Wall clock time and date at job start Wed Apr 1 2020 05:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46850 * 2 1 4 4 C 1.52993 * 109.47088 * 120.00120 * 2 1 3 5 5 N 1.46497 * 109.46977 * 175.00196 * 4 2 1 6 6 C 1.34783 * 120.00306 * 180.02562 * 5 4 2 7 7 O 1.21557 * 119.99523 * 359.97438 * 6 5 4 8 8 C 1.47824 * 120.00457 * 180.02562 * 6 5 4 9 9 C 1.39966 * 120.93742 * 3.70527 * 8 6 5 10 10 N 1.32136 * 118.92531 * 179.97438 * 9 8 6 11 11 C 1.31884 * 120.96416 * 0.02562 * 10 9 8 12 12 N 1.31862 * 122.09445 * 359.74184 * 11 10 9 13 13 C 1.32160 * 120.96730 * 0.52743 * 12 11 10 14 14 C 1.50702 * 120.53444 * 179.76793 * 13 12 11 15 15 C 1.52996 * 117.49905 * 357.84014 * 14 13 12 16 16 C 1.52995 * 117.49509 * 289.21541 * 14 13 12 17 17 N 1.46900 * 109.46924 * 240.00210 * 2 1 3 18 18 C 1.46898 * 110.99973 * 84.99890 * 17 2 1 19 19 C 1.50704 * 109.46893 * 180.02562 * 18 17 2 20 20 O 1.21293 * 120.00262 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00013 * 180.02562 * 19 18 17 22 22 C 1.37092 * 119.99985 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00047 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99992 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00087 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99852 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46792 * 90.00630 * 26 24 22 28 28 H 1.48500 * 109.47187 * 210.00054 * 26 24 22 29 29 H 1.48503 * 109.47509 * 330.00690 * 26 24 22 30 30 H 1.09001 * 109.47342 * 60.00082 * 1 2 3 31 31 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47187 * 299.99946 * 1 2 3 33 33 H 1.09002 * 109.47496 * 54.99713 * 4 2 1 34 34 H 1.09007 * 109.47092 * 295.00018 * 4 2 1 35 35 H 0.97003 * 120.00332 * 359.97438 * 5 4 2 36 36 H 1.08000 * 120.53806 * 359.96122 * 9 8 6 37 37 H 1.08002 * 118.95231 * 179.97438 * 11 10 9 38 38 H 1.09000 * 115.54660 * 143.55220 * 14 13 12 39 39 H 1.08998 * 117.50250 * 0.02562 * 15 14 13 40 40 H 1.09003 * 117.49492 * 145.02741 * 15 14 13 41 41 H 1.09008 * 117.49895 * 214.98372 * 16 14 13 42 42 H 1.08995 * 117.50209 * 359.97438 * 16 14 13 43 43 H 1.00898 * 111.00141 * 321.04288 * 17 2 1 44 44 H 1.08997 * 109.47421 * 299.99301 * 18 17 2 45 45 H 1.08997 * 109.47092 * 59.99793 * 18 17 2 46 46 H 0.97004 * 119.99561 * 359.97438 * 21 19 18 47 47 H 0.97003 * 120.00033 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1731 -1.4291 2.1906 7 8 3.5686 -1.8852 3.1415 8 6 5.6464 -1.5347 2.1317 9 6 6.3686 -0.9487 1.0857 10 7 7.6845 -1.0671 1.0727 11 6 8.3160 -1.7254 2.0251 12 7 7.6754 -2.2886 3.0307 13 6 6.3584 -2.2238 3.1197 14 6 5.6358 -2.8754 4.2705 15 6 6.4785 -3.6473 5.2877 16 6 5.5884 -4.4043 4.3000 17 7 2.0197 -0.6925 -1.1995 18 6 2.0824 0.2227 -2.3469 19 6 2.5872 -0.5218 -3.5561 20 8 2.8677 -1.6987 -3.4703 21 7 2.7281 0.1205 -4.7326 22 6 3.1879 -0.5566 -5.8324 23 1 3.4367 -1.6047 -5.7562 24 6 3.3336 0.1057 -7.0452 25 7 3.7738 -0.5434 -8.0996 26 14 2.9025 1.9185 -7.1771 27 1 4.1032 2.7364 -6.8698 28 1 2.4392 2.2181 -8.5558 29 1 1.8224 2.2421 -6.2106 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1583 2.1370 35 1 3.9824 -0.4627 0.4315 36 1 5.8584 -0.4086 0.3018 37 1 9.3924 -1.8025 1.9821 38 1 4.7640 -2.3376 4.6432 39 1 7.5557 -3.6835 5.1249 40 1 6.1613 -3.6174 6.3302 41 1 4.6857 -4.8725 4.6926 42 1 6.0795 -4.9389 3.4869 43 1 1.4496 -1.4979 -1.4101 44 1 1.0870 0.6163 -2.5526 45 1 2.7588 1.0462 -2.1182 46 1 2.5042 1.0619 -4.8010 47 1 3.8759 -0.0809 -8.9461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491656082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:32 Heat of formation + Delta-G solvation = -12.398397 kcal Electronic energy + Delta-G solvation = -29777.510551 eV Core-core repulsion = 25574.585793 eV Total energy + Delta-G solvation = -4202.924758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.44591 -40.53799 -40.18843 -38.39101 -37.98150 -35.99857 -35.21107 -34.43260 -33.73530 -33.34514 -31.79987 -28.07009 -27.82431 -26.37269 -25.85865 -25.28820 -23.25743 -22.45526 -21.91549 -21.79454 -21.26290 -20.29313 -18.91947 -18.82590 -18.07870 -17.62998 -17.11450 -16.76637 -16.67049 -16.45242 -16.30846 -16.01729 -15.71856 -15.38654 -15.17154 -15.07329 -14.85743 -14.60779 -14.46877 -14.15114 -13.77847 -13.52668 -13.35353 -13.13794 -13.07331 -12.78397 -12.76354 -12.52024 -12.48624 -12.39388 -12.34694 -11.97473 -11.86466 -11.59459 -11.48925 -11.33812 -10.68653 -10.59121 -10.41613 -10.40252 -10.22631 -9.99732 -9.33945 -8.39627 -6.00400 -0.67753 -0.15056 1.30980 1.37356 1.45818 1.75263 1.99874 2.08543 2.24530 2.56502 2.73503 2.81689 2.94944 3.03022 3.17320 3.26962 3.41491 3.60116 3.76745 3.86338 3.99257 4.04936 4.10750 4.11364 4.23610 4.31527 4.36169 4.49247 4.60456 4.65110 4.69734 4.74474 4.81181 4.91967 4.93635 5.02968 5.11200 5.19972 5.28110 5.31126 5.47219 5.54615 5.77124 5.92666 6.06064 6.35580 6.47662 6.61699 6.88715 6.91058 7.12689 7.43004 8.00390 8.78135 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.002404 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.851155 B =11643.519244 C =13084.552216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.107 0.893 4 C 0.135 3.865 5 N -0.698 5.698 6 C 0.568 3.432 7 O -0.556 6.556 8 C -0.251 4.251 9 C 0.190 3.810 10 N -0.542 5.542 11 C 0.316 3.684 12 N -0.532 5.532 13 C 0.252 3.748 14 C -0.138 4.138 15 C -0.146 4.146 16 C -0.151 4.151 17 N -0.679 5.679 18 C 0.062 3.938 19 C 0.448 3.552 20 O -0.615 6.615 21 N -0.592 5.592 22 C -0.326 4.326 23 H 0.053 0.947 24 C -0.018 4.018 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.257 1.257 28 H -0.279 1.279 29 H -0.228 1.228 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.189 0.811 37 H 0.234 0.766 38 H 0.142 0.858 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.346 0.654 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.390 0.610 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 6.556 25.673 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.034 4.034 3 H 0.125 0.875 4 C 0.011 3.989 5 N -0.348 5.348 6 C 0.353 3.647 7 O -0.436 6.436 8 C -0.259 4.259 9 C 0.023 3.977 10 N -0.255 5.255 11 C 0.030 3.970 12 N -0.246 5.246 13 C 0.106 3.894 14 C -0.156 4.156 15 C -0.183 4.183 16 C -0.189 4.189 17 N -0.312 5.312 18 C -0.070 4.070 19 C 0.236 3.764 20 O -0.499 6.499 21 N -0.234 5.234 22 C -0.455 4.455 23 H 0.071 0.929 24 C -0.216 4.216 25 N -0.578 5.578 26 Si 0.785 3.215 27 H -0.182 1.182 28 H -0.204 1.204 29 H -0.151 1.151 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.248 0.752 36 H 0.206 0.794 37 H 0.250 0.750 38 H 0.159 0.841 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.165 0.835 44 H 0.096 0.904 45 H 0.140 0.860 46 H 0.225 0.775 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.640 5.475 26.285 26.857 hybrid contribution -1.527 0.716 -1.703 2.397 sum -0.888 6.191 24.582 25.365 Atomic orbital electron populations 1.22388 0.94764 1.02788 1.03681 1.21901 0.94450 0.98697 0.88335 0.87457 1.21462 0.78623 1.00914 0.97857 1.45700 1.08559 1.58075 1.22511 1.17773 0.85951 0.78126 0.82824 1.90682 1.69726 1.49189 1.34002 1.21582 0.96234 1.07489 1.00554 1.23838 0.89920 0.90038 0.93879 1.68541 1.10217 1.18867 1.27915 1.25925 1.02820 0.85188 0.83046 1.68333 1.08739 1.21711 1.25809 1.21244 0.89128 0.87301 0.91758 1.21355 1.02136 0.95524 0.96632 1.23069 0.98504 1.00870 0.95876 1.22928 1.02925 0.90667 1.02398 1.60163 1.58704 1.09222 1.03099 1.21696 1.02093 0.95379 0.87857 1.21089 0.82362 0.87948 0.84994 1.90567 1.55268 1.18792 1.85286 1.42038 1.60637 1.11865 1.08836 1.18976 1.42151 0.95986 0.88428 0.92858 1.26143 0.96516 1.05045 0.93920 1.69813 1.46517 1.39588 1.01848 0.85359 0.80255 0.76501 0.79344 1.18156 1.20418 1.15117 0.91677 0.92592 0.89910 0.92572 0.89586 0.75169 0.79383 0.75022 0.84094 0.87754 0.86496 0.86983 0.89814 0.83531 0.90424 0.86049 0.77460 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.16 71.98 0.66 -1.53 16 2 C 0.08 1.12 2.75 44.91 0.12 1.24 16 3 H 0.11 1.19 7.80 -2.39 -0.02 1.17 16 4 C 0.14 2.33 5.37 86.38 0.46 2.79 16 5 N -0.70 -13.84 5.35 -465.99 -2.49 -16.33 16 6 C 0.57 13.65 7.76 86.78 0.67 14.32 16 7 O -0.56 -15.52 13.50 -3.89 -0.05 -15.58 16 8 C -0.25 -5.92 5.91 -19.91 -0.12 -6.04 16 9 C 0.19 4.16 10.81 85.07 0.92 5.08 16 10 N -0.54 -12.38 10.42 -198.97 -2.07 -14.45 16 11 C 0.32 6.28 12.27 180.84 2.22 8.50 16 12 N -0.53 -11.86 9.45 -187.06 -1.77 -13.63 16 13 C 0.25 6.04 6.53 42.92 0.28 6.32 16 14 C -0.14 -3.02 4.84 -11.54 -0.06 -3.08 16 15 C -0.15 -2.49 10.04 30.59 0.31 -2.18 16 16 C -0.15 -2.92 10.23 30.59 0.31 -2.61 16 17 N -0.68 -15.63 5.31 -495.58 -2.63 -18.27 16 18 C 0.06 1.53 5.97 85.56 0.51 2.04 16 19 C 0.45 18.45 7.82 87.66 0.69 19.13 16 20 O -0.61 -32.12 15.78 -3.07 -0.05 -32.17 16 21 N -0.59 -26.19 5.09 -306.98 -1.56 -27.76 16 22 C -0.33 -18.56 10.16 84.04 0.85 -17.70 16 23 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 24 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16 25 N -0.94 -55.93 13.96 21.66 0.30 -55.62 16 26 Si 0.97 37.47 27.74 68.60 1.90 39.37 16 27 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 28 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 29 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 30 H 0.06 0.81 7.45 -2.39 -0.02 0.79 16 31 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.41 7.58 6.29 -92.71 -0.58 7.00 16 36 H 0.19 3.30 6.55 -2.91 -0.02 3.28 16 37 H 0.23 2.75 8.06 -2.91 -0.02 2.72 16 38 H 0.14 3.38 6.00 -2.39 -0.01 3.37 16 39 H 0.10 1.84 7.58 -2.39 -0.02 1.82 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.35 9.32 8.17 -89.70 -0.73 8.59 16 44 H 0.08 1.53 7.44 -2.39 -0.02 1.51 16 45 H 0.12 2.27 8.05 -2.39 -0.02 2.25 16 46 H 0.39 14.02 5.76 -92.71 -0.53 13.49 16 47 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -80.12 394.27 -0.99 -81.11 By element: Atomic # 1 Polarization: 48.40 SS G_CDS: -0.86 Total: 47.54 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 8.30 Total: 25.77 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -10.23 Total: -146.06 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.10 Total: -47.74 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 1.90 Total: 39.37 kcal Total: -80.12 -0.99 -81.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491656082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.710 kcal (2) G-P(sol) polarization free energy of solvation -80.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds