Wall clock time and date at job start Wed Apr 1 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.47423 * 125.64829 * 359.41380 * 6 4 2 8 8 C 1.54694 * 104.93833 * 204.07725 * 7 6 4 9 9 C 1.55155 * 101.67910 * 323.27800 * 8 7 6 10 10 C 1.47019 * 125.64379 * 179.72980 * 6 4 2 11 11 H 1.08995 * 109.89159 * 59.48125 * 10 6 4 12 12 C 1.53009 * 109.88116 * 298.46889 * 10 6 4 13 13 N 1.46896 * 109.46953 * 55.00263 * 12 10 6 14 14 C 1.46901 * 110.99880 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.46830 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99967 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99496 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00058 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99582 * 0.02562 * 18 17 15 20 20 C 1.38941 * 120.00459 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00230 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00324 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46974 * 89.99947 * 22 20 18 24 24 H 1.48503 * 109.47294 * 209.99887 * 22 20 18 25 25 H 1.48504 * 109.47109 * 329.99953 * 22 20 18 26 26 C 1.53004 * 109.46876 * 240.00486 * 2 1 3 27 27 C 1.52998 * 109.47023 * 65.00137 * 26 2 1 28 28 F 1.39893 * 109.46743 * 185.00248 * 26 2 1 29 29 F 1.39901 * 109.46794 * 305.00014 * 26 2 1 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 32 32 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08994 * 110.36752 * 323.00437 * 7 6 4 34 34 H 1.08990 * 110.36419 * 85.33253 * 7 6 4 35 35 H 1.08998 * 111.10156 * 205.10857 * 8 7 6 36 36 H 1.08998 * 110.81635 * 81.32285 * 8 7 6 37 37 H 1.09001 * 110.72197 * 276.97849 * 9 8 7 38 38 H 1.08998 * 110.87633 * 153.77304 * 9 8 7 39 39 H 1.08996 * 109.46791 * 175.00417 * 12 10 6 40 40 H 1.09000 * 109.46927 * 295.00558 * 12 10 6 41 41 H 1.00903 * 110.99716 * 56.04553 * 13 12 10 42 42 H 1.08998 * 109.47123 * 299.99966 * 14 13 12 43 43 H 1.08990 * 109.46993 * 60.00344 * 14 13 12 44 44 H 0.97004 * 120.00501 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00349 * 180.02562 * 21 20 18 46 46 H 1.08991 * 109.47437 * 59.99960 * 27 26 2 47 47 H 1.09004 * 109.46778 * 180.02562 * 27 26 2 48 48 H 1.09005 * 109.47209 * 299.99293 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 0.8711 0.9319 2.7337 8 6 1.2863 1.3846 4.1534 9 6 1.5266 0.0239 4.8592 10 6 2.1164 -0.8504 3.7325 11 1 3.2041 -0.8603 3.8019 12 6 1.5754 -2.2776 3.8398 13 7 2.0066 -3.0539 2.6696 14 6 1.5050 -4.4329 2.7387 15 6 1.9670 -5.1969 1.5245 16 8 2.6468 -4.6466 0.6842 17 7 1.6239 -6.4913 1.3721 18 6 2.0437 -7.1862 0.2674 19 1 2.6497 -6.6964 -0.4805 20 6 1.6896 -8.5205 0.1100 21 7 0.9518 -9.1163 1.0197 22 14 2.2622 -9.4675 -1.3949 23 1 3.5719 -10.1066 -1.1089 24 1 1.2636 -10.5141 -1.7308 25 1 2.4065 -8.5348 -2.5415 26 6 2.0399 -0.7212 -1.2494 27 6 1.6352 0.0691 -2.4953 28 9 3.4341 -0.8216 -1.1933 29 9 1.4820 -2.0028 -1.3083 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.0773 1.7191 2.0086 34 1 -0.1859 0.6666 2.7166 35 1 0.4837 1.9400 4.6386 36 1 2.2023 1.9743 4.1195 37 1 0.5871 -0.3945 5.2203 38 1 2.2390 0.1311 5.6772 39 1 1.9591 -2.7444 4.7469 40 1 0.4864 -2.2515 3.8772 41 1 3.0112 -3.0391 2.5760 42 1 1.8886 -4.9144 3.6382 43 1 0.4156 -4.4221 2.7687 44 1 1.0800 -6.9313 2.0440 45 1 0.7049 -10.0479 0.9100 46 1 2.0698 1.0676 -2.4494 47 1 1.9981 -0.4449 -3.3854 48 1 0.5488 0.1473 -2.5390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569555607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:02 Heat of formation + Delta-G solvation = -142.533478 kcal Electronic energy + Delta-G solvation = -33308.189424 eV Core-core repulsion = 28648.932399 eV Total energy + Delta-G solvation = -4659.257025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.43192 -46.40226 -40.20357 -37.93370 -37.33344 -35.23066 -34.36005 -33.53330 -31.59653 -30.99648 -30.28752 -29.42668 -26.73016 -25.59038 -24.56440 -23.45568 -22.50607 -21.56118 -20.64928 -19.11951 -18.72509 -17.67780 -17.40214 -16.94878 -16.70710 -16.19443 -15.90827 -15.45842 -15.17299 -14.81504 -14.35199 -14.12628 -13.95471 -13.79384 -13.57641 -13.52425 -13.28571 -13.15501 -13.09070 -12.91328 -12.70066 -12.62886 -12.36149 -12.28209 -12.02901 -11.94629 -11.67872 -11.56124 -11.48214 -11.43051 -11.39326 -11.20054 -11.02324 -10.93533 -10.85132 -10.53314 -10.25154 -10.02079 -9.27999 -9.12486 -8.49777 -8.02733 -7.72170 -7.48466 -6.21915 -3.60826 2.94873 3.16209 3.30687 3.37176 3.45126 3.88374 4.14205 4.19298 4.21954 4.30640 4.35099 4.49945 4.52326 4.65282 4.76071 4.95953 4.98731 5.01482 5.08894 5.21378 5.29073 5.37186 5.41300 5.43256 5.45891 5.48611 5.53406 5.60687 5.61895 5.65034 5.68976 5.77078 5.80968 5.86119 6.01554 6.08018 6.13906 6.23525 6.46746 6.55228 7.55634 7.74448 7.75732 8.10354 8.29786 8.69485 8.86783 9.41302 9.79548 10.34792 10.96884 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011682 B = 0.003660 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.303677 B = 7648.356699 C = 9449.371214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 H 0.110 0.890 4 C 0.519 3.481 5 O -0.434 6.434 6 N -0.615 5.615 7 C 0.100 3.900 8 C -0.133 4.133 9 C -0.126 4.126 10 C 0.144 3.856 11 H 0.070 0.930 12 C 0.047 3.953 13 N -0.639 5.639 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.554 6.554 17 N -0.576 5.576 18 C -0.288 4.288 19 H 0.101 0.899 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.927 3.073 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.270 1.270 26 C 0.309 3.691 27 C -0.196 4.196 28 F -0.193 7.193 29 F -0.177 7.177 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.359 0.641 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.389 0.611 45 H 0.268 0.732 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 25.857 5.767 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 H 0.128 0.872 4 C 0.304 3.696 5 O -0.300 6.300 6 N -0.354 5.354 7 C -0.024 4.024 8 C -0.171 4.171 9 C -0.164 4.164 10 C 0.040 3.960 11 H 0.088 0.912 12 C -0.084 4.084 13 N -0.277 5.277 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.434 6.434 17 N -0.215 5.215 18 C -0.418 4.418 19 H 0.119 0.881 20 C -0.183 4.183 21 N -0.552 5.552 22 Si 0.754 3.246 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.195 1.195 26 C 0.272 3.728 27 C -0.254 4.254 28 F -0.173 7.173 29 F -0.158 7.158 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.183 0.817 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.222 0.778 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.549 25.604 4.579 26.251 hybrid contribution 0.329 -1.317 0.527 1.456 sum -3.220 24.287 5.106 25.026 Atomic orbital electron populations 1.21928 0.91313 1.04496 1.03088 1.22335 0.99691 1.01330 0.93589 0.87247 1.19562 0.82730 0.84871 0.82445 1.90925 1.33932 1.21135 1.84017 1.48221 1.53319 1.29108 1.04724 1.22287 0.95299 0.88112 0.96682 1.22733 1.02175 0.97089 0.95104 1.22648 1.01903 0.94899 0.96962 1.21520 0.98863 0.92485 0.83167 0.91236 1.22445 1.00391 0.93022 0.92527 1.60698 1.19812 1.10284 1.36878 1.21699 1.00285 0.90034 0.96523 1.19875 0.85606 0.82819 0.88787 1.90621 1.40735 1.68126 1.43960 1.41863 1.48172 1.09005 1.22451 1.19686 1.29506 0.92769 0.99838 0.88134 1.25188 0.97344 0.96955 0.98800 1.69621 1.38013 1.12651 1.34927 0.85907 0.78044 0.79041 0.81586 1.20637 1.21116 1.19504 1.20500 0.75480 0.81449 0.95342 1.22845 1.04261 1.01291 0.97017 1.93035 1.30440 1.96508 1.97355 1.93143 1.84558 1.40904 1.97170 0.90759 0.91308 0.90604 0.91067 0.91573 0.90015 0.90724 0.90357 0.90165 0.95417 0.91493 0.81673 0.94908 0.90629 0.77837 0.92245 0.89755 0.89823 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.59 37.16 0.32 -1.16 16 2 C -0.15 -1.78 1.77 -91.77 -0.16 -1.94 16 3 H 0.11 0.97 7.85 -51.93 -0.41 0.56 16 4 C 0.52 8.00 6.53 -10.98 -0.07 7.93 16 5 O -0.43 -8.96 10.60 5.55 0.06 -8.90 16 6 N -0.61 -7.24 3.06 -163.16 -0.50 -7.74 16 7 C 0.10 0.74 5.13 -2.65 -0.01 0.73 16 8 C -0.13 -0.77 7.07 -24.70 -0.17 -0.95 16 9 C -0.13 -0.90 6.48 -24.89 -0.16 -1.07 16 10 C 0.14 1.62 3.29 -66.95 -0.22 1.40 16 11 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 12 C 0.05 0.64 5.31 -3.82 -0.02 0.62 16 13 N -0.64 -11.96 2.96 -115.06 -0.34 -12.30 16 14 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 15 C 0.44 11.70 7.82 -10.98 -0.09 11.61 16 16 O -0.55 -16.70 15.51 5.56 0.09 -16.61 16 17 N -0.58 -15.97 5.29 -10.97 -0.06 -16.03 16 18 C -0.29 -8.69 9.68 -14.94 -0.14 -8.84 16 19 H 0.10 3.21 7.16 -52.49 -0.38 2.83 16 20 C 0.02 0.49 5.50 -17.47 -0.10 0.40 16 21 N -0.91 -26.38 13.05 55.50 0.72 -25.65 16 22 Si 0.93 22.60 29.55 -169.99 -5.02 17.58 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.31 4.69 1.50 -26.73 -0.04 4.65 16 27 C -0.20 -1.97 9.14 37.16 0.34 -1.63 16 28 F -0.19 -3.54 15.81 2.25 0.04 -3.50 16 29 F -0.18 -3.62 15.75 2.25 0.04 -3.59 16 30 H 0.07 0.57 4.99 -51.93 -0.26 0.31 16 31 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 32 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 33 H 0.07 0.43 7.39 -51.93 -0.38 0.04 16 34 H 0.07 0.46 7.05 -51.93 -0.37 0.10 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.53 7.78 -51.93 -0.40 0.13 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 41 H 0.36 7.52 6.94 -39.29 -0.27 7.25 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.39 10.34 7.90 -40.82 -0.32 10.02 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.09 0.72 6.57 -51.93 -0.34 0.38 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -38.17 384.36 -6.98 -45.15 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -7.23 Total: 13.14 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -0.56 Total: 12.67 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.17 Total: -61.74 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 0.15 Total: -25.51 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.07 Total: -7.09 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.17 -6.98 -45.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569555607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.381 kcal (2) G-P(sol) polarization free energy of solvation -38.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds