.6499 5.8516 26 8 5.3272 -4.7106 6.2782 27 6 4.9866 -2.3358 5.9319 28 1 4.7321 -2.0586 6.9548 29 6 3.7524 -2.3939 5.0077 30 7 2.8216 -0.1748 2.2102 31 6 3.3440 1.1923 2.2762 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 3.1263 -0.7997 -1.2056 36 1 1.6052 -1.7199 -1.2951 37 1 2.9213 -1.8432 -4.7318 38 1 5.5122 -1.4545 3.1234 39 1 5.3792 0.1981 3.7994 40 1 8.5575 -4.5899 5.8288 41 1 7.3454 -5.4569 4.8555 42 1 8.4446 -4.2930 4.0775 43 1 2.8407 -2.4902 5.5973 44 1 3.8417 -3.2237 4.3066 45 1 4.3132 1.2352 1.7795 46 1 2.6505 1.8706 1.7791 47 1 3.4569 1.4881 3.3192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339977049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:04 Heat of formation + Delta-G solvation = 34.210772 kcal Electronic energy + Delta-G solvation = -31084.401784 eV Core-core repulsion = 26883.498151 eV Total energy + Delta-G solvation = -4200.903633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.98290 -42.44004 -39.08430 -38.72486 -36.16356 -35.44313 -34.70778 -33.24188 -32.12913 -30.07134 -28.97374 -27.71838 -27.20272 -26.93415 -25.08412 -24.11781 -23.54861 -22.24833 -21.48823 -20.87803 -20.08874 -19.12417 -17.95632 -17.29300 -16.94846 -16.80373 -16.61570 -16.32219 -15.95594 -15.49976 -15.32634 -14.78330 -14.58958 -14.46934 -14.10718 -13.90783 -13.71399 -13.31396 -13.29149 -13.08525 -12.99368 -12.96739 -12.41088 -12.35922 -12.24925 -11.92033 -11.81425 -11.36975 -11.17352 -11.07904 -10.97223 -10.79786 -10.56748 -10.45674 -10.40362 -10.23158 -10.15056 -9.95669 -9.70553 -9.46156 -9.15505 -8.40129 -8.20108 -6.03600 -4.07607 0.98200 1.82305 2.00600 2.15258 2.39872 3.11051 3.28853 3.30640 3.36212 3.38292 3.42133 3.62431 3.69352 3.94285 4.38682 4.41047 4.57346 4.62703 4.69650 4.74526 4.83828 4.88559 4.94347 5.00772 5.06499 5.11249 5.17011 5.24380 5.29082 5.32178 5.36868 5.41710 5.52816 5.82013 5.99588 6.07477 6.17591 6.20949 6.27202 6.62433 6.67629 6.77304 6.83083 6.99580 7.22343 7.25657 7.57451 7.74060 7.94810 8.30789 8.97839 9.08232 9.56272 11.07434 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.002555 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.280775 B =10958.012621 C =11519.870537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.003 4.003 3 H 0.074 0.926 4 C 0.039 3.961 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.222 3.778 14 N -0.281 5.281 15 N -0.313 5.313 16 C 0.312 3.688 17 N -0.419 5.419 18 C 0.048 3.952 19 C -0.119 4.119 20 H 0.148 0.852 21 C 0.533 3.467 22 O -0.472 6.472 23 N -0.580 5.580 24 C 0.066 3.934 25 C 0.537 3.463 26 O -0.462 6.462 27 C -0.126 4.126 28 H 0.147 0.853 29 C 0.068 3.932 30 N -0.481 5.481 31 C 0.075 3.925 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.013 0.987 36 H 0.032 0.968 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 3.338 22.852 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 H 0.092 0.908 4 C 0.001 3.999 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.046 4.046 14 N -0.119 5.119 15 N -0.157 5.157 16 C -0.045 4.045 17 N -0.142 5.142 18 C -0.080 4.080 19 C -0.141 4.141 20 H 0.166 0.834 21 C 0.321 3.679 22 O -0.342 6.342 23 N -0.324 5.324 24 C -0.075 4.075 25 C 0.325 3.675 26 O -0.331 6.331 27 C -0.148 4.148 28 H 0.165 0.835 29 C -0.060 4.060 30 N -0.175 5.175 31 C -0.068 4.068 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.840 1.840 22.881 24.257 hybrid contribution 0.861 1.196 -1.216 1.910 sum 8.701 3.035 21.666 23.544 Atomic orbital electron populations 1.21682 0.93433 1.02611 1.00715 1.20034 0.96368 0.97634 0.88347 0.90825 1.19106 0.96090 0.96312 0.88412 1.21126 1.35647 1.08515 0.90678 0.92288 1.25005 0.95132 0.94996 0.99118 1.69974 1.38411 1.20868 1.23632 0.86599 0.78909 0.79744 0.82769 1.20744 1.21206 1.19770 1.25709 0.93995 0.91898 0.92968 1.74047 1.20276 1.11224 1.06395 1.74540 1.13528 1.20546 1.07108 1.22403 1.04126 0.86767 0.91185 1.62223 1.07147 1.31494 1.13368 1.23123 0.85596 1.03994 0.95279 1.22871 0.92981 0.99240 0.99025 0.83449 1.20517 0.87929 0.82358 0.77104 1.90805 1.29977 1.75775 1.37655 1.46943 1.20207 1.11439 1.53806 1.21989 0.92316 0.89818 1.03380 1.20902 0.80339 0.90861 0.75436 1.90807 1.68702 1.29583 1.43980 1.22976 0.95840 0.91889 1.04120 0.83499 1.22873 0.97589 0.89873 0.95617 1.46142 1.40647 1.11948 1.18749 1.22091 1.00857 0.79612 1.04277 0.90569 0.92000 0.94889 0.96888 0.94942 0.92882 0.91698 0.87334 0.90745 0.89236 0.89254 0.86822 0.90225 0.90275 0.88688 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.98 37.15 0.33 -1.98 16 2 C 0.00 -0.05 2.70 -91.77 -0.25 -0.30 16 3 H 0.07 1.31 6.94 -51.93 -0.36 0.95 16 4 C 0.04 0.98 4.43 -27.88 -0.12 0.85 16 5 C -0.52 -13.90 8.41 -34.44 -0.29 -14.19 16 6 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.22 4.24 6.58 -154.01 -1.01 3.23 16 14 N -0.28 -6.02 12.18 32.99 0.40 -5.62 16 15 N -0.31 -5.97 10.98 30.31 0.33 -5.64 16 16 C 0.31 4.79 6.99 -318.89 -2.23 2.56 16 17 N -0.42 -4.55 5.42 -170.28 -0.92 -5.47 16 18 C 0.05 0.43 5.58 -2.25 -0.01 0.42 16 19 C -0.12 -0.79 4.17 -89.66 -0.37 -1.16 16 20 H 0.15 0.52 8.14 -51.93 -0.42 0.09 16 21 C 0.53 4.94 7.08 -11.16 -0.08 4.86 16 22 O -0.47 -5.74 17.47 5.61 0.10 -5.64 16 23 N -0.58 -5.20 2.99 -122.43 -0.37 -5.57 16 24 C 0.07 0.49 10.59 59.85 0.63 1.13 16 25 C 0.54 4.98 7.14 -10.49 -0.07 4.91 16 26 O -0.46 -5.58 17.56 5.60 0.10 -5.48 16 27 C -0.13 -0.86 4.13 -89.66 -0.37 -1.23 16 28 H 0.15 0.56 8.14 -51.93 -0.42 0.14 16 29 C 0.07 0.67 5.64 -2.25 -0.01 0.66 16 30 N -0.48 -7.35 3.21 -121.46 -0.39 -7.74 16 31 C 0.07 0.76 9.90 59.85 0.59 1.36 16 32 H 0.08 1.41 6.95 -51.93 -0.36 1.05 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.06 0.76 7.55 -51.93 -0.39 0.37 16 39 H 0.11 0.77 7.44 -51.93 -0.39 0.39 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.65 7.87 -51.93 -0.41 0.25 16 42 H 0.09 0.67 7.82 -51.93 -0.41 0.26 16 43 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.01 7.02 -51.93 -0.36 0.64 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.90 7.23 -51.93 -0.38 0.52 16 47 H 0.09 0.68 8.06 -51.93 -0.42 0.27 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -36.10 387.25 -9.34 -45.44 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.78 Total: -3.01 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -3.36 Total: 2.66 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.21 Total: -55.76 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.20 Total: -11.13 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.10 -9.34 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339977049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.652 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds