Wall clock time and date at job start Wed Apr 1 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99450 * 2 1 4 4 C 1.50704 * 109.47270 * 269.99498 * 3 2 1 5 5 H 1.07998 * 119.99892 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00373 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00248 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46843 * 89.99819 * 8 6 4 10 10 H 1.48491 * 109.47419 * 210.00063 * 8 6 4 11 11 H 1.48504 * 109.46795 * 330.00650 * 8 6 4 12 12 C 1.34775 * 120.00196 * 180.02562 * 2 1 3 13 13 S 1.71202 * 119.99863 * 180.02562 * 12 2 1 14 14 N 1.34771 * 120.00210 * 359.97438 * 12 2 1 15 15 C 1.46494 * 120.00107 * 180.02562 * 14 12 2 16 16 C 1.53122 * 109.52174 * 205.00019 * 15 14 12 17 17 C 1.53040 * 109.27933 * 182.37937 * 16 15 14 18 18 N 1.46846 * 109.52603 * 59.17712 * 17 16 15 19 19 C 1.46893 * 111.00130 * 174.16513 * 18 17 16 20 20 C 1.50696 * 109.47236 * 170.00273 * 19 18 17 21 21 C 1.38230 * 120.00309 * 89.99753 * 20 19 18 22 22 C 1.38235 * 120.00326 * 179.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00061 * 0.07178 * 23 22 21 25 25 C 1.38234 * 120.00081 * 359.88514 * 24 23 22 26 26 C 1.46852 * 111.19772 * 298.26117 * 18 17 16 27 27 C 1.53035 * 109.52355 * 61.73794 * 26 18 17 28 28 H 1.08996 * 109.47327 * 270.00057 * 1 2 3 29 29 H 1.08999 * 109.47093 * 30.00331 * 1 2 3 30 30 H 1.08998 * 109.46757 * 149.99754 * 1 2 3 31 31 H 1.08993 * 109.47594 * 30.00050 * 3 2 1 32 32 H 1.09000 * 109.46782 * 150.00088 * 3 2 1 33 33 H 0.96999 * 120.00378 * 179.97438 * 7 6 4 34 34 H 0.97000 * 119.99580 * 359.97438 * 14 12 2 35 35 H 1.08997 * 109.52238 * 325.12360 * 15 14 12 36 36 H 1.08997 * 109.50491 * 62.43335 * 16 15 14 37 37 H 1.09000 * 109.53687 * 302.33783 * 16 15 14 38 38 H 1.09003 * 109.46008 * 299.16111 * 17 16 15 39 39 H 1.08999 * 109.45452 * 179.19405 * 17 16 15 40 40 H 1.09003 * 109.47526 * 49.99792 * 19 18 17 41 41 H 1.09001 * 109.47224 * 289.99946 * 19 18 17 42 42 H 1.08000 * 120.00376 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 44 44 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 45 45 H 1.08005 * 120.00107 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.00147 * 180.10835 * 25 24 23 47 47 H 1.09000 * 109.46010 * 181.75754 * 26 18 17 48 48 H 1.09005 * 109.45940 * 301.72671 * 26 18 17 49 49 H 1.09006 * 109.50538 * 180.87622 * 27 26 18 50 50 H 1.09007 * 109.50255 * 60.76211 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2575 -2.9127 8 14 3.7335 3.9290 -0.2529 9 1 5.1067 3.5072 0.1238 10 1 3.7494 5.3555 -0.6648 11 1 2.8269 3.7598 0.9110 12 6 2.1389 -1.1672 -0.0005 13 16 3.8509 -1.1671 0.0001 14 7 1.4651 -2.3344 -0.0005 15 6 2.1977 -3.6030 -0.0005 16 6 1.3208 -4.7002 -0.6104 17 6 2.0683 -6.0344 -0.5535 18 7 2.3886 -6.3584 0.8425 19 6 2.9835 -7.6972 0.9490 20 6 3.5210 -7.8987 2.3424 21 6 2.7098 -8.4336 3.3255 22 6 3.2030 -8.6189 4.6035 23 6 4.5076 -8.2696 4.8983 24 6 5.3186 -7.7338 3.9153 25 6 4.8257 -7.5493 2.6371 26 6 3.2686 -5.3429 1.4348 27 6 2.5569 -3.9880 1.4373 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 3.8224 4.0834 -3.0899 34 1 0.4951 -2.3344 0.0002 35 1 3.1097 -3.4970 -0.5879 36 1 1.0970 -4.4524 -1.6480 37 1 0.3914 -4.7795 -0.0466 38 1 2.9906 -5.9588 -1.1296 39 1 1.4409 -6.8202 -0.9741 40 1 3.7962 -7.7922 0.2288 41 1 2.2235 -8.4502 0.7405 42 1 1.6906 -8.7069 3.0953 43 1 2.5679 -9.0327 5.3728 44 1 4.8929 -8.4140 5.8968 45 1 6.3378 -7.4605 4.1457 46 1 5.4598 -7.1323 1.8687 47 1 3.5130 -5.6266 2.4585 48 1 4.1852 -5.2705 0.8494 49 1 3.2162 -3.2314 1.8627 50 1 1.6472 -4.0559 2.0339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063142224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:28 Heat of formation + Delta-G solvation = 58.189826 kcal Electronic energy + Delta-G solvation = -28014.143120 eV Core-core repulsion = 24360.572511 eV Total energy + Delta-G solvation = -3653.570609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.21434 -39.24352 -38.10463 -35.68683 -33.13154 -32.33545 -31.27329 -30.91325 -30.43169 -28.67851 -27.28662 -25.96502 -23.53644 -23.45804 -22.73593 -22.25596 -21.28317 -20.93633 -19.84883 -17.53373 -17.07874 -16.98187 -16.95514 -15.97037 -15.67932 -15.56363 -14.85462 -14.78602 -14.61998 -14.32516 -14.07496 -13.95320 -13.66625 -13.59751 -13.49837 -13.00258 -12.70231 -12.54748 -12.45305 -12.23113 -12.18605 -11.90007 -11.70726 -11.43345 -11.36685 -11.23883 -11.10588 -11.05302 -10.60180 -10.55165 -10.46377 -10.27966 -10.03630 -9.53234 -9.14645 -9.06204 -8.56385 -8.46834 -8.21757 -6.96004 -6.45842 -6.06031 -4.04762 1.05685 1.16161 2.15192 2.68338 3.27551 3.34287 3.38613 3.41435 3.44178 3.81241 3.89331 4.41086 4.43120 4.58346 4.61442 4.76133 4.80696 4.88396 4.90644 5.07083 5.12117 5.15315 5.23048 5.23907 5.26836 5.37016 5.41933 5.43359 5.45324 5.50253 5.60609 5.72772 5.73970 5.78956 5.80167 5.85055 5.96252 6.09097 6.20303 6.26987 6.29734 6.35141 6.41457 6.64391 6.72823 6.80129 6.84213 6.90586 7.19446 7.44860 7.56978 7.87239 8.46394 8.93635 9.52214 11.07207 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.002304 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.468332 B =12148.407797 C =12776.120150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.544 5.544 3 C 0.209 3.791 4 C -0.519 4.519 5 H 0.073 0.927 6 C 0.078 3.922 7 N -0.896 5.896 8 Si 0.875 3.125 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.268 1.268 12 C 0.565 3.435 13 S -0.658 6.658 14 N -0.699 5.699 15 C 0.149 3.851 16 C -0.123 4.123 17 C 0.062 3.938 18 N -0.534 5.534 19 C 0.093 3.907 20 C -0.082 4.082 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.112 4.112 26 C 0.057 3.943 27 C -0.122 4.122 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.265 0.735 34 H 0.390 0.610 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.039 0.961 49 H 0.086 0.914 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 -24.976 12.150 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.249 5.249 3 C 0.089 3.911 4 C -0.558 4.558 5 H 0.091 0.909 6 C -0.124 4.124 7 N -0.534 5.534 8 Si 0.702 3.298 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.193 1.193 12 C 0.206 3.794 13 S -0.529 6.529 14 N -0.332 5.332 15 C 0.044 3.956 16 C -0.162 4.162 17 C -0.066 4.066 18 N -0.258 5.258 19 C -0.034 4.034 20 C -0.083 4.083 21 C -0.119 4.119 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.130 4.130 26 C -0.071 4.071 27 C -0.162 4.162 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.227 0.773 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.101 0.899 48 H 0.057 0.943 49 H 0.105 0.895 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.587 -24.746 12.273 28.182 hybrid contribution -0.342 0.721 0.087 0.803 sum -5.929 -24.025 12.360 27.661 Atomic orbital electron populations 1.21948 0.80748 1.03847 1.01596 1.47294 1.05942 1.06114 1.65569 1.20263 0.93741 0.77134 0.99976 1.21005 1.37470 1.07072 0.90222 0.90909 1.24731 0.94925 0.97255 0.95526 1.69878 1.41332 1.23535 1.18642 0.86870 0.80632 0.79543 0.82757 1.19425 1.21248 1.19266 1.22119 0.95294 0.81231 0.80764 1.93098 0.90291 1.94417 1.75084 1.45022 1.08883 1.04344 1.74953 1.21289 0.96549 0.79923 0.97875 1.21864 0.99199 0.93689 1.01428 1.21989 0.99369 0.96795 0.88477 1.62137 1.44748 1.01404 1.17558 1.21065 0.97966 0.91607 0.92756 1.19750 0.93887 0.98998 0.95627 1.21015 0.99387 0.98731 0.92734 1.21155 0.95795 1.00448 0.96706 1.21170 0.94330 0.99184 0.99256 1.21151 0.99980 0.99461 0.93257 1.21144 0.95278 0.99539 0.97070 1.22170 0.93842 0.90763 1.00322 1.21952 1.01363 0.96390 0.96469 0.92225 0.88923 0.92132 0.94872 0.91255 0.92532 0.77296 0.87153 0.90731 0.90854 0.94116 0.90282 0.93787 0.89868 0.85968 0.86177 0.86242 0.86030 0.86148 0.89898 0.94266 0.89526 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.20 59.85 0.61 1.52 16 2 N -0.54 -10.65 2.86 -185.00 -0.53 -11.18 16 3 C 0.21 4.97 3.99 -5.19 -0.02 4.95 16 4 C -0.52 -14.61 9.94 -34.44 -0.34 -14.96 16 5 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 7 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 8 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 12 C 0.57 11.02 7.67 -86.92 -0.67 10.35 16 13 S -0.66 -15.74 26.01 -107.50 -2.80 -18.54 16 14 N -0.70 -10.08 4.95 -55.41 -0.27 -10.35 16 15 C 0.15 1.95 2.28 -67.81 -0.15 1.80 16 16 C -0.12 -1.20 5.57 -26.65 -0.15 -1.35 16 17 C 0.06 0.56 5.42 -3.83 -0.02 0.53 16 18 N -0.53 -5.07 4.80 -236.11 -1.13 -6.20 16 19 C 0.09 0.77 5.43 -4.98 -0.03 0.74 16 20 C -0.08 -0.72 4.12 -104.63 -0.43 -1.15 16 21 C -0.10 -0.83 9.70 -39.59 -0.38 -1.22 16 22 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.11 -1.00 7.80 -39.58 -0.31 -1.31 16 26 C 0.06 0.63 4.58 -3.83 -0.02 0.62 16 27 C -0.12 -1.55 5.63 -26.65 -0.15 -1.70 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 30 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 31 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 32 H 0.07 1.79 6.01 -51.93 -0.31 1.48 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.39 4.49 6.34 -40.82 -0.26 4.23 16 35 H 0.11 1.80 6.81 -51.93 -0.35 1.44 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.04 0.35 8.02 -51.93 -0.42 -0.06 16 41 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.08 0.95 5.64 -51.93 -0.29 0.65 16 48 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 1.34 7.52 -51.93 -0.39 0.95 16 50 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -34.80 402.36 -14.14 -48.94 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.23 Total: 4.25 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.35 Total: -3.14 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -1.16 Total: -54.58 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: -15.74 SS G_CDS: -2.80 Total: -18.54 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.80 -14.14 -48.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063142224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.134 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds