Wall clock time and date at job start Wed Apr 1 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46850 * 2 1 4 4 C 1.52993 * 109.47088 * 120.00120 * 2 1 3 5 5 N 1.46497 * 109.46977 * 175.00196 * 4 2 1 6 6 C 1.34783 * 120.00306 * 180.02562 * 5 4 2 7 7 O 1.21557 * 119.99523 * 359.97438 * 6 5 4 8 8 C 1.47824 * 120.00457 * 180.02562 * 6 5 4 9 9 C 1.39966 * 120.93742 * 3.70527 * 8 6 5 10 10 N 1.32136 * 118.92531 * 179.97438 * 9 8 6 11 11 C 1.31884 * 120.96416 * 0.02562 * 10 9 8 12 12 N 1.31862 * 122.09445 * 359.74184 * 11 10 9 13 13 C 1.32160 * 120.96730 * 0.52743 * 12 11 10 14 14 C 1.50702 * 120.53444 * 179.76793 * 13 12 11 15 15 C 1.52996 * 117.49905 * 357.84014 * 14 13 12 16 16 C 1.52995 * 117.49509 * 289.21541 * 14 13 12 17 17 N 1.46900 * 109.46924 * 240.00210 * 2 1 3 18 18 C 1.46898 * 110.99973 * 84.99890 * 17 2 1 19 19 C 1.50704 * 109.46893 * 180.02562 * 18 17 2 20 20 O 1.21293 * 120.00262 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00013 * 180.02562 * 19 18 17 22 22 C 1.37092 * 119.99985 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00047 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99992 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00087 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99852 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46792 * 90.00630 * 26 24 22 28 28 H 1.48500 * 109.47187 * 210.00054 * 26 24 22 29 29 H 1.48503 * 109.47509 * 330.00690 * 26 24 22 30 30 H 1.09001 * 109.47342 * 60.00082 * 1 2 3 31 31 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47187 * 299.99946 * 1 2 3 33 33 H 1.09002 * 109.47496 * 54.99713 * 4 2 1 34 34 H 1.09007 * 109.47092 * 295.00018 * 4 2 1 35 35 H 0.97003 * 120.00332 * 359.97438 * 5 4 2 36 36 H 1.08000 * 120.53806 * 359.96122 * 9 8 6 37 37 H 1.08002 * 118.95231 * 179.97438 * 11 10 9 38 38 H 1.09000 * 115.54660 * 143.55220 * 14 13 12 39 39 H 1.08998 * 117.50250 * 0.02562 * 15 14 13 40 40 H 1.09003 * 117.49492 * 145.02741 * 15 14 13 41 41 H 1.09008 * 117.49895 * 214.98372 * 16 14 13 42 42 H 1.08995 * 117.50209 * 359.97438 * 16 14 13 43 43 H 1.00898 * 111.00141 * 321.04288 * 17 2 1 44 44 H 1.08997 * 109.47421 * 299.99301 * 18 17 2 45 45 H 1.08997 * 109.47092 * 59.99793 * 18 17 2 46 46 H 0.97004 * 119.99561 * 359.97438 * 21 19 18 47 47 H 0.97003 * 120.00033 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1731 -1.4291 2.1906 7 8 3.5686 -1.8852 3.1415 8 6 5.6464 -1.5347 2.1317 9 6 6.3686 -0.9487 1.0857 10 7 7.6845 -1.0671 1.0727 11 6 8.3160 -1.7254 2.0251 12 7 7.6754 -2.2886 3.0307 13 6 6.3584 -2.2238 3.1197 14 6 5.6358 -2.8754 4.2705 15 6 6.4785 -3.6473 5.2877 16 6 5.5884 -4.4043 4.3000 17 7 2.0197 -0.6925 -1.1995 18 6 2.0824 0.2227 -2.3469 19 6 2.5872 -0.5218 -3.5561 20 8 2.8677 -1.6987 -3.4703 21 7 2.7281 0.1205 -4.7326 22 6 3.1879 -0.5566 -5.8324 23 1 3.4367 -1.6047 -5.7562 24 6 3.3336 0.1057 -7.0452 25 7 3.7738 -0.5434 -8.0996 26 14 2.9025 1.9185 -7.1771 27 1 4.1032 2.7364 -6.8698 28 1 2.4392 2.2181 -8.5558 29 1 1.8224 2.2421 -6.2106 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1583 2.1370 35 1 3.9824 -0.4627 0.4315 36 1 5.8584 -0.4086 0.3018 37 1 9.3924 -1.8025 1.9821 38 1 4.7640 -2.3376 4.6432 39 1 7.5557 -3.6835 5.1249 40 1 6.1613 -3.6174 6.3302 41 1 4.6857 -4.8725 4.6926 42 1 6.0795 -4.9389 3.4869 43 1 1.4496 -1.4979 -1.4101 44 1 1.0870 0.6163 -2.5526 45 1 2.7588 1.0462 -2.1182 46 1 2.5042 1.0619 -4.8010 47 1 3.8759 -0.0809 -8.9461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491656082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:33 Heat of formation + Delta-G solvation = 13.536193 kcal Electronic energy + Delta-G solvation = -29776.385943 eV Core-core repulsion = 25574.585793 eV Total energy + Delta-G solvation = -4201.800150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.59114 -39.56232 -38.64994 -37.52170 -37.01178 -34.39718 -33.97158 -33.54965 -32.47612 -31.73962 -30.83743 -27.08263 -26.56315 -25.52684 -24.91593 -23.77586 -22.50823 -21.62352 -21.13128 -20.90933 -19.48382 -18.50454 -18.06543 -17.87228 -17.22512 -16.22518 -16.09983 -15.77493 -15.52658 -15.35215 -15.04833 -14.93296 -14.65790 -14.35924 -14.28196 -13.95795 -13.66323 -13.32297 -13.11430 -12.82424 -12.68210 -12.46549 -12.29093 -12.19282 -11.89472 -11.85406 -11.72861 -11.65592 -11.54055 -11.22278 -11.15404 -10.79326 -10.64978 -10.49949 -10.02911 -9.78190 -9.71983 -9.63207 -9.54420 -9.14119 -8.71120 -8.32014 -8.23445 -6.36210 -3.88061 0.18033 0.72444 2.66128 2.93546 2.97035 3.02079 3.10910 3.39754 3.63485 3.65940 3.76178 3.80186 3.92559 4.05241 4.08250 4.44613 4.57698 4.59787 4.74385 4.80187 4.83582 4.85619 4.90311 5.04308 5.07886 5.16209 5.34175 5.43832 5.47582 5.49265 5.50691 5.57327 5.66521 5.68110 5.78419 5.83618 5.91018 5.94061 5.97242 6.06179 6.31027 6.62972 6.91433 7.34752 7.40056 7.51964 7.73494 8.01978 8.08619 8.53386 8.89419 9.36437 9.75634 10.76778 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.002404 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.851155 B =11643.519244 C =13084.552216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.135 3.865 5 N -0.704 5.704 6 C 0.569 3.431 7 O -0.533 6.533 8 C -0.238 4.238 9 C 0.191 3.809 10 N -0.524 5.524 11 C 0.318 3.682 12 N -0.525 5.525 13 C 0.263 3.737 14 C -0.122 4.122 15 C -0.164 4.164 16 C -0.150 4.150 17 N -0.665 5.665 18 C 0.046 3.954 19 C 0.447 3.553 20 O -0.564 6.564 21 N -0.589 5.589 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.879 5.879 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.408 0.592 36 H 0.174 0.826 37 H 0.202 0.798 38 H 0.152 0.848 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.356 0.644 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 3.253 23.955 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.011 3.989 5 N -0.356 5.356 6 C 0.355 3.645 7 O -0.412 6.412 8 C -0.246 4.246 9 C 0.024 3.976 10 N -0.237 5.237 11 C 0.031 3.969 12 N -0.239 5.239 13 C 0.117 3.883 14 C -0.141 4.141 15 C -0.201 4.201 16 C -0.188 4.188 17 N -0.298 5.298 18 C -0.086 4.086 19 C 0.233 3.767 20 O -0.446 6.446 21 N -0.228 5.228 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.519 5.519 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.191 0.809 37 H 0.218 0.782 38 H 0.169 0.831 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.176 0.824 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.631 2.150 24.537 24.685 hybrid contribution -1.872 1.909 -1.236 2.945 sum -0.241 4.059 23.301 23.653 Atomic orbital electron populations 1.22432 0.96011 1.02899 1.02689 1.21875 0.93584 0.98322 0.90643 0.89674 1.21380 0.79393 1.01301 0.96833 1.45696 1.08088 1.58798 1.22976 1.17685 0.85784 0.78241 0.82810 1.90696 1.69301 1.48092 1.33087 1.21545 0.96269 1.06703 1.00069 1.23575 0.89852 0.90331 0.93817 1.68479 1.09958 1.18044 1.27236 1.25243 1.01472 0.86336 0.83850 1.68269 1.08980 1.21290 1.25331 1.20988 0.88656 0.87265 0.91410 1.21385 1.01749 0.95088 0.95877 1.23015 0.98920 1.02842 0.95315 1.22890 1.02258 0.91427 1.02189 1.60183 1.57893 1.09236 1.02493 1.21763 1.00187 0.95728 0.90969 1.19688 0.84992 0.88278 0.83785 1.90583 1.53851 1.15955 1.84231 1.42209 1.59935 1.11102 1.09573 1.19420 1.40261 0.97997 0.85798 0.86284 1.25052 0.97426 0.98425 0.95249 1.69619 1.44878 1.36555 1.00868 0.86670 0.78979 0.85126 0.78568 1.19554 1.20172 1.19573 0.91913 0.91823 0.91740 0.91102 0.90985 0.75535 0.80873 0.78175 0.83103 0.87532 0.88420 0.87910 0.88978 0.82351 0.93506 0.89470 0.79715 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.16 37.16 0.34 -1.08 16 2 C 0.07 0.60 2.75 -67.71 -0.19 0.41 16 3 H 0.09 0.69 7.80 -51.93 -0.40 0.28 16 4 C 0.14 1.29 5.37 -4.05 -0.02 1.27 16 5 N -0.70 -7.42 5.35 -61.26 -0.33 -7.75 16 6 C 0.57 6.93 7.76 -12.34 -0.10 6.84 16 7 O -0.53 -7.44 13.50 5.32 0.07 -7.37 16 8 C -0.24 -2.82 5.91 -104.70 -0.62 -3.44 16 9 C 0.19 2.14 10.81 -16.77 -0.18 1.96 16 10 N -0.52 -6.17 10.42 -14.24 -0.15 -6.32 16 11 C 0.32 3.30 12.27 -92.02 -1.13 2.17 16 12 N -0.52 -5.98 9.45 -10.48 -0.10 -6.08 16 13 C 0.26 3.16 6.53 -81.82 -0.53 2.62 16 14 C -0.12 -1.35 4.84 -91.78 -0.44 -1.79 16 15 C -0.16 -1.47 10.04 -26.73 -0.27 -1.74 16 16 C -0.15 -1.46 10.23 -26.73 -0.27 -1.74 16 17 N -0.67 -8.39 5.31 -107.99 -0.57 -8.96 16 18 C 0.05 0.65 5.97 -4.98 -0.03 0.62 16 19 C 0.45 9.38 7.82 -10.98 -0.09 9.29 16 20 O -0.56 -14.31 15.78 5.55 0.09 -14.22 16 21 N -0.59 -13.30 5.09 -10.96 -0.06 -13.35 16 22 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 23 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.27 13.96 55.50 0.77 -24.49 16 26 Si 0.88 18.79 27.74 -169.99 -4.71 14.07 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 29 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 30 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.41 4.09 6.29 -40.82 -0.26 3.84 16 36 H 0.17 1.60 6.55 -52.49 -0.34 1.26 16 37 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.15 1.79 6.00 -51.93 -0.31 1.47 16 39 H 0.11 0.99 7.58 -51.93 -0.39 0.60 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.36 4.98 8.17 -39.29 -0.32 4.66 16 44 H 0.05 0.58 7.44 -51.93 -0.39 0.20 16 45 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 46 H 0.37 7.29 5.76 -40.82 -0.24 7.05 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -33.82 394.27 -9.22 -43.04 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -6.40 Total: 17.63 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -3.78 Total: 7.87 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -0.43 Total: -66.96 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.16 Total: -21.59 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.07 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.82 -9.22 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491656082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.576 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds