Wall clock time and date at job start Wed Apr 1 2020 04:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46710 * 2 1 4 4 C 1.52998 * 109.46972 * 119.99867 * 2 1 3 5 5 C 1.52999 * 109.46856 * 185.00229 * 4 2 1 6 6 N 1.46899 * 109.47182 * 180.02562 * 5 4 2 7 7 C 1.46901 * 111.00042 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46883 * 180.02562 * 7 6 5 9 9 O 1.21291 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99535 * 180.02562 * 8 7 6 11 11 C 1.37103 * 119.99370 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00318 * 0.02562 * 11 10 8 13 13 C 1.38960 * 119.99471 * 179.97438 * 11 10 8 14 14 N 1.31406 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 119.99732 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47378 * 89.99632 * 15 13 11 17 17 H 1.48496 * 109.47175 * 209.99994 * 15 13 11 18 18 H 1.48502 * 109.47231 * 329.99922 * 15 13 11 19 19 N 1.46498 * 109.47068 * 240.00336 * 2 1 3 20 20 C 1.34769 * 120.00327 * 84.99573 * 19 2 1 21 21 O 1.21283 * 120.00172 * 0.02562 * 20 19 2 22 22 C 1.50699 * 120.00086 * 180.02562 * 20 19 2 23 23 C 1.52994 * 112.85110 * 48.80168 * 22 20 19 24 24 C 1.53782 * 113.61498 * 180.02562 * 22 20 19 25 25 C 1.53781 * 87.08260 * 89.19810 * 24 22 20 26 26 F 1.39905 * 113.61459 * 139.98223 * 25 24 22 27 27 F 1.39901 * 113.61682 * 270.79882 * 25 24 22 28 28 C 1.53780 * 87.17569 * 25.39011 * 25 24 22 29 29 H 1.08995 * 109.46692 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47201 * 299.99819 * 1 2 3 31 31 H 1.09000 * 109.47346 * 59.99839 * 1 2 3 32 32 H 1.08996 * 109.47256 * 304.99902 * 4 2 1 33 33 H 1.08999 * 109.47047 * 65.00356 * 4 2 1 34 34 H 1.09005 * 109.47108 * 300.00085 * 5 4 2 35 35 H 1.09000 * 109.47502 * 59.99777 * 5 4 2 36 36 H 1.00902 * 111.00052 * 56.04290 * 6 5 4 37 37 H 1.08998 * 109.47299 * 299.99837 * 7 6 5 38 38 H 1.08999 * 109.47177 * 60.00175 * 7 6 5 39 39 H 0.96992 * 120.00321 * 359.97438 * 10 8 7 40 40 H 0.97000 * 119.99991 * 180.02562 * 14 13 11 41 41 H 0.97000 * 119.99327 * 264.99752 * 19 2 1 42 42 H 1.09004 * 109.47383 * 191.19387 * 23 22 20 43 43 H 1.08996 * 109.47611 * 311.19975 * 23 22 20 44 44 H 1.09003 * 109.47085 * 71.19884 * 23 22 20 45 45 H 1.09001 * 113.61250 * 334.64628 * 24 22 20 46 46 H 1.09002 * 113.68969 * 203.75574 * 24 22 20 47 47 H 1.09000 * 113.61461 * 89.15487 * 28 25 24 48 48 H 1.08995 * 113.61894 * 220.06224 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0546 -1.3062 2.5128 7 6 5.5182 -1.2236 2.6077 8 6 5.9827 -1.9445 3.8469 9 8 5.1740 -2.4745 4.5792 10 7 7.2966 -1.9994 4.1419 11 6 7.7191 -2.6548 5.2696 12 1 6.9992 -3.1274 5.9212 13 6 9.0739 -2.7119 5.5735 14 7 9.9499 -2.1372 4.7803 15 14 9.6496 -3.6054 7.1094 16 1 9.9167 -5.0293 6.7830 17 1 10.8941 -2.9714 7.6138 18 1 8.5958 -3.5260 8.1527 19 7 2.0184 -0.6905 -1.1962 20 6 2.1470 -0.0182 -2.3571 21 8 1.8590 1.1586 -2.4115 22 6 2.6488 -0.7288 -3.5877 23 6 1.9263 -2.0525 -3.8456 24 6 2.7389 0.1762 -4.8278 25 6 4.1697 0.5165 -4.3784 26 9 5.0845 0.5966 -5.4339 27 9 4.2395 1.6147 -3.5145 28 6 4.1830 -0.8395 -3.6533 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0727 0.4259 35 1 3.8532 0.4371 1.3573 36 1 3.7452 -2.2665 2.5272 37 1 5.9660 -1.6872 1.7287 38 1 5.8204 -0.1777 2.6606 39 1 7.9433 -1.5753 3.5565 40 1 10.8956 -2.1774 4.9922 41 1 2.2491 -1.6317 -1.1526 42 1 2.4553 -2.6107 -4.6180 43 1 1.9015 -2.6380 -2.9266 44 1 0.9071 -1.8517 -4.1761 45 1 2.0579 1.0267 -4.7981 46 1 2.6954 -0.3681 -5.7713 47 1 4.5351 -1.6633 -4.2743 48 1 4.6661 -0.8078 -2.6768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699146607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:22 Heat of formation + Delta-G solvation = -160.020947 kcal Electronic energy + Delta-G solvation = -30841.491442 eV Core-core repulsion = 26181.476104 eV Total energy + Delta-G solvation = -4660.015339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.05883 -47.38210 -40.91488 -38.44322 -38.02106 -36.67777 -35.04406 -33.84515 -32.09119 -31.23148 -29.92077 -29.25118 -26.81487 -26.26833 -24.73798 -24.03543 -22.56583 -21.99821 -21.01216 -19.81768 -19.22312 -17.90192 -17.76096 -17.16956 -16.99521 -16.76293 -16.46107 -16.18249 -15.54768 -15.23937 -14.77542 -14.67949 -14.40976 -14.24564 -14.03625 -13.88286 -13.76334 -13.67273 -13.59911 -13.57920 -13.13692 -13.10159 -12.96145 -12.79818 -12.59101 -12.27565 -12.23087 -11.72307 -11.54069 -11.51006 -11.43698 -11.32107 -11.17469 -11.06454 -10.98021 -10.85967 -10.40349 -10.22966 -10.09367 -9.52261 -9.40536 -8.48316 -8.08760 -7.97400 -6.42852 -3.83811 2.19852 2.69939 3.08230 3.16805 3.25657 3.31677 3.34547 3.69487 3.79224 3.88989 3.93346 4.02068 4.23263 4.34225 4.67097 4.72927 4.76991 4.81876 4.87847 4.94568 4.99283 5.09376 5.14988 5.20806 5.23610 5.25787 5.30737 5.32063 5.45841 5.47719 5.49646 5.55787 5.71417 5.75302 5.86674 5.91963 5.97623 6.03338 6.24255 6.25453 7.13699 7.17730 7.54043 7.62902 7.87224 8.05011 8.59870 9.16539 9.52968 10.04243 10.74897 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.002063 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.799609 B =13566.743288 C =15001.430826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 N -0.718 5.718 20 C 0.534 3.466 21 O -0.522 6.522 22 C -0.108 4.108 23 C -0.131 4.131 24 C -0.144 4.144 25 C 0.255 3.745 26 F -0.191 7.191 27 F -0.167 7.167 28 C -0.151 4.151 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.348 0.652 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.400 0.600 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.103 1.565 -22.200 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.163 4.163 5 C -0.070 4.070 6 N -0.301 5.301 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.370 5.370 20 C 0.318 3.682 21 O -0.397 6.397 22 C -0.112 4.112 23 C -0.189 4.189 24 C -0.182 4.182 25 C 0.219 3.781 26 F -0.172 7.172 27 F -0.147 7.147 28 C -0.189 4.189 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.235 0.765 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.126 0.874 46 H 0.137 0.863 47 H 0.142 0.858 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.719 2.663 -21.279 27.193 hybrid contribution 1.445 -1.064 -0.315 1.822 sum -15.274 1.599 -21.594 26.498 Atomic orbital electron populations 1.22150 0.94930 1.02182 1.02683 1.21036 0.94101 0.97794 0.83281 0.89044 1.21883 0.95877 1.01237 0.97308 1.21966 0.94243 0.99873 0.90916 1.60058 1.09824 1.21609 1.38606 1.21668 0.88346 1.01324 0.96851 1.19806 0.83335 0.85934 0.88339 1.90518 1.53326 1.50640 1.52328 1.41872 1.05429 1.48848 1.23868 1.19706 0.91968 1.30189 1.01070 0.87912 1.25272 0.95633 0.97808 0.99255 1.69610 1.02539 1.44168 1.37976 0.85852 0.78163 0.79056 0.81192 1.20424 1.20902 1.19382 1.46060 1.67295 1.14100 1.09572 1.19695 0.77725 0.86876 0.83859 1.90743 1.48994 1.15326 1.84599 1.21801 0.96578 0.98098 0.94673 1.21683 1.00855 0.93413 1.02918 1.24059 0.94570 1.01267 0.98277 1.21961 0.89588 0.85693 0.80884 1.93017 1.69645 1.96874 1.57629 1.93102 1.96712 1.55686 1.69235 1.24253 0.94588 0.96418 1.03641 0.92414 0.91269 0.92197 0.88984 0.91309 0.95772 0.91033 0.83314 0.94014 0.89620 0.77455 0.91845 0.76539 0.90749 0.91458 0.91146 0.87442 0.86282 0.85766 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.14 1.22 2.57 -67.93 -0.17 1.04 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.12 -1.12 5.01 -26.73 -0.13 -1.25 16 5 C 0.06 0.68 5.57 -3.83 -0.02 0.66 16 6 N -0.67 -10.36 6.13 -115.06 -0.70 -11.07 16 7 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 8 C 0.44 10.37 7.82 -10.98 -0.09 10.29 16 9 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 10 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 11 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 15 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 N -0.72 -5.43 4.41 -53.81 -0.24 -5.67 16 20 C 0.53 4.95 6.34 -10.99 -0.07 4.88 16 21 O -0.52 -6.85 14.39 5.56 0.08 -6.77 16 22 C -0.11 -0.69 1.26 -154.75 -0.20 -0.89 16 23 C -0.13 -0.48 9.12 37.15 0.34 -0.14 16 24 C -0.14 -0.99 6.82 -25.92 -0.18 -1.17 16 25 C 0.26 2.37 3.26 -25.92 -0.08 2.29 16 26 F -0.19 -1.95 17.41 2.25 0.04 -1.91 16 27 F -0.17 -2.14 15.71 2.25 0.04 -2.11 16 28 C -0.15 -0.98 7.02 -25.82 -0.18 -1.16 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.02 0.25 7.75 -51.93 -0.40 -0.15 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.35 5.43 8.43 -39.29 -0.33 5.10 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.40 2.20 7.49 -40.82 -0.31 1.90 16 42 H 0.07 0.17 7.95 -51.93 -0.41 -0.24 16 43 H 0.07 0.20 7.00 -51.93 -0.36 -0.16 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.11 0.90 7.43 -51.93 -0.39 0.51 16 46 H 0.12 0.51 8.10 -51.93 -0.42 0.09 16 47 H 0.12 0.51 7.97 -51.93 -0.41 0.10 16 48 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -34.25 403.11 -7.17 -41.42 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -7.49 Total: 11.43 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -0.70 Total: 6.50 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.28 Total: -54.94 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.17 Total: -22.46 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.07 Total: -4.02 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.25 -7.17 -41.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699146607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.598 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds