Wall clock time and date at job start Wed Apr 1 2020 04:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 O 1.21294 * 119.99849 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.37101 * 119.99707 * 180.02562 * 8 6 5 10 10 H 1.08002 * 119.99704 * 359.97438 * 9 8 6 11 11 C 1.38941 * 119.99927 * 180.02562 * 9 8 6 12 12 N 1.31417 * 120.00180 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00273 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47268 * 89.99721 * 13 11 9 15 15 H 1.48498 * 109.47211 * 209.99980 * 13 11 9 16 16 H 1.48505 * 109.46734 * 329.99774 * 13 11 9 17 17 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 18 18 H 1.09002 * 109.47045 * 299.99528 * 17 2 1 19 19 C 1.52997 * 109.46891 * 180.02562 * 17 2 1 20 20 N 1.46495 * 109.47024 * 59.99997 * 17 2 1 21 21 C 1.34780 * 119.99996 * 204.99740 * 20 17 2 22 22 O 1.21287 * 119.99787 * 0.02562 * 21 20 17 23 23 C 1.50700 * 119.99942 * 180.02562 * 21 20 17 24 24 C 1.52996 * 112.85034 * 48.80837 * 23 21 20 25 25 F 1.39900 * 109.46895 * 309.66537 * 24 23 21 26 26 F 1.39895 * 109.47530 * 69.66317 * 24 23 21 27 27 C 1.53776 * 113.61352 * 277.49706 * 23 21 20 28 28 C 1.53785 * 87.08273 * 220.02195 * 27 23 21 29 29 C 1.53781 * 87.07933 * 25.43379 * 28 27 23 30 30 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 31 31 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 32 32 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 33 33 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 34 34 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 35 35 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 37 37 H 0.97000 * 119.99884 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.47300 * 60.00007 * 19 17 2 39 39 H 1.09003 * 109.47131 * 180.02562 * 19 17 2 40 40 H 1.09003 * 109.47374 * 299.99978 * 19 17 2 41 41 H 0.97002 * 120.00446 * 24.99956 * 20 17 2 42 42 H 1.09001 * 109.46976 * 189.66342 * 24 23 21 43 43 H 1.08998 * 113.61592 * 334.57081 * 27 23 21 44 44 H 1.08995 * 113.61476 * 105.47631 * 27 23 21 45 45 H 1.09004 * 113.61193 * 270.88836 * 28 27 23 46 46 H 1.08994 * 113.69085 * 139.99400 * 28 27 23 47 47 H 1.08998 * 113.61353 * 220.02093 * 29 28 27 48 48 H 1.08994 * 113.68879 * 89.12889 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5872 -0.5217 3.5561 7 8 2.8677 -1.6987 3.4703 8 7 2.7280 0.1207 4.7326 9 6 3.1878 -0.5564 5.8325 10 1 3.4368 -1.6046 5.7562 11 6 3.3325 0.1056 7.0454 12 7 3.0291 1.3809 7.1383 13 14 3.9597 -0.8167 8.5439 14 1 5.4406 -0.7224 8.5993 15 1 3.3793 -0.2177 9.7726 16 1 3.5576 -2.2433 8.4512 17 6 2.0400 -0.7213 -1.2492 18 1 1.6767 -1.7490 -1.2491 19 6 3.5699 -0.7218 -1.2488 20 7 1.5517 -0.0307 -2.4454 21 6 1.4230 -0.7031 -3.6064 22 8 1.7111 -1.8800 -3.6607 23 6 0.9212 0.0074 -4.8370 24 6 1.6439 1.3311 -5.0949 25 9 1.6451 2.0975 -3.9246 26 9 2.9624 1.0742 -5.4854 27 6 -0.6112 0.1169 -4.9032 28 6 -0.4890 -0.1818 -6.4069 29 6 0.8316 -0.8974 -6.0772 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.9173 -1.1205 1.0288 34 1 1.0869 0.6164 2.5525 35 1 2.7587 1.0463 2.1182 36 1 2.5041 1.0619 4.8010 37 1 3.1305 1.8431 7.9850 38 1 3.9329 -1.2359 -0.3588 39 1 3.9333 -1.2353 -2.1390 40 1 3.9337 0.3058 -1.2486 41 1 1.3209 0.9104 -2.4019 42 1 1.1304 1.8771 -5.8864 43 1 -1.1292 -0.6622 -4.3440 44 1 -0.9874 1.1165 -4.6859 45 1 -0.3609 0.7102 -7.0202 46 1 -1.2640 -0.8481 -6.7854 47 1 1.6203 -0.7166 -6.8075 48 1 0.7095 -1.9540 -5.8389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674714708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:35 Heat of formation + Delta-G solvation = -179.202602 kcal Electronic energy + Delta-G solvation = -31413.970519 eV Core-core repulsion = 26753.123401 eV Total energy + Delta-G solvation = -4660.847118 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.12208 -48.11468 -41.61261 -40.30080 -39.39454 -38.13349 -36.06393 -35.37358 -33.29280 -32.11251 -30.90773 -29.38551 -28.03653 -26.74633 -25.94520 -25.91135 -24.28912 -22.05405 -21.62987 -21.12104 -20.27719 -19.93041 -19.13489 -18.27085 -18.21938 -17.81153 -17.47209 -17.08326 -16.87157 -16.43956 -16.03006 -15.89083 -15.69121 -15.47399 -15.40980 -15.11914 -14.81869 -14.64902 -14.44379 -14.26976 -14.14636 -13.74466 -13.59600 -13.51601 -13.49935 -13.24780 -13.05815 -12.91498 -12.80587 -12.67663 -12.63536 -12.42836 -12.37168 -12.25754 -12.12844 -11.67902 -11.51731 -11.47805 -11.39904 -10.84375 -10.35981 -10.23598 -10.02446 -9.39847 -8.47492 -5.96137 1.37262 1.39404 1.41211 1.53951 1.92596 2.03946 2.29155 2.58440 2.92201 2.96455 3.19551 3.20298 3.27670 3.47605 3.51016 3.66313 3.74511 3.89793 3.99657 4.07443 4.10718 4.28635 4.33903 4.38567 4.43689 4.51488 4.56954 4.65126 4.69956 4.75236 4.80800 4.88510 4.93678 4.95637 5.00740 5.10465 5.10941 5.32404 5.35069 5.39084 5.40631 5.87179 6.07854 6.32317 6.42328 6.59262 7.10396 7.11802 7.55041 8.10617 8.69817 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027259 B = 0.001895 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.930736 B =14774.666285 C =14869.189336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.067 0.933 4 N -0.677 5.677 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.624 6.624 8 N -0.572 5.572 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.919 5.919 13 Si 0.993 3.007 14 H -0.271 1.271 15 H -0.270 1.270 16 H -0.274 1.274 17 C 0.146 3.854 18 H 0.072 0.928 19 C -0.164 4.164 20 N -0.705 5.705 21 C 0.523 3.477 22 O -0.573 6.573 23 C -0.178 4.178 24 C 0.285 3.715 25 F -0.203 7.203 26 F -0.214 7.214 27 C -0.105 4.105 28 C -0.127 4.127 29 C -0.112 4.112 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.345 0.655 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.413 0.587 42 H 0.174 0.826 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 7.860 -30.171 32.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.085 0.915 4 N -0.313 5.313 5 C -0.066 4.066 6 C 0.224 3.776 7 O -0.511 6.511 8 N -0.209 5.209 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.196 1.196 15 H -0.194 1.194 16 H -0.199 1.199 17 C 0.041 3.959 18 H 0.090 0.910 19 C -0.223 4.223 20 N -0.361 5.361 21 C 0.310 3.690 22 O -0.452 6.452 23 C -0.182 4.182 24 C 0.232 3.768 25 F -0.184 7.184 26 F -0.195 7.195 27 C -0.143 4.143 28 C -0.165 4.165 29 C -0.150 4.150 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.167 0.833 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.254 0.746 42 H 0.191 0.809 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.354 6.169 -29.886 31.918 hybrid contribution 1.408 0.583 1.214 1.948 sum -7.946 6.753 -28.673 30.510 Atomic orbital electron populations 1.21789 0.93162 1.02057 1.02347 1.21755 0.97136 0.96312 0.87426 0.91544 1.60189 1.35199 1.32499 1.03398 1.21590 1.02565 0.93613 0.88827 1.20869 0.83261 0.87970 0.85461 1.90501 1.56668 1.18295 1.85609 1.41914 1.58233 1.12589 1.08170 1.19652 1.42164 0.95929 0.88597 0.90441 1.26033 0.97238 0.96668 1.01339 1.69669 1.48500 1.09615 1.28190 0.84933 0.78488 0.77982 0.76960 1.19615 1.19430 1.19930 1.20851 0.93830 0.97111 0.84144 0.90954 1.22183 0.95345 1.02700 1.02056 1.46234 1.66158 1.14981 1.08704 1.20622 0.76653 0.86930 0.84834 1.90702 1.51221 1.17842 1.85469 1.23583 1.01573 0.97061 0.95996 1.22049 0.79569 0.89462 0.85701 1.92849 1.96575 1.76898 1.52100 1.92997 1.40394 1.95022 1.91077 1.22919 0.87667 1.05029 0.98647 1.22975 0.96353 1.01897 0.95225 1.22837 1.00174 0.98913 0.93076 0.92109 0.90362 0.93453 0.83318 0.87503 0.91223 0.76882 0.91264 0.91592 0.93020 0.91210 0.74554 0.80919 0.89435 0.87175 0.86627 0.89272 0.89733 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.26 71.98 0.67 -2.24 16 2 C 0.08 1.99 2.28 44.91 0.10 2.09 16 3 H 0.07 1.37 7.80 -2.39 -0.02 1.35 16 4 N -0.68 -21.90 5.93 -495.56 -2.94 -24.84 16 5 C 0.07 2.27 5.97 85.56 0.51 2.78 16 6 C 0.44 21.05 7.82 87.66 0.69 21.74 16 7 O -0.62 -35.36 15.78 -3.07 -0.05 -35.41 16 8 N -0.57 -29.55 5.29 -306.98 -1.62 -31.17 16 9 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 10 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 11 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 12 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 13 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 C 0.15 3.60 2.29 44.99 0.10 3.71 16 18 H 0.07 2.20 7.58 -2.39 -0.02 2.18 16 19 C -0.16 -4.16 9.25 71.98 0.67 -3.49 16 20 N -0.71 -14.13 4.11 -442.53 -1.82 -15.94 16 21 C 0.52 11.61 6.87 87.66 0.60 12.21 16 22 O -0.57 -17.92 15.56 -3.05 -0.05 -17.96 16 23 C -0.18 -2.26 0.92 -52.40 -0.05 -2.31 16 24 C 0.29 2.80 4.57 71.98 0.33 3.12 16 25 F -0.20 -2.44 14.50 44.97 0.65 -1.79 16 26 F -0.21 -3.56 17.06 44.97 0.77 -2.79 16 27 C -0.11 -0.71 7.20 31.12 0.22 -0.49 16 28 C -0.13 -0.51 7.73 31.12 0.24 -0.27 16 29 C -0.11 -1.31 6.93 31.12 0.22 -1.09 16 30 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 31 H 0.08 1.24 7.44 -2.39 -0.02 1.23 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.35 11.95 5.86 -89.69 -0.53 11.42 16 34 H 0.11 3.27 7.44 -2.39 -0.02 3.25 16 35 H 0.07 2.06 8.06 -2.39 -0.02 2.04 16 36 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 37 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.07 1.77 6.21 -2.39 -0.01 1.76 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.41 6.48 5.87 -92.71 -0.54 5.93 16 42 H 0.17 0.03 7.34 -2.39 -0.02 0.01 16 43 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 44 H 0.11 0.21 8.10 -2.39 -0.02 0.19 16 45 H 0.12 -0.16 7.64 -2.39 -0.02 -0.18 16 46 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.08 0.90 7.93 -2.39 -0.02 0.88 16 48 H 0.08 1.40 7.43 -2.39 -0.02 1.39 16 Total: -1.00 -76.72 394.60 2.04 -74.68 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.79 Total: 42.01 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.58 Total: 17.18 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -6.10 Total: -121.30 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.10 Total: -53.37 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.42 Total: -4.58 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -76.72 2.04 -74.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674714708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.527 kcal (2) G-P(sol) polarization free energy of solvation -76.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds