Wall clock time and date at job start Wed Apr 1 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47088 * 2 1 4 4 C 1.52997 * 109.47262 * 119.99730 * 2 1 3 5 5 N 1.46897 * 109.47105 * 175.00016 * 4 2 1 6 6 C 1.46905 * 110.99896 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99963 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00003 * 180.02562 * 7 6 5 10 10 C 1.37101 * 120.00278 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99701 * 359.97438 * 10 9 7 12 12 C 1.38943 * 120.00442 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00425 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99968 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47060 * 90.00349 * 14 12 10 16 16 H 1.48502 * 109.47250 * 210.00296 * 14 12 10 17 17 H 1.48507 * 109.46916 * 330.00160 * 14 12 10 18 18 N 1.46498 * 109.47104 * 239.99835 * 2 1 3 19 19 C 1.34783 * 120.00015 * 85.00064 * 18 2 1 20 20 O 1.21479 * 119.99973 * 359.97438 * 19 18 2 21 21 C 1.48460 * 119.99946 * 180.02562 * 19 18 2 22 22 C 1.39536 * 120.54837 * 179.97438 * 21 19 18 23 23 C 1.38760 * 118.26291 * 180.02562 * 22 21 19 24 24 N 1.32211 * 119.14431 * 359.72983 * 23 22 21 25 25 C 1.31876 * 121.03610 * 0.54436 * 24 23 22 26 26 C 1.50706 * 119.04029 * 179.71562 * 25 24 23 27 27 C 1.53000 * 117.49681 * 299.73343 * 26 25 24 28 28 C 1.53002 * 60.02940 * 107.47810 * 27 26 25 29 29 N 1.31577 * 121.91776 * 359.44051 * 25 24 23 30 30 H 1.09011 * 109.47208 * 59.99960 * 1 2 3 31 31 H 1.08999 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47475 * 300.00309 * 1 2 3 33 33 H 1.08996 * 109.47296 * 294.99842 * 4 2 1 34 34 H 1.08998 * 109.46994 * 54.99709 * 4 2 1 35 35 H 1.00896 * 111.00274 * 56.04920 * 5 4 2 36 36 H 1.08999 * 109.47089 * 299.99770 * 6 5 4 37 37 H 1.09006 * 109.47017 * 59.99978 * 6 5 4 38 38 H 0.97005 * 120.00064 * 0.02562 * 9 7 6 39 39 H 0.97004 * 120.00298 * 179.97438 * 13 12 10 40 40 H 0.96996 * 120.00339 * 264.99686 * 18 2 1 41 41 H 1.08003 * 120.86860 * 0.04105 * 22 21 19 42 42 H 1.08000 * 120.42751 * 180.02562 * 23 22 21 43 43 H 1.08999 * 115.54993 * 154.06536 * 26 25 24 44 44 H 1.09002 * 117.49833 * 214.97915 * 27 26 25 45 45 H 1.09002 * 117.49953 * 359.97438 * 27 26 25 46 46 H 1.09000 * 117.49996 * 107.50493 * 28 27 26 47 47 H 1.08999 * 117.49664 * 252.51862 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 4.0303 -1.5158 2.3762 7 6 5.5315 -1.6053 2.2802 8 8 6.1065 -1.1411 1.3183 9 7 6.2352 -2.2021 3.2625 10 6 7.6010 -2.2831 3.1755 11 1 8.1131 -1.8691 2.3194 12 6 8.3265 -2.8988 4.1880 13 7 9.6355 -2.9769 4.1044 14 14 7.4408 -3.6156 5.6684 15 1 7.0906 -5.0330 5.3971 16 1 8.3268 -3.5436 6.8580 17 1 6.2010 -2.8400 5.9268 18 7 2.0183 -0.6906 -1.1961 19 6 2.1470 -0.0183 -2.3572 20 8 1.8577 1.1603 -2.4119 21 6 2.6413 -0.7183 -3.5694 22 6 2.7785 -0.0336 -4.7775 23 6 3.2442 -0.7344 -5.8808 24 7 3.5449 -2.0152 -5.7501 25 6 3.3985 -2.6335 -4.5945 26 6 3.7489 -4.0960 -4.4977 27 6 2.9797 -5.0676 -5.3952 28 6 4.4419 -4.7378 -5.7023 29 7 2.9605 -2.0093 -3.5222 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.7517 -0.1582 2.1369 34 1 1.6053 -1.7197 1.2952 35 1 3.9279 0.0826 1.0824 36 1 3.7557 -0.9587 3.2719 37 1 3.6094 -2.5199 2.4295 38 1 5.7753 -2.5743 4.0313 39 1 10.1420 -3.4065 4.8114 40 1 2.2490 -1.6317 -1.1526 41 1 2.5289 1.0146 -4.8517 42 1 3.3641 -0.2388 -6.8329 43 1 4.0353 -4.4462 -3.5061 44 1 2.7605 -6.0571 -4.9941 45 1 2.2200 -4.6489 -6.0552 46 1 5.1846 -5.5104 -5.5033 47 1 4.6440 -4.1020 -6.5642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754285798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:14 Heat of formation + Delta-G solvation = -15.616892 kcal Electronic energy + Delta-G solvation = -29538.469899 eV Core-core repulsion = 25335.405576 eV Total energy + Delta-G solvation = -4203.064323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.40834 -40.74824 -40.26078 -38.08959 -37.76328 -36.09447 -35.36210 -34.88217 -33.74814 -32.91624 -31.91965 -29.10716 -26.97871 -26.56289 -26.09779 -24.55716 -23.45442 -23.21282 -21.97501 -21.44581 -21.26809 -20.27323 -19.30333 -18.81518 -17.90690 -17.44783 -16.92951 -16.80780 -16.58842 -16.54060 -16.39664 -15.92823 -15.65247 -15.53020 -15.14234 -15.13031 -15.00011 -14.83813 -14.56110 -14.29171 -14.06404 -13.43756 -13.24303 -13.15063 -13.02902 -12.82288 -12.75472 -12.41806 -12.41633 -12.06275 -11.99591 -11.97889 -11.91421 -11.85141 -11.58199 -11.51687 -11.37865 -10.47185 -10.45509 -10.36781 -10.25507 -10.11770 -9.34965 -8.41905 -6.03267 -0.64365 -0.17391 1.29820 1.36006 1.44767 1.59350 1.90612 1.96106 2.22944 2.51839 2.58375 2.70681 2.89125 3.14482 3.15399 3.35975 3.53221 3.67126 3.78699 3.89677 3.92898 4.10510 4.11061 4.15225 4.20908 4.33073 4.46319 4.48335 4.55761 4.58046 4.63962 4.74755 4.76885 4.78442 4.95790 5.00436 5.11350 5.21516 5.26033 5.31147 5.41310 5.51854 5.73640 5.88362 6.01968 6.28877 6.39016 6.59254 6.86482 6.87743 7.02678 7.39364 7.96994 8.76012 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008975 B = 0.002609 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.054380 B =10731.399446 C =12716.373680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 H 0.072 0.928 4 C 0.055 3.945 5 N -0.687 5.687 6 C 0.064 3.936 7 C 0.446 3.554 8 O -0.617 6.617 9 N -0.590 5.590 10 C -0.330 4.330 11 H 0.051 0.949 12 C -0.016 4.016 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.256 1.256 16 H -0.276 1.276 17 H -0.229 1.229 18 N -0.677 5.677 19 C 0.567 3.433 20 O -0.560 6.560 21 C 0.115 3.885 22 C -0.181 4.181 23 C 0.161 3.839 24 N -0.512 5.512 25 C 0.337 3.663 26 C -0.129 4.129 27 C -0.137 4.137 28 C -0.146 4.146 29 N -0.504 5.504 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.340 0.660 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.391 0.609 39 H 0.279 0.721 40 H 0.417 0.583 41 H 0.173 0.827 42 H 0.220 0.780 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.890 -1.276 -13.168 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.074 4.074 5 N -0.319 5.319 6 C -0.068 4.068 7 C 0.234 3.766 8 O -0.502 6.502 9 N -0.232 5.232 10 C -0.459 4.459 11 H 0.069 0.931 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.152 1.152 18 N -0.326 5.326 19 C 0.351 3.649 20 O -0.439 6.439 21 C -0.033 4.033 22 C -0.204 4.204 23 C -0.007 4.007 24 N -0.227 5.227 25 C 0.070 3.930 26 C -0.149 4.149 27 C -0.175 4.175 28 C -0.183 4.183 29 N -0.220 5.220 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.254 0.746 41 H 0.191 0.809 42 H 0.236 0.764 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.112 0.888 46 H 0.133 0.867 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.320 -1.691 -13.975 27.239 hybrid contribution 0.442 1.045 1.461 1.850 sum -22.878 -0.646 -12.514 26.085 Atomic orbital electron populations 1.22065 0.92561 1.03348 1.03058 1.21197 0.95343 0.96562 0.83360 0.91030 1.22393 0.86551 1.02362 0.96084 1.60028 1.05626 1.26428 1.39844 1.21640 0.89217 1.02571 0.93376 1.21089 0.90934 0.81495 0.83038 1.90561 1.73036 1.52029 1.34533 1.42015 1.06057 1.53914 1.21222 1.18988 0.82062 1.37470 1.07384 0.93055 1.26155 0.96195 0.97242 1.01877 1.69812 1.07599 1.44364 1.35899 0.85333 0.79441 0.79767 0.76748 1.18044 1.20132 1.15227 1.45779 1.63506 1.15076 1.08258 1.17946 0.77885 0.85720 0.83338 1.90746 1.52182 1.15739 1.85204 1.21752 0.95835 0.90531 0.95138 1.23196 0.99926 1.04207 0.93028 1.24041 0.87996 0.88644 0.99993 1.68138 1.16276 1.11663 1.26603 1.22494 0.90218 0.96572 0.83685 1.20784 1.09780 0.85415 0.98924 1.23053 0.95197 0.99085 1.00135 1.23098 0.95924 1.02164 0.97135 1.68028 1.12237 1.09108 1.32631 0.93389 0.90882 0.89198 0.91016 0.88286 0.84228 0.90194 0.86268 0.77376 0.91138 0.74619 0.80944 0.76370 0.85606 0.85966 0.88755 0.86696 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.48 71.98 0.68 -1.61 16 2 C 0.14 2.82 2.81 44.99 0.13 2.94 16 3 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 4 C 0.05 0.98 5.24 86.30 0.45 1.44 16 5 N -0.69 -19.14 5.85 -517.93 -3.03 -22.17 16 6 C 0.06 1.83 6.17 85.56 0.53 2.36 16 7 C 0.45 20.01 7.82 87.66 0.69 20.70 16 8 O -0.62 -34.75 15.78 -3.08 -0.05 -34.80 16 9 N -0.59 -27.65 5.09 -306.99 -1.56 -29.21 16 10 C -0.33 -19.46 10.16 84.04 0.85 -18.61 16 11 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 12 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 13 N -0.94 -56.83 13.96 21.66 0.30 -56.53 16 14 Si 0.97 38.46 27.74 68.60 1.90 40.36 16 15 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 16 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 17 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 18 N -0.68 -16.56 4.79 -444.83 -2.13 -18.69 16 19 C 0.57 16.00 7.79 86.97 0.68 16.68 16 20 O -0.56 -17.86 16.09 -3.65 -0.06 -17.92 16 21 C 0.11 3.06 6.79 42.00 0.29 3.34 16 22 C -0.18 -3.79 9.72 22.71 0.22 -3.57 16 23 C 0.16 2.78 11.31 84.76 0.96 3.74 16 24 N -0.51 -11.29 9.32 -187.89 -1.75 -13.04 16 25 C 0.34 8.43 7.31 138.79 1.01 9.45 16 26 C -0.13 -2.69 6.24 -11.51 -0.07 -2.76 16 27 C -0.14 -2.04 10.23 30.60 0.31 -1.73 16 28 C -0.15 -2.39 10.01 30.62 0.31 -2.09 16 29 N -0.50 -13.78 9.60 -177.07 -1.70 -15.48 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.34 10.91 8.43 -89.70 -0.76 10.15 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 38 H 0.39 14.91 5.76 -92.70 -0.53 14.37 16 39 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.42 10.31 7.99 -92.71 -0.74 9.57 16 41 H 0.17 3.05 7.74 -2.91 -0.02 3.03 16 42 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.10 1.83 7.53 -2.39 -0.02 1.81 16 Total: -1.00 -84.75 403.89 -1.63 -86.38 By element: Atomic # 1 Polarization: 52.31 SS G_CDS: -1.06 Total: 51.25 kcal Atomic # 6 Polarization: 22.34 SS G_CDS: 7.50 Total: 29.84 kcal Atomic # 7 Polarization: -145.24 SS G_CDS: -9.87 Total: -155.12 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.11 Total: -52.72 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.36 kcal Total: -84.75 -1.63 -86.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.763 kcal (2) G-P(sol) polarization free energy of solvation -84.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds