Wall clock time and date at job start Wed Apr 1 2020 05:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47088 * 2 1 4 4 C 1.52997 * 109.47262 * 119.99730 * 2 1 3 5 5 N 1.46897 * 109.47105 * 175.00016 * 4 2 1 6 6 C 1.46905 * 110.99896 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99963 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00003 * 180.02562 * 7 6 5 10 10 C 1.37101 * 120.00278 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99701 * 359.97438 * 10 9 7 12 12 C 1.38943 * 120.00442 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00425 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99968 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47060 * 90.00349 * 14 12 10 16 16 H 1.48502 * 109.47250 * 210.00296 * 14 12 10 17 17 H 1.48507 * 109.46916 * 330.00160 * 14 12 10 18 18 N 1.46498 * 109.47104 * 239.99835 * 2 1 3 19 19 C 1.34783 * 120.00015 * 85.00064 * 18 2 1 20 20 O 1.21479 * 119.99973 * 359.97438 * 19 18 2 21 21 C 1.48460 * 119.99946 * 180.02562 * 19 18 2 22 22 C 1.39536 * 120.54837 * 179.97438 * 21 19 18 23 23 C 1.38760 * 118.26291 * 180.02562 * 22 21 19 24 24 N 1.32211 * 119.14431 * 359.72983 * 23 22 21 25 25 C 1.31876 * 121.03610 * 0.54436 * 24 23 22 26 26 C 1.50706 * 119.04029 * 179.71562 * 25 24 23 27 27 C 1.53000 * 117.49681 * 299.73343 * 26 25 24 28 28 C 1.53002 * 60.02940 * 107.47810 * 27 26 25 29 29 N 1.31577 * 121.91776 * 359.44051 * 25 24 23 30 30 H 1.09011 * 109.47208 * 59.99960 * 1 2 3 31 31 H 1.08999 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47475 * 300.00309 * 1 2 3 33 33 H 1.08996 * 109.47296 * 294.99842 * 4 2 1 34 34 H 1.08998 * 109.46994 * 54.99709 * 4 2 1 35 35 H 1.00896 * 111.00274 * 56.04920 * 5 4 2 36 36 H 1.08999 * 109.47089 * 299.99770 * 6 5 4 37 37 H 1.09006 * 109.47017 * 59.99978 * 6 5 4 38 38 H 0.97005 * 120.00064 * 0.02562 * 9 7 6 39 39 H 0.97004 * 120.00298 * 179.97438 * 13 12 10 40 40 H 0.96996 * 120.00339 * 264.99686 * 18 2 1 41 41 H 1.08003 * 120.86860 * 0.04105 * 22 21 19 42 42 H 1.08000 * 120.42751 * 180.02562 * 23 22 21 43 43 H 1.08999 * 115.54993 * 154.06536 * 26 25 24 44 44 H 1.09002 * 117.49833 * 214.97915 * 27 26 25 45 45 H 1.09002 * 117.49953 * 359.97438 * 27 26 25 46 46 H 1.09000 * 117.49996 * 107.50493 * 28 27 26 47 47 H 1.08999 * 117.49664 * 252.51862 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 4.0303 -1.5158 2.3762 7 6 5.5315 -1.6053 2.2802 8 8 6.1065 -1.1411 1.3183 9 7 6.2352 -2.2021 3.2625 10 6 7.6010 -2.2831 3.1755 11 1 8.1131 -1.8691 2.3194 12 6 8.3265 -2.8988 4.1880 13 7 9.6355 -2.9769 4.1044 14 14 7.4408 -3.6156 5.6684 15 1 7.0906 -5.0330 5.3971 16 1 8.3268 -3.5436 6.8580 17 1 6.2010 -2.8400 5.9268 18 7 2.0183 -0.6906 -1.1961 19 6 2.1470 -0.0183 -2.3572 20 8 1.8577 1.1603 -2.4119 21 6 2.6413 -0.7183 -3.5694 22 6 2.7785 -0.0336 -4.7775 23 6 3.2442 -0.7344 -5.8808 24 7 3.5449 -2.0152 -5.7501 25 6 3.3985 -2.6335 -4.5945 26 6 3.7489 -4.0960 -4.4977 27 6 2.9797 -5.0676 -5.3952 28 6 4.4419 -4.7378 -5.7023 29 7 2.9605 -2.0093 -3.5222 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.7517 -0.1582 2.1369 34 1 1.6053 -1.7197 1.2952 35 1 3.9279 0.0826 1.0824 36 1 3.7557 -0.9587 3.2719 37 1 3.6094 -2.5199 2.4295 38 1 5.7753 -2.5743 4.0313 39 1 10.1420 -3.4065 4.8114 40 1 2.2490 -1.6317 -1.1526 41 1 2.5289 1.0146 -4.8517 42 1 3.3641 -0.2388 -6.8329 43 1 4.0353 -4.4462 -3.5061 44 1 2.7605 -6.0571 -4.9941 45 1 2.2200 -4.6489 -6.0552 46 1 5.1846 -5.5104 -5.5033 47 1 4.6440 -4.1020 -6.5642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754285798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:15 Heat of formation + Delta-G solvation = 12.555898 kcal Electronic energy + Delta-G solvation = -29537.248235 eV Core-core repulsion = 25335.405576 eV Total energy + Delta-G solvation = -4201.842659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53976 -39.74794 -38.50049 -37.28870 -36.75161 -34.49537 -34.12369 -33.68278 -32.06940 -31.67432 -30.99238 -27.79226 -26.05879 -25.27619 -25.01602 -23.23762 -22.62517 -22.51393 -21.11088 -20.50011 -19.39201 -18.46939 -18.29433 -17.93241 -16.68274 -16.11726 -15.96854 -15.70452 -15.58946 -15.32567 -14.98970 -14.88832 -14.62610 -14.34999 -14.16082 -14.02854 -14.00369 -13.35526 -13.20987 -12.71167 -12.62479 -12.48005 -12.26195 -12.12675 -11.78075 -11.76271 -11.71954 -11.25671 -11.17737 -11.17225 -11.07876 -10.99064 -10.72774 -10.60869 -10.49613 -9.98581 -9.60113 -9.58264 -9.51669 -9.17343 -8.61934 -8.22808 -8.17622 -6.31831 -3.83412 0.26911 0.64284 2.56707 2.82014 3.01017 3.05618 3.13863 3.34879 3.41101 3.69149 3.72943 3.92276 3.98739 4.09340 4.33179 4.52031 4.62690 4.66497 4.71042 4.77507 4.81181 4.88617 4.97170 5.15015 5.21545 5.23782 5.34166 5.35722 5.40656 5.47822 5.50443 5.59347 5.62376 5.76831 5.79561 5.84632 5.90224 5.95080 5.96877 6.02078 6.32996 6.58792 6.99833 7.38500 7.48457 7.57221 7.74802 8.02337 8.13683 8.58888 8.94300 9.41501 9.81900 10.81344 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008975 B = 0.002609 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.054380 B =10731.399446 C =12716.373680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.090 0.910 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.681 5.681 19 C 0.573 3.427 20 O -0.534 6.534 21 C 0.141 3.859 22 C -0.181 4.181 23 C 0.152 3.848 24 N -0.505 5.505 25 C 0.352 3.648 26 C -0.104 4.104 27 C -0.155 4.155 28 C -0.152 4.152 29 N -0.484 5.484 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.352 0.648 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.418 0.582 41 H 0.160 0.840 42 H 0.177 0.823 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.639 -0.047 -14.560 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.084 4.084 7 C 0.235 3.765 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.331 5.331 19 C 0.356 3.644 20 O -0.410 6.410 21 C -0.008 4.008 22 C -0.203 4.203 23 C -0.015 4.015 24 N -0.219 5.219 25 C 0.085 3.915 26 C -0.124 4.124 27 C -0.193 4.193 28 C -0.189 4.189 29 N -0.200 5.200 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.255 0.745 41 H 0.178 0.822 42 H 0.194 0.806 43 H 0.152 0.848 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.020 -0.450 -15.385 25.253 hybrid contribution -0.635 0.590 2.053 2.229 sum -20.655 0.141 -13.331 24.584 Atomic orbital electron populations 1.22144 0.94603 1.02469 1.02797 1.21060 0.93870 0.97587 0.83730 0.89219 1.22316 0.89456 1.00872 0.95551 1.60034 1.03101 1.27007 1.39826 1.21711 0.95090 1.00060 0.91566 1.19699 0.87936 0.84127 0.84744 1.90581 1.70984 1.50424 1.32482 1.42200 1.07860 1.53070 1.19891 1.19427 0.79578 1.35935 1.08423 0.86335 1.25038 0.95436 0.97647 0.98044 1.69622 1.05090 1.43295 1.34144 0.86665 0.79604 0.80020 0.83031 1.19588 1.20205 1.19548 1.45689 1.64176 1.15192 1.08076 1.17733 0.78099 0.85896 0.82671 1.90778 1.50723 1.14805 1.84687 1.21642 0.94543 0.90090 0.94479 1.22948 1.00401 1.03573 0.93423 1.23320 0.89967 0.89342 0.98853 1.68049 1.16020 1.10774 1.27098 1.22097 0.90167 0.95706 0.83480 1.20705 1.07471 0.85717 0.98537 1.22986 0.95656 0.99125 1.01583 1.23046 0.95095 1.02379 0.98405 1.68064 1.11232 1.08809 1.31892 0.91806 0.92125 0.91317 0.93600 0.90235 0.82824 0.93692 0.89398 0.79713 0.91609 0.74507 0.82227 0.80598 0.84760 0.87794 0.88710 0.87913 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.15 0.35 -1.03 16 2 C 0.14 1.52 2.81 -67.94 -0.19 1.33 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C 0.05 0.50 5.24 -3.83 -0.02 0.48 16 5 N -0.67 -9.82 5.85 -115.06 -0.67 -10.49 16 6 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 7 C 0.45 10.11 7.82 -10.99 -0.09 10.02 16 8 O -0.56 -15.18 15.78 5.54 0.09 -15.09 16 9 N -0.59 -13.99 5.09 -10.96 -0.06 -14.04 16 10 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 11 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.81 13.96 55.50 0.77 -25.04 16 14 Si 0.88 19.27 27.74 -169.99 -4.71 14.56 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 18 N -0.68 -8.30 4.79 -54.56 -0.26 -8.56 16 19 C 0.57 7.82 7.79 -12.05 -0.09 7.73 16 20 O -0.53 -8.24 16.09 5.38 0.09 -8.15 16 21 C 0.14 1.82 6.79 -82.63 -0.56 1.26 16 22 C -0.18 -1.90 9.72 -38.91 -0.38 -2.28 16 23 C 0.15 1.40 11.31 -17.20 -0.19 1.21 16 24 N -0.51 -5.67 9.32 -10.74 -0.10 -5.77 16 25 C 0.35 4.34 7.31 -157.31 -1.15 3.19 16 26 C -0.10 -1.08 6.24 -91.73 -0.57 -1.65 16 27 C -0.16 -1.24 10.23 -26.73 -0.27 -1.51 16 28 C -0.15 -1.29 10.01 -26.69 -0.27 -1.56 16 29 N -0.48 -6.40 9.60 -7.32 -0.07 -6.47 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.42 5.15 7.99 -40.82 -0.33 4.82 16 41 H 0.16 1.43 7.74 -52.48 -0.41 1.03 16 42 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.11 0.98 7.53 -51.93 -0.39 0.59 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -35.19 403.89 -9.27 -44.46 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -6.71 Total: 18.36 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -3.71 Total: 10.16 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -0.39 Total: -70.38 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.17 Total: -23.25 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.19 -9.27 -44.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.013 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds