Wall clock time and date at job start Wed Apr 1 2020 04:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.48069 * 2 1 4 4 C 1.53002 * 109.47217 * 239.99763 * 2 1 3 5 5 C 1.50695 * 109.46770 * 65.00495 * 4 2 1 6 6 H 1.07998 * 120.00137 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99788 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00451 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00047 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47052 * 89.99867 * 9 7 5 11 11 H 1.48500 * 109.47274 * 209.99739 * 9 7 5 12 12 H 1.48503 * 109.47279 * 329.99788 * 9 7 5 13 13 C 1.50702 * 109.47144 * 120.00270 * 2 1 3 14 14 N 1.30302 * 126.34511 * 60.01518 * 13 2 1 15 15 N 1.28534 * 110.04959 * 179.97438 * 14 13 2 16 16 C 1.31216 * 109.86207 * 0.02562 * 15 14 13 17 17 N 1.38577 * 126.46995 * 180.02562 * 16 15 14 18 18 C 1.48516 * 111.00104 * 115.37444 * 17 16 15 19 19 C 1.54295 * 104.71145 * 200.72759 * 18 17 16 20 20 H 1.09003 * 113.14966 * 260.56262 * 19 18 17 21 21 C 1.51215 * 109.21104 * 134.18084 * 19 18 17 22 22 O 1.21220 * 125.31261 * 68.81343 * 21 19 18 23 23 N 1.33814 * 109.37490 * 248.77514 * 21 19 18 24 24 C 1.46498 * 122.73301 * 180.02562 * 23 21 19 25 25 C 1.35311 * 114.74422 * 359.71454 * 23 21 19 26 26 O 1.21233 * 126.13448 * 180.35880 * 25 23 21 27 27 C 1.51216 * 108.55589 * 0.45411 * 25 23 21 28 28 H 1.08997 * 112.68243 * 237.06450 * 27 25 23 29 29 C 1.48512 * 111.00103 * 359.96975 * 17 16 15 30 30 N 1.36447 * 107.05417 * 359.97438 * 16 15 14 31 31 C 1.46508 * 127.13445 * 179.97438 * 30 16 15 32 32 H 1.09003 * 109.47029 * 59.99559 * 1 2 3 33 33 H 1.08995 * 109.47612 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46843 * 300.00346 * 1 2 3 35 35 H 1.09000 * 109.47623 * 185.00666 * 4 2 1 36 36 H 1.09006 * 109.46964 * 305.00524 * 4 2 1 37 37 H 0.96993 * 120.00758 * 179.97438 * 8 7 5 38 38 H 1.09000 * 110.38967 * 319.52842 * 18 17 16 39 39 H 1.08996 * 110.39706 * 81.91824 * 18 17 16 40 40 H 1.08998 * 109.47462 * 90.00622 * 24 23 21 41 41 H 1.09003 * 109.46957 * 210.00231 * 24 23 21 42 42 H 1.08997 * 109.47553 * 329.99998 * 24 23 21 43 43 H 1.09003 * 110.38815 * 278.07973 * 29 17 16 44 44 H 1.08996 * 110.39195 * 40.46784 * 29 17 16 45 45 H 1.08995 * 109.46788 * 89.97773 * 31 30 16 46 46 H 1.08999 * 109.46620 * 209.97523 * 31 30 16 47 47 H 1.08997 * 109.47091 * 329.97905 * 31 30 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9742 -2.3756 7 6 1.9924 -0.4023 -3.7282 8 7 2.6746 -1.5199 -3.8512 9 14 1.4977 0.5621 -5.2496 10 1 2.5631 1.5416 -5.5829 11 1 1.3104 -0.3720 -6.3887 12 1 0.2266 1.2835 -4.9869 13 6 2.0323 -0.7105 1.2304 14 7 1.7952 -1.9492 1.5578 15 7 2.3768 -2.2304 2.6690 16 6 3.0209 -1.1774 3.1140 17 7 3.7642 -1.0988 4.2809 18 6 5.1996 -0.8612 3.9827 19 6 5.9450 -1.3208 5.2530 20 1 6.2219 -0.4959 5.9095 21 6 7.1297 -2.1718 4.8543 22 8 8.1226 -1.7690 4.2874 23 7 6.9114 -3.4387 5.2256 24 6 7.8765 -4.5134 4.9812 25 6 5.7305 -3.6499 5.8516 26 8 5.3272 -4.7106 6.2782 27 6 4.9866 -2.3358 5.9319 28 1 4.7321 -2.0586 6.9548 29 6 3.7524 -2.3939 5.0077 30 7 2.8216 -0.1748 2.2102 31 6 3.3440 1.1923 2.2762 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 3.1263 -0.7997 -1.2056 36 1 1.6052 -1.7199 -1.2951 37 1 2.9213 -1.8432 -4.7318 38 1 5.5122 -1.4545 3.1234 39 1 5.3792 0.1981 3.7994 40 1 8.5575 -4.5899 5.8288 41 1 7.3454 -5.4569 4.8555 42 1 8.4446 -4.2930 4.0775 43 1 2.8407 -2.4902 5.5973 44 1 3.8417 -3.2237 4.3066 45 1 4.3132 1.2352 1.7795 46 1 2.6505 1.8706 1.7791 47 1 3.4569 1.4881 3.3192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339977049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:03 Heat of formation + Delta-G solvation = 10.102357 kcal Electronic energy + Delta-G solvation = -31085.447203 eV Core-core repulsion = 26883.498151 eV Total energy + Delta-G solvation = -4201.949052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.14811 -43.32281 -39.90121 -39.60600 -37.15752 -36.92117 -35.92540 -34.50532 -33.74088 -30.83406 -30.21283 -28.97349 -28.55548 -28.03246 -26.03862 -25.70342 -24.47490 -23.72298 -22.39471 -21.94253 -20.90874 -20.56016 -18.68258 -18.63983 -18.20869 -17.75675 -17.59295 -17.47589 -17.13096 -16.52338 -16.34242 -16.15812 -15.68113 -15.58663 -15.19310 -14.97736 -14.74872 -14.49595 -14.43046 -14.16209 -13.89467 -13.84936 -13.64202 -13.53591 -13.14239 -12.97411 -12.93477 -12.81391 -12.76174 -12.56692 -12.37547 -12.24662 -12.01438 -11.90726 -11.68158 -11.37419 -11.22834 -11.21392 -11.12169 -10.98070 -10.79042 -10.54590 -9.52874 -8.16740 -6.28493 0.22777 0.65775 1.09011 1.38205 1.43855 1.45607 1.46666 1.56344 1.75157 2.43393 2.52052 2.63334 2.86756 2.99261 3.17675 3.29181 3.42683 3.68388 3.77370 3.88269 3.89878 4.05617 4.09166 4.13739 4.26680 4.29607 4.30988 4.39185 4.44064 4.48583 4.57535 4.60818 4.63468 4.67529 4.70575 4.76281 4.92824 5.10108 5.14000 5.17633 5.32154 5.43409 5.45293 5.56510 5.69485 5.83144 6.04690 6.05432 6.20094 6.52202 6.87856 7.41078 7.71391 8.95744 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.002555 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.280775 B =10958.012621 C =11519.870537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.009 3.991 3 H 0.101 0.899 4 C 0.050 3.950 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.255 1.255 13 C 0.205 3.795 14 N -0.328 5.328 15 N -0.356 5.356 16 C 0.333 3.667 17 N -0.400 5.400 18 C 0.044 3.956 19 C -0.100 4.100 20 H 0.197 0.803 21 C 0.532 3.468 22 O -0.503 6.503 23 N -0.585 5.585 24 C 0.059 3.941 25 C 0.535 3.465 26 O -0.494 6.494 27 C -0.107 4.107 28 H 0.193 0.807 29 C 0.063 3.937 30 N -0.475 5.475 31 C 0.061 3.939 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.064 0.936 35 H -0.022 1.022 36 H -0.013 1.013 37 H 0.261 0.739 38 H 0.032 0.968 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 7.018 25.007 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.012 4.012 3 H 0.119 0.881 4 C 0.012 3.988 5 C -0.565 4.565 6 H 0.097 0.903 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.179 1.179 13 C -0.064 4.064 14 N -0.166 5.166 15 N -0.200 5.200 16 C -0.025 4.025 17 N -0.124 5.124 18 C -0.083 4.083 19 C -0.121 4.121 20 H 0.214 0.786 21 C 0.321 3.679 22 O -0.376 6.376 23 N -0.329 5.329 24 C -0.081 4.081 25 C 0.325 3.675 26 O -0.365 6.365 27 C -0.128 4.128 28 H 0.210 0.790 29 C -0.065 4.065 30 N -0.169 5.169 31 C -0.080 4.080 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.083 0.917 35 H -0.004 1.004 36 H 0.006 0.994 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.156 0.844 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.141 0.859 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.125 0.875 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.967 5.555 25.058 26.874 hybrid contribution 0.919 -0.021 -1.805 2.026 sum 8.886 5.534 23.253 25.500 Atomic orbital electron populations 1.21595 0.92341 1.01585 1.02150 1.19771 0.97225 0.98037 0.86184 0.88126 1.18846 0.93583 0.94810 0.91536 1.21587 1.34886 1.08900 0.91080 0.90312 1.26025 0.95108 0.95937 1.02992 1.70152 1.40289 1.23117 1.24339 0.85426 0.79341 0.78148 0.78013 1.19707 1.21714 1.17883 1.25378 0.95482 0.91732 0.93840 1.73928 1.21967 1.12916 1.07831 1.74432 1.15653 1.22585 1.07305 1.22821 1.02487 0.85807 0.91405 1.62393 1.07771 1.31495 1.10727 1.23257 0.84192 1.05338 0.95517 1.23004 0.90906 0.99931 0.98226 0.78576 1.20968 0.88195 0.82531 0.76195 1.90795 1.31515 1.76253 1.39051 1.47117 1.20455 1.11872 1.53426 1.22100 0.92457 0.89480 1.04100 1.21324 0.80304 0.91328 0.74532 1.90796 1.69328 1.31002 1.45401 1.23052 0.93736 0.90314 1.05688 0.78999 1.22917 0.99770 0.88332 0.95476 1.46300 1.39535 1.13586 1.17443 1.22579 1.01407 0.76937 1.07036 0.90703 0.94308 0.91667 1.00394 0.99420 0.93037 0.94923 0.84367 0.88852 0.89576 0.89652 0.85855 0.93621 0.89262 0.87494 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.98 71.98 0.65 -3.65 16 2 C 0.01 0.34 2.70 -11.54 -0.03 0.31 16 3 H 0.10 3.39 6.94 -2.39 -0.02 3.37 16 4 C 0.05 2.65 4.43 29.85 0.13 2.79 16 5 C -0.53 -28.33 8.41 25.60 0.22 -28.11 16 6 H 0.08 3.85 7.06 -2.91 -0.02 3.82 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.91 13.29 21.45 0.28 -57.63 16 9 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 C 0.20 7.95 6.58 137.64 0.91 8.86 16 14 N -0.33 -14.73 12.18 -49.53 -0.60 -15.33 16 15 N -0.36 -14.08 10.98 -58.01 -0.64 -14.71 16 16 C 0.33 9.99 6.99 260.12 1.82 11.81 16 17 N -0.40 -7.75 5.42 -692.65 -3.75 -11.50 16 18 C 0.04 0.68 5.58 86.43 0.48 1.16 16 19 C -0.10 -0.94 4.17 -10.17 -0.04 -0.98 16 20 H 0.20 0.09 8.14 -2.39 -0.02 0.07 16 21 C 0.53 8.96 7.08 87.97 0.62 9.58 16 22 O -0.50 -11.73 17.47 -2.85 -0.05 -11.78 16 23 N -0.59 -10.03 2.99 -778.32 -2.32 -12.36 16 24 C 0.06 0.89 10.59 127.77 1.35 2.25 16 25 C 0.54 9.32 7.14 87.74 0.63 9.95 16 26 O -0.49 -11.82 17.56 -2.89 -0.05 -11.87 16 27 C -0.11 -1.11 4.13 -10.17 -0.04 -1.16 16 28 H 0.19 0.40 8.14 -2.39 -0.02 0.38 16 29 C 0.06 1.15 5.64 86.43 0.49 1.64 16 30 N -0.48 -13.94 3.21 -538.18 -1.73 -15.66 16 31 C 0.06 1.04 9.90 127.77 1.27 2.30 16 32 H 0.07 2.69 6.95 -2.39 -0.02 2.68 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 36 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.03 0.74 7.55 -2.39 -0.02 0.72 16 39 H 0.14 1.35 7.44 -2.39 -0.02 1.33 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.33 7.87 -2.39 -0.02 1.31 16 42 H 0.08 1.34 7.82 -2.39 -0.02 1.32 16 43 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.19 7.02 -2.39 -0.02 1.17 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.11 1.61 7.23 -2.39 -0.02 1.59 16 47 H 0.13 1.26 8.06 -2.39 -0.02 1.24 16 Total: -1.00 -85.75 387.25 3.06 -82.69 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.00 Total: 6.05 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 8.90 Total: 17.02 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -8.76 Total: -127.19 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.10 Total: -23.65 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -85.75 3.06 -82.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339977049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.790 kcal (2) G-P(sol) polarization free energy of solvation -85.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds