Wall clock time and date at job start Wed Apr 1 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99450 * 2 1 4 4 C 1.50704 * 109.47270 * 269.99498 * 3 2 1 5 5 H 1.07998 * 119.99892 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00373 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00248 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46843 * 89.99819 * 8 6 4 10 10 H 1.48491 * 109.47419 * 210.00063 * 8 6 4 11 11 H 1.48504 * 109.46795 * 330.00650 * 8 6 4 12 12 C 1.34775 * 120.00196 * 180.02562 * 2 1 3 13 13 S 1.71202 * 119.99863 * 180.02562 * 12 2 1 14 14 N 1.34771 * 120.00210 * 359.97438 * 12 2 1 15 15 C 1.46494 * 120.00107 * 180.02562 * 14 12 2 16 16 C 1.53122 * 109.52174 * 205.00019 * 15 14 12 17 17 C 1.53040 * 109.27933 * 182.37937 * 16 15 14 18 18 N 1.46846 * 109.52603 * 59.17712 * 17 16 15 19 19 C 1.46893 * 111.00130 * 174.16513 * 18 17 16 20 20 C 1.50696 * 109.47236 * 170.00273 * 19 18 17 21 21 C 1.38230 * 120.00309 * 89.99753 * 20 19 18 22 22 C 1.38235 * 120.00326 * 179.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00061 * 0.07178 * 23 22 21 25 25 C 1.38234 * 120.00081 * 359.88514 * 24 23 22 26 26 C 1.46852 * 111.19772 * 298.26117 * 18 17 16 27 27 C 1.53035 * 109.52355 * 61.73794 * 26 18 17 28 28 H 1.08996 * 109.47327 * 270.00057 * 1 2 3 29 29 H 1.08999 * 109.47093 * 30.00331 * 1 2 3 30 30 H 1.08998 * 109.46757 * 149.99754 * 1 2 3 31 31 H 1.08993 * 109.47594 * 30.00050 * 3 2 1 32 32 H 1.09000 * 109.46782 * 150.00088 * 3 2 1 33 33 H 0.96999 * 120.00378 * 179.97438 * 7 6 4 34 34 H 0.97000 * 119.99580 * 359.97438 * 14 12 2 35 35 H 1.08997 * 109.52238 * 325.12360 * 15 14 12 36 36 H 1.08997 * 109.50491 * 62.43335 * 16 15 14 37 37 H 1.09000 * 109.53687 * 302.33783 * 16 15 14 38 38 H 1.09003 * 109.46008 * 299.16111 * 17 16 15 39 39 H 1.08999 * 109.45452 * 179.19405 * 17 16 15 40 40 H 1.09003 * 109.47526 * 49.99792 * 19 18 17 41 41 H 1.09001 * 109.47224 * 289.99946 * 19 18 17 42 42 H 1.08000 * 120.00376 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 44 44 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 45 45 H 1.08005 * 120.00107 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.00147 * 180.10835 * 25 24 23 47 47 H 1.09000 * 109.46010 * 181.75754 * 26 18 17 48 48 H 1.09005 * 109.45940 * 301.72671 * 26 18 17 49 49 H 1.09006 * 109.50538 * 180.87622 * 27 26 18 50 50 H 1.09007 * 109.50255 * 60.76211 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2575 -2.9127 8 14 3.7335 3.9290 -0.2529 9 1 5.1067 3.5072 0.1238 10 1 3.7494 5.3555 -0.6648 11 1 2.8269 3.7598 0.9110 12 6 2.1389 -1.1672 -0.0005 13 16 3.8509 -1.1671 0.0001 14 7 1.4651 -2.3344 -0.0005 15 6 2.1977 -3.6030 -0.0005 16 6 1.3208 -4.7002 -0.6104 17 6 2.0683 -6.0344 -0.5535 18 7 2.3886 -6.3584 0.8425 19 6 2.9835 -7.6972 0.9490 20 6 3.5210 -7.8987 2.3424 21 6 2.7098 -8.4336 3.3255 22 6 3.2030 -8.6189 4.6035 23 6 4.5076 -8.2696 4.8983 24 6 5.3186 -7.7338 3.9153 25 6 4.8257 -7.5493 2.6371 26 6 3.2686 -5.3429 1.4348 27 6 2.5569 -3.9880 1.4373 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 3.8224 4.0834 -3.0899 34 1 0.4951 -2.3344 0.0002 35 1 3.1097 -3.4970 -0.5879 36 1 1.0970 -4.4524 -1.6480 37 1 0.3914 -4.7795 -0.0466 38 1 2.9906 -5.9588 -1.1296 39 1 1.4409 -6.8202 -0.9741 40 1 3.7962 -7.7922 0.2288 41 1 2.2235 -8.4502 0.7405 42 1 1.6906 -8.7069 3.0953 43 1 2.5679 -9.0327 5.3728 44 1 4.8929 -8.4140 5.8968 45 1 6.3378 -7.4605 4.1457 46 1 5.4598 -7.1323 1.8687 47 1 3.5130 -5.6266 2.4585 48 1 4.1852 -5.2705 0.8494 49 1 3.2162 -3.2314 1.8627 50 1 1.6472 -4.0559 2.0339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063142224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:27 Heat of formation + Delta-G solvation = 36.754473 kcal Electronic energy + Delta-G solvation = -28015.072626 eV Core-core repulsion = 24360.572511 eV Total energy + Delta-G solvation = -3654.500115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.10048 -40.32313 -39.17619 -36.90009 -34.80764 -33.72449 -32.05295 -31.70015 -31.33671 -30.35566 -28.63445 -26.92433 -24.98316 -24.38269 -23.54988 -23.37596 -22.61857 -21.80666 -20.87233 -19.14450 -18.89288 -18.42535 -17.63834 -17.00583 -16.45553 -16.37422 -16.27185 -16.11625 -15.76641 -15.44926 -15.36430 -15.00257 -14.89433 -14.53612 -14.40765 -14.23195 -13.81450 -13.71692 -13.43948 -13.41181 -13.28131 -13.04651 -12.91867 -12.81582 -12.52523 -12.31420 -12.20432 -12.09977 -12.03043 -11.83108 -11.80268 -11.72778 -11.54066 -11.38967 -10.78764 -9.78932 -9.74771 -9.64560 -9.24105 -8.78539 -8.34815 -8.29098 -6.32812 0.43237 0.53887 0.56129 1.10873 1.34137 1.43197 1.46094 1.74224 2.34520 2.47087 2.73960 3.07147 3.16767 3.66012 3.74880 3.90093 3.97051 4.01436 4.09005 4.18321 4.22377 4.30163 4.38986 4.40216 4.42412 4.47522 4.51869 4.63817 4.65687 4.69618 4.70731 4.76127 4.84079 4.89024 4.92036 4.95805 5.03806 5.11820 5.14400 5.19331 5.20594 5.32642 5.44005 5.59404 5.66365 5.70700 5.72775 5.83257 6.04200 6.07837 6.16683 6.25956 6.48872 6.64871 7.27986 8.87325 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.002304 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.468332 B =12148.407797 C =12776.120150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.549 5.549 3 C 0.220 3.780 4 C -0.515 4.515 5 H 0.027 0.973 6 C 0.017 3.983 7 N -0.945 5.945 8 Si 0.942 3.058 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.235 1.235 12 C 0.584 3.416 13 S -0.759 6.759 14 N -0.668 5.668 15 C 0.147 3.853 16 C -0.112 4.112 17 C 0.061 3.939 18 N -0.529 5.529 19 C 0.094 3.906 20 C -0.092 4.092 21 C -0.107 4.107 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.127 4.127 26 C 0.068 3.932 27 C -0.112 4.112 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.412 0.588 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.029 0.971 39 H 0.107 0.893 40 H 0.042 0.958 41 H 0.103 0.897 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.115 0.885 47 H 0.081 0.919 48 H 0.021 0.979 49 H 0.053 0.947 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 -26.480 14.235 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.254 5.254 3 C 0.097 3.903 4 C -0.554 4.554 5 H 0.046 0.954 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.765 3.235 9 H -0.207 1.207 10 H -0.203 1.203 11 H -0.158 1.158 12 C 0.219 3.781 13 S -0.631 6.631 14 N -0.301 5.301 15 C 0.043 3.957 16 C -0.151 4.151 17 C -0.067 4.067 18 N -0.254 5.254 19 C -0.032 4.032 20 C -0.093 4.093 21 C -0.125 4.125 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.146 4.146 26 C -0.060 4.060 27 C -0.151 4.151 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.047 0.953 39 H 0.125 0.875 40 H 0.060 0.940 41 H 0.121 0.879 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.133 0.867 47 H 0.099 0.901 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.798 -26.307 14.371 31.241 hybrid contribution 0.542 1.050 -0.604 1.327 sum -8.256 -25.257 13.767 29.927 Atomic orbital electron populations 1.22347 0.76757 1.05249 1.04416 1.47221 1.08241 1.04707 1.65220 1.19880 0.94058 0.79467 0.96859 1.21166 1.36624 1.06214 0.91373 0.95415 1.25664 0.95212 0.98980 0.98237 1.70029 1.42895 1.24468 1.21178 0.85804 0.79739 0.77681 0.80234 1.20734 1.20326 1.15772 1.21538 0.93431 0.82707 0.80401 1.93306 0.95529 1.95187 1.79121 1.44972 1.09922 1.03160 1.72051 1.21399 0.96124 0.80164 0.98045 1.21831 0.99146 0.92353 1.01754 1.22069 0.99353 0.97159 0.88106 1.62169 1.43990 1.01446 1.17771 1.21125 0.98480 0.91094 0.92536 1.19859 0.93874 0.99397 0.96132 1.21243 0.99990 0.98471 0.92790 1.21464 0.95998 0.99992 0.97145 1.21453 0.94524 0.98741 0.99936 1.21368 1.00711 0.99739 0.93356 1.21238 0.95764 1.00230 0.97377 1.21969 0.93292 0.90614 1.00143 1.21797 1.01175 0.96289 0.95845 0.88490 0.89333 0.89136 0.92290 0.93275 0.92427 0.74706 0.90706 0.90056 0.88704 0.95250 0.87483 0.93981 0.87923 0.84544 0.84154 0.84509 0.85245 0.86727 0.90117 0.96071 0.92842 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.36 10.20 127.77 1.30 2.67 16 2 N -0.55 -20.73 2.86 -739.21 -2.11 -22.84 16 3 C 0.22 10.28 3.99 85.63 0.34 10.62 16 4 C -0.51 -29.57 9.94 25.60 0.25 -29.32 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 6 C 0.02 1.01 5.47 84.65 0.46 1.47 16 7 N -0.95 -60.07 13.96 21.44 0.30 -59.77 16 8 Si 0.94 44.90 27.47 68.60 1.88 46.79 16 9 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.23 -9.84 6.54 99.48 0.65 -9.19 16 12 C 0.58 22.53 7.67 179.06 1.37 23.90 16 13 S -0.76 -38.03 26.01 -56.49 -1.47 -39.50 16 14 N -0.67 -18.08 4.95 -329.21 -1.63 -19.71 16 15 C 0.15 3.75 2.28 45.07 0.10 3.86 16 16 C -0.11 -1.89 5.57 30.65 0.17 -1.72 16 17 C 0.06 0.96 5.42 86.33 0.47 1.43 16 18 N -0.53 -9.07 4.80 -900.93 -4.32 -13.39 16 19 C 0.09 1.39 5.43 85.56 0.46 1.86 16 20 C -0.09 -1.52 4.12 -19.87 -0.08 -1.61 16 21 C -0.11 -1.56 9.70 22.27 0.22 -1.35 16 22 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 23 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 24 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 25 C -0.13 -2.30 7.80 22.27 0.17 -2.12 16 26 C 0.07 1.51 4.58 86.32 0.40 1.91 16 27 C -0.11 -2.78 5.63 30.65 0.17 -2.61 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 2.30 8.07 -2.39 -0.02 2.28 16 30 H 0.09 1.64 6.36 -2.39 -0.02 1.62 16 31 H 0.06 2.49 7.13 -2.39 -0.02 2.47 16 32 H 0.05 2.55 6.01 -2.39 -0.01 2.53 16 33 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.41 7.88 6.34 -92.71 -0.59 7.29 16 35 H 0.07 2.54 6.81 -2.39 -0.02 2.52 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 1.16 8.12 -2.39 -0.02 1.14 16 40 H 0.04 0.64 8.02 -2.39 -0.02 0.62 16 41 H 0.10 1.14 8.09 -2.39 -0.02 1.12 16 42 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 44 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.11 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.08 1.84 5.64 -2.39 -0.01 1.83 16 48 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 49 H 0.05 1.71 7.52 -2.38 -0.02 1.70 16 50 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -81.49 402.36 -0.58 -82.07 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.28 Total: 22.55 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.49 Total: 3.80 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -7.77 Total: -115.71 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Atomic # 16 Polarization: -38.03 SS G_CDS: -1.47 Total: -39.50 kcal Total: -81.49 -0.58 -82.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063142224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.829 kcal (2) G-P(sol) polarization free energy of solvation -81.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds